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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[CCGCCCACGCGTCCGAGAGTAGTCTGCTGAAGATATGGATCGTGTCCACGCAGGAGCTGTACTTGGAGATCCCATTTGCAGCGCACACGTTTGAAATATCGGCCATCGTGCATCCAGCGTCGTATAAAAACAAAATTTTGCTTGGTAGCGCCCAGGGGGGACTGCAGCTGTGGAATTTGAAGTCGTGCAAATTGGTGCACAAATTTACGGATTACGATAGCAAAGTAATGCAGCTGGAGCAAGCCCCCGCTCTGGACGTTATCGCCGTAGGATTGCATAGTGGAAGGATCGTGTTGCTCAACATCCAGTACGATCAACCGGTGATGGAAGTTCACCAGGACTGGGGACCAGTGACAGCGATAAGCTTCCGTACCGATGGTACCGCCATCATGGCCAGTGCCAGTTCAAACGGGCAGGTTGTGTTTTGGGATTTGGAAGAAAAAACCATCGTATCGACACTGATGGCACACGATGATTCAGTGACCGGGCTTCACTTTCTACCTAACGAACCGTTGTTGGTAACGAGCTCGCCAGACAACTCTTTGAAAATGTGGATTTTTGATCTGTCCGATGGTGGGGCACGTTTGTTGCGTTTCCGCGAAGGTCATGCCGCACCGCCCACGTGCATCCGATATCATGGTGCATCCGGTCGGAATATAGTATCAGCGGGTGAAGATTCTTCGTTGAG]
[+] EMBL BM611988 [CCGCCCACGCGTCCGAGAGTAGTCTGCTGAAGATATGGATCGTGTCCACGCAGGAGCTGTACTTGGAGATCCCATTTGCAGCGCACACGTTTGAAATATCGGCCATCGTGCATCCAGCGTCGTATAAAAACAAAATTTTGCTTGGTAGCGCCCAGGGGGGACTGCAGCTGTGGAATTTGAAGTCGTGCAAATTGGTGCACAAATTTACGGATTACGATAGCAAAGTAATGCAGCTGGAGCAAGCCCCCGCTCTGGACGTTATCGCCGTAGGATTGCATAGTGGAAGGATCGTGTTGCTCAACATCCAGTACGATCAACCGGTGATGGAAGTTCACCAGGACTGGGGACCAGTGACAGCGATAAGCTTCCGTACCGATGGTACCGCCATCATGGCCAGTGCCAGTTCAAACGGGCAGGTTGTGTTTTGGGATTTGGAAGAAAAAACCATCGTATCGACACTGATGGCACACGATGATTCAGTGACCGGGCTTCACTTTCTACCTAACGAACCGTTGTTGGTAACGAGCTCGCCAGACAACTCTTTGAAAATGTGGATTTTTGATCTGTCCGATGGTGGGGCACGTTTGTTGCGTTTCCGCGAAGGTCATGCCGCACCGCCCACGTGCATCCGATATCATGGTGCATCCGGTCGGAATATAGTATCAGCGGGTGAAGATTCTTCGTTGAG]
consensusID : consensus_1862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[CCGGTGCTATTGTGCTGCGGAATGTATTGAATCGGCGTGCGTGCGATTTATTTCGAAAAAAGTAAGATAGAACCATGAATAGCAGCCATCTATTTCAACCAAACCGAGCCCTTGGCTACGTTAGCAATCATATACCTCCCAACGTACGCTACATTGACCAGAGGCGCGAGAATGTTGTGATCACTTGTGTTGGACGTTCGTTCCACGTTTACGGCTGCAACAGCTTTCGTCTGATTCGTACTGGCCGAATTCATCCGGCCAACATCACTGCCATCGCCGCGGATGGGTTCTTAACGTATGTTGCCGCCGGCAACCTCATCTACGGATGGCGATCGAGCGTGGAACTGCGCAAAGTGTATCGCGGGCATGAGAAGCCGGTACGTCTGCTGTTGCCGTTCGCCAAACACCTCATATCAGTGGATGAGAGTAGTCTGCTGAAGATATGGATCGTGTCCACGCAGGAGCTGTACTTGGAGATCCCATTTGCGGCGCACACGTTTGAAATATCGGCCATCGTGCATCCAGCGTCGTATAAAAACAAAATTTTGCTTGGTAGCGCCCAGGGGGGACTGCAGCTGTGGGAATTTGAAGTCGTGCAAATTGGTGCACAAATTTACGGATTTCGATAGCAAAGTAATGCAGCTGGAGCAAGCCCCCGCTCTGGACGTTATCGCCGTAGGATT]
[+] EMBL BM604189 [CCGGTGCTATTGTGCTGCGGAATGTATTGAATCGGCGTGCGTGCGATTTATTTCGAAAAAAGTAAGATAGAACCATGAATAGCAGCCATCTATTTCAACCAAACCGAGCCCTTGGCTACGTTAGCAATCATATACCTCCCAACGTACGCTACATTGACCAGAGGCGCGAGAATGTTGTGATCACTTGTGTTGGACGTTCGTTCCACGTTTACGGCTGCAACAGCTTTCGTCTGATTCGTACTGGCCGAATTCATCCGGCCAACATCACTGCCATCGCCGCGGATGGGTTCTTAACGTATGTTGCCGCCGGCAACCTCATCTACGGATGGCGATCGAGCGTGGAACTGCGCAAAGTGTATCGCGGGCATGAGAAGCCGGTACGTCTGCTGTTGCCGTTCGCCAAACACCTCATATCAGTGGATGAGAGTAGTCTGCTGAAGATATGGATCGTGTCCACGCAGGAGCTGTACTTGGAGATCCCATTTGCGGCGCACACGTTTGAAATATCGGCCATCGTGCATCCAGCGTCGTATAAAAACAAAATTTTGCTTGGTAGCGCCCAGGGGGGACTGCAGCTGTGGGAATTTGAAGTCGTGCAAATTGGTGCACAAATTTACGGATTTCGATAGCAAAGTAATGCAGCTGGAGCAAGCCCCCGCTCTGGACGTTATCGCCGTAGGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1862#0 CCGCCCACGCGTCCGAGAGTAGTCTGCTGAA--GATATGGATCGTGTCCACG-CAGGAGC 57
consensus_1862#1 CCGGTGCTATTGTGCTGCGGAATGTATTGAATCGGCGTGCGTGCGATTTATTTCGAAAAA 60
*** * * * * * **** * ** * * * * *
consensus_1862#0 TGTACT-TGGAGATCCCATTTGCAGCGCACACGTTTGAA--ATATCG-GCCATCG--TGC 111
consensus_1862#1 AGTAAGATAGAACCATGAATAGCAGC-CATCTATTTCAACCAAACCGAGCCCTTGGCTAC 119
*** * ** * * ***** ** *** ** * * ** *** * * * *
consensus_1862#0 ATCCAGCGTCGTATAAAAACAAAATTTTGCTTGGTAGCGCCCAGGGGGGACTGCAGCTGT 171
consensus_1862#1 GTTAGCAATCATATACCTCCCAACGTACGCT--ACATTGACCAGAGGCG-CGAGAATGTT 176
* ** **** * ** * *** * * **** ** * * * *
consensus_1862#0 GGAATTTGAAGTCGTGCAAATTGGTGCACAAATTTACGGATTACGATAGCA---AAGTAA 228
consensus_1862#1 GTGATCACTTGTGTTGGACGTTCGTTC-CACGTTTACGG-CTGCAACAGCTTTCGTCTGA 234
* ** ** ** * ** ** * ** ******* * * * *** * *
consensus_1862#0 TGCAGCTGGAGCAAGCCCCCGCTCTGGACGTTATCGCCGTAGGATTGCATAG----TGGA 284
consensus_1862#1 TTCGTACTGGCCGAATTCATCCGGCCAACATCACTGCCATCGCCGCGGATGGGTTCTTAA 294
* * * * * * * ** * * *** * * * ** * * *
consensus_1862#0 AGGATCGTGTTGCT--CAACATCCAGTACGAT---CAACCGGTGATGGAAGTTCACCAGG 339
consensus_1862#1 CGTATGTTGCCGCCGGCAACCTCATCTACGGATGGCGATCGAGCGTGGAACTGCGCAAAG 354
* ** ** ** **** ** **** * * ** ***** * * * * *
consensus_1862#0 ACTGGGGACCAGTGACAGCGATAAGCTTCCGTACCGATGGTACCGCCATCATGGCCAGTG 399
consensus_1862#1 T----GTATCGCGGGCA-TGAGAAGC--CGGTACGTCTGCTGTTGCCGT--TCGCCAA-- 403
* * * * ** ** **** * **** ** * *** * * ****
consensus_1862#0 CCAGTTCAAACGGGCAGGTTGTGTTTTGGGATTTGGAAGAAAAAACCATCGTATCGACAC 459
consensus_1862#1 ACACCTCATATCAGTGGATGAGAGT----AGTCTGCTGAAGATATGGATCGTGTCCACGC 459
** *** * * * * * * ** * * * ***** ** ** *
consensus_1862#0 TGATG--GCACACGATGATTCAGTGACCGGGCTTCACTTTCTACCTAACGAACCGTTGTT 517
consensus_1862#1 AGGAGCTGTACTTGGAGATCCCATTTGCGGCGCACACGTTTGAAATATCGG-CCATCGT- 517
* * * ** * *** * * *** *** ** * ** ** ** * **
consensus_1862#0 GGTAACGAGC-TCGCCAGACAACTCTTTGAAAATGTGGATTTTTGATCTGTCCGATGGTG 576
consensus_1862#1 -GCATCCAGCGTCGTATAAAAAC------AAAATTTTG---CTTGGTAGCGCCCAGGGGG 567
* * * *** *** * *** ***** * * *** * ** * ** *
consensus_1862#0 GGGCACGTTTGTTGCGTTTCCGCGAAGGTCATGCCGCACCGCCCACGTGCA---TCCGAT 633
consensus_1862#1 GACTGCAGCTGTGGGAATTTGAAGTCGTGCAAATTGGTGCACAAATTTACGGATTTCGAT 627
* * *** * ** * * ** * * * * * * * ****
consensus_1862#0 ATCATGGTGCATCCGGTCGGAATATAGTATCAGCGGGTGAAGAT-TCTTCGTTGAG-- 688
consensus_1862#1 AGCAAAGTA-ATGCAGCTGGAGCA-AGCCCCCGCTCTGGACGTTATCGCCGTAGGATT 683
* ** ** ** * * *** * ** * ** ** * * ** *** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||