cluster # 1856

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Anopheles gambiae
cluster # 1856 cluster # 1856 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1856#0 length = 641 sequences # 1

consensus_1856#1 length = 523 sequences # 1

consensusID : consensus_1856#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence

                              [TCCCCGAGGTTTAGCGAGGAACAGCAGCAGCAGCAGGAGGAGGAGAAAATGGAGCAGGAAGCGAAGGAGGTGGAAGAAAAGGAGGGAGGGACAGAGGATATGGACACGAGCGAAAAGAAGGAGCAAAATCCGTAACGCGAGCAGCGGGGCGGCATCAACTACTACGGGTTTGTTGTGTGATGGTCCGAAACAGTGCTGCAAAATGTCACTGTCGATGTCATANAACCAAAAAAATCCATCAGCATCATGTATTCAATATTGATCAGCAGAGCTGATTACTCAAAACGATATGGTGTGACCAATGCATGTANTACGTGACGGCCTTTGCGACCAACGCCCTTGGCTCAGCTCAACAAACTGTCACTTGAACTATCACCCGCTCAGCTCAGCCTGCTGCATTCCAATTCTTGCCACACANCATGCTCACCTGNACCACTTGCACCTATTGGTTTCCATGGCAAACCNGNACCAAGCCTANCTACCTCCGGCTATCTTGGCAACGNCTTACATTTCCAANGCCAAANACCTGGAANANCAAGTTNGGGGNTAACACAGTACTACCAGNCATACTGGCGNCTTACATCANCAAACCCAACTTTCCATACCGGCGCTNGNCAACTNTCGACCCTTCCCAGACCTTC]

[+] EMBL AL694430             [TCCCCGAGGTTTAGCGAGGAACAGCAGCAGCAGCAGGAGGAGGAGAAAATGGAGCAGGAAGCGAAGGAGGTGGAAGAAAAGGAGGGAGGGACAGAGGATATGGACACGAGCGAAAAGAAGGAGCAAAATCCGTAACGCGAGCAGCGGGGCGGCATCAACTACTACGGGTTTGTTGTGTGATGGTCCGAAACAGTGCTGCAAAATGTCACTGTCGATGTCATANAACCAAAAAAATCCATCAGCATCATGTATTCAATATTGATCAGCAGAGCTGATTACTCAAAACGATATGGTGTGACCAATGCATGTANTACGTGACGGCCTTTGCGACCAACGCCCTTGGCTCAGCTCAACAAACTGTCACTTGAACTATCACCCGCTCAGCTCAGCCTGCTGCATTCCAATTCTTGCCACACANCATGCTCACCTGNACCACTTGCACCTATTGGTTTCCATGGCAAACCNGNACCAAGCCTANCTACCTCCGGCTATCTTGGCAACGNCTTACATTTCCAANGCCAAANACCTGGAANANCAAGTTNGGGGNTAACACAGTACTACCAGNCATACTGGCGNCTTACATCANCAAACCCAACTTTCCATACCGGCGCTNGNCAACTNTCGACCCTTCCCAGACCTTC]




>consensus_1856#0
TCCCCGAGGTTTAGCGAGGAACAGCAGCAGCAGCAGGAGGAGGAGAAAATGGAGCAGGAA
GCGAAGGAGGTGGAAGAAAAGGAGGGAGGGACAGAGGATATGGACACGAGCGAAAAGAAG
GAGCAAAATCCGTAACGCGAGCAGCGGGGCGGCATCAACTACTACGGGTTTGTTGTGTGA
TGGTCCGAAACAGTGCTGCAAAATGTCACTGTCGATGTCATANAACCAAAAAAATCCATC
AGCATCATGTATTCAATATTGATCAGCAGAGCTGATTACTCAAAACGATATGGTGTGACC
AATGCATGTANTACGTGACGGCCTTTGCGACCAACGCCCTTGGCTCAGCTCAACAAACTG
TCACTTGAACTATCACCCGCTCAGCTCAGCCTGCTGCATTCCAATTCTTGCCACACANCA
TGCTCACCTGNACCACTTGCACCTATTGGTTTCCATGGCAAACCNGNACCAAGCCTANCT
ACCTCCGGCTATCTTGGCAACGNCTTACATTTCCAANGCCAAANACCTGGAANANCAAGT
TNGGGGNTAACACAGTACTACCAGNCATACTGGCGNCTTACATCANCAAACCCAACTTTC
CATACCGGCGCTNGNCAACTNTCGACCCTTCCCAGACCTTC

consensusID : consensus_1856#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence

                              [GGCAGAATCCGCACGANTGTACGGCGAGGAACAGCAGCAGCAGCAGGAGGAGGAGAAAATGGAGCAGGAAGCGAAGGAGGTGGAAGAAAAGGAGGGAGGGACAGAGGATATGGACACGAGCGAAAAGAAGGAGCAAAATCCGTAACGCGAGCAGCGGGGCGGCATCAACTACTACGGGTTTGTTGTGTGATGGTCCGAAACAGTGCTGCAAAATGTCACTGTCGATGTCATAAACAAAAAAATCCATCAGCATCATGTATTCAAGTATTGATCAGCAGAGCTGATACTCAAAACGATTGGTGTGACCAATGCATGTTTCGTGACGGCTTTGCGACCAACGCCTGGTCAGTCACAATGTCATGACTTTTNTGTTGTTGCTGTGATCAATTCTGCAAAATGTCACTGACATGACTATGTCATGACGCACTTTCGTTGAGTATCAGCAAGTGAAGCATTGTTTCTCGGTATGGTAAACATCTCGTGATGCTCGTGACCAGTTTTGCAGGCAACTGGTCCGAAATGT]

[+] EMBL BX468189             [GGCAGAATCCGCACGANTGTACGGCGAGGAACAGCAGCAGCAGCAGGAGGAGGAGAAAATGGAGCAGGAAGCGAAGGAGGTGGAAGAAAAGGAGGGAGGGACAGAGGATATGGACACGAGCGAAAAGAAGGAGCAAAATCCGTAACGCGAGCAGCGGGGCGGCATCAACTACTACGGGTTTGTTGTGTGATGGTCCGAAACAGTGCTGCAAAATGTCACTGTCGATGTCATAAACAAAAAAATCCATCAGCATCATGTATTCAAGTATTGATCAGCAGAGCTGATACTCAAAACGATTGGTGTGACCAATGCATGTTTCGTGACGGCTTTGCGACCAACGCCTGGTCAGTCACAATGTCATGACTTTTNTGTTGTTGCTGTGATCAATTCTGCAAAATGTCACTGACATGACTATGTCATGACGCACTTTCGTTGAGTATCAGCAAGTGAAGCATTGTTTCTCGGTATGGTAAACATCTCGTGATGCTCGTGACCAGTTTTGCAGGCAACTGGTCCGAAATGT]




>consensus_1856#1
GGCAGAATCCGCACGANTGTACGGCGAGGAACAGCAGCAGCAGCAGGAGGAGGAGAAAAT
GGAGCAGGAAGCGAAGGAGGTGGAAGAAAAGGAGGGAGGGACAGAGGATATGGACACGAG
CGAAAAGAAGGAGCAAAATCCGTAACGCGAGCAGCGGGGCGGCATCAACTACTACGGGTT
TGTTGTGTGATGGTCCGAAACAGTGCTGCAAAATGTCACTGTCGATGTCATAAACAAAAA
AATCCATCAGCATCATGTATTCAAGTATTGATCAGCAGAGCTGATACTCAAAACGATTGG
TGTGACCAATGCATGTTTCGTGACGGCTTTGCGACCAACGCCTGGTCAGTCACAATGTCA
TGACTTTTNTGTTGTTGCTGTGATCAATTCTGCAAAATGTCACTGACATGACTATGTCAT
GACGCACTTTCGTTGAGTATCAGCAAGTGAAGCATTGTTTCTCGGTATGGTAAACATCTC
GTGATGCTCGTGACCAGTTTTGCAGGCAACTGGTCCGAAATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1856#0      ---------TCCCCGAG-GTTTAGCGAGGAACAGCAGCAGCAGCAGGAGGAGGAGAAAAT 50
consensus_1856#1      GGCAGAATCCGCACGANTGTACGGCGAGGAACAGCAGCAGCAGCAGGAGGAGGAGAAAAT 60
                                 * ***  **   *************************************

consensus_1856#0      GGAGCAGGAAGCGAAGGAGGTGGAAGAAAAGGAGGGAGGGACAGAGGATATGGACACGAG 110
consensus_1856#1      GGAGCAGGAAGCGAAGGAGGTGGAAGAAAAGGAGGGAGGGACAGAGGATATGGACACGAG 120
                      ************************************************************

consensus_1856#0      CGAAAAGAAGGAGCAAAATCCGTAACGCGAGCAGCGGGGCGGCATCAACTACTACGGGTT 170
consensus_1856#1      CGAAAAGAAGGAGCAAAATCCGTAACGCGAGCAGCGGGGCGGCATCAACTACTACGGGTT 180
                      ************************************************************

consensus_1856#0      TGTTGTGTGATGGTCCGAAACAGTGCTGCAAAATGTCACTGTCGATGTCATANAACCAAA 230
consensus_1856#1      TGTTGTGTGATGGTCCGAAACAGTGCTGCAAAATGTCACTGTCGATGTCATAAA--CAAA 238
                      **************************************************** *  ****

consensus_1856#0      AAAATCCATCAGCATCATGTATTCAA-TATTGATCAGCAGAGCTGATTACTCAAAACGAT 289
consensus_1856#1      AAAATCCATCAGCATCATGTATTCAAGTATTGATCAGCAGAGCTGAT-ACTCAAAACGAT 297
                      ************************** ******************** ************

consensus_1856#0      ATGGTGTGACCAATGCATGTANTACGTGACGGCCTTTGCGACCAACGCCCTTGGCTCAGC 349
consensus_1856#1      -TGGTGTGACCAATGCATG--TTTCGTGACGGC-TTTGCGACCAACGCC--TGGTCAGTC 351
                       ******************   * ********* ***************  ***     *

consensus_1856#0      TCAACAAACTGTCACTTGAACTATCACC-CGCTCAGCTCAGCCTGCTG-CATTCCAATTC 407
consensus_1856#1      ACAATGTCATGACTTTTNTGTTGTTGCTGTGATCAATTCTGCAAAATGTCACTGACATGA 411
                       ***     ** *  **    * *  *   * ***  ** **    ** ** *   **  

consensus_1856#0      TTGCCACACANCATGCTCACCTGNACCACTTGCACCTATTGGTTTCCATGGCAAACCNGN 467
consensus_1856#1      CTATGTCATGACGCACTTTCGTTGAGTATCAGCAAGTGAAG-----CATTGTTTCTCGGT 466
                       *    **   *   **  * *  *  *   ***  *   *     *** *     * * 

consensus_1856#0      ACCAAGCCTANCTACCTCCGGCTATCTTGGCAACGNCTTACATTTCCAANGCCAAANACC 527
consensus_1856#1      ATGG----TAAACATCTC--GTGATGCTCGTGACCA-----GTTTTGCAGGCAACTGGTC 515
                      *       **   * ***  *  **  * *  **        ***   * ** *     *

consensus_1856#0      TGGAANANCAAGTTNGGGGNTAACACAGTACTACCAGNCATACTGGCGNCTTACATCANC 587
consensus_1856#1      CGAAATGT---------------------------------------------------- 523
                       * **                                                       

consensus_1856#0      AAACCCAACTTTCCATACCGGCGCTNGNCAACTNTCGACCCTTCCCAGACCTTC 641
consensus_1856#1      ------------------------------------------------------