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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1863#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[CCGAGCAGATGGAGGCGCGAAAAGGGCTGTCTCGTTGCATCAAACAGCCAAGCAGCAAACAATCAAACCGTCCCTTTGGGCTTCTCTTGTTGCTTGTTCCAATTTAAAACAAAAATGGCAAAAATCAATTTGAAGCTAAGCTCGAAGGACGTGGAAACCAGCCTCCAGGACGGCTCCATCAAGCTGCAGTACATTCCCGCCACGATCAAGGGCGACGGGCCGGCGAATCTGGAGCAGTTTTTCACCCCGTACACGGAAACGCAACGGGACGGAACTCTGTGCAATGCGCTTCGGGGATATCCGCTGCGCGGCAAAGCAACGTCCCTGCCGGCCGGCTACACGGGCGTGATGCTGCAAGAAACGAAAAAGCCACTCTCGGACGAGGACGATCGAACGCTAACGTTTGCCGGTGCGTTCCGCGACTTTACCTACTGGAACTACGATCGCCAGCCGTCCCGGAACGATCCGATGGCGAAGGCACTGGGCTGGCTGCAGCTGGCGGAGGTGCTGCATGGCGATGAGCCCGATGATGGCACCGAGCAGGACGTGAAGC]
[+] EMBL BM604184 [CCGAGCAGATGGAGGCGCGAAAAGGGCTGTCTCGTTGCATCAAACAGCCAAGCAGCAAACAATCAAACCGTCCCTTTGGGCTTCTCTTGTTGCTTGTTCCAATTTAAAACAAAAATGGCAAAAATCAATTTGAAGCTAAGCTCGAAGGACGTGGAAACCAGCCTCCAGGACGGCTCCATCAAGCTGCAGTACATTCCCGCCACGATCAAGGGCGACGGGCCGGCGAATCTGGAGCAGTTTTTCACCCCGTACACGGAAACGCAACGGGACGGAACTCTGTGCAATGCGCTTCGGGGATATCCGCTGCGCGGCAAAGCAACGTCCCTGCCGGCCGGCTACACGGGCGTGATGCTGCAAGAAACGAAAAAGCCACTCTCGGACGAGGACGATCGAACGCTAACGTTTGCCGGTGCGTTCCGCGACTTTACCTACTGGAACTACGATCGCCAGCCGTCCCGGAACGATCCGATGGCGAAGGCACTGGGCTGGCTGCAGCTGGCGGAGGTGCTGCATGGCGATGAGCCCGATGATGGCACCGAGCAGGACGTGAAGC]
consensusID : consensus_1863#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence
[AATCGGCACGAGGTNNTAATGGGCCGTCCCGCTCTCGCACGCACGGCGCTGCTACGGTTGATTCGGTGTTTACCATCCGTCCGTCAAACTGGGCCTGCTGTTGTTCCTCTTCCTTCTGTCAAACCGTTTAAAAATAAAATTCAAACCTGCTGAAGCCCCGCGTGACAGCAAGACAGAAAGCAGATGGAGGCGCGAAAAGGGCTGTCTCGGTTGCATCAAACAGGCCAAAAGCAGCAAACAAGTCAAAGCTTTCGTCCCTTTGGGCTGCACTTTTTGCTTGTTCCAACTTTTAAGAACAAANAACTGGCAAAAATCAATTTGAAGCTAAGCTCGAAGTGACGTGGAAACCAGCCTCCAGGACGGNTCCATCAAGCTGCAGTACATTCCCGCCACGATCAAGGGCGACGGGCCGGCGGAATCTGGAGCAGNTTTTTCACACCGGTACACGGAAACGGCAACGGGACGGAACTCTGTGCAAATGACGCTTCGGGGATATCCGATGCGCGGCAAAGCAAGCGTACCCGTGACCGGGCCGGCAT]
[+] EMBL BX469360 [AATCGGCACGAGGTNNTAATGGGCCGTCCCGCTCTCGCACGCACGGCGCTGCTACGGTTGATTCGGTGTTTACCATCCGTCCGTCAAACTGGGCCTGCTGTTGTTCCTCTTCCTTCTGTCAAACCGTTTAAAAATAAAATTCAAACCTGCTGAAGCCCCGCGTGACAGCAAGACAGAAAGCAGATGGAGGCGCGAAAAGGGCTGTCTCGGTTGCATCAAACAGGCCAAAAGCAGCAAACAAGTCAAAGCTTTCGTCCCTTTGGGCTGCACTTTTTGCTTGTTCCAACTTTTAAGAACAAANAACTGGCAAAAATCAATTTGAAGCTAAGCTCGAAGTGACGTGGAAACCAGCCTCCAGGACGGNTCCATCAAGCTGCAGTACATTCCCGCCACGATCAAGGGCGACGGGCCGGCGGAATCTGGAGCAGNTTTTTCACACCGGTACACGGAAACGGCAACGGGACGGAACTCTGTGCAAATGACGCTTCGGGGATATCCGATGCGCGGCAAAGCAAGCGTACCCGTGACCGGGCCGGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1863#0 ------------------------------------------------------------
consensus_1863#1 AATCGGCACGAGGTNNTAATGGGCCGTCCCGCTCTCGCACGCACGGCGCTGCTACGGTTG 60
consensus_1863#0 ------------------------------------------------------------
consensus_1863#1 ATTCGGTGTTTACCATCCGTCCGTCAAACTGGGCCTGCTGTTGTTCCTCTTCCTTCTGTC 120
consensus_1863#0 -------------------------------------------------------CCGAG 5
consensus_1863#1 AAACCGTTTAAAAATAAAATTCAAACCTGCTGAAGCCCCGCGTGACAGCAAGACAGAAAG 180
**
consensus_1863#0 CAGATGGAGGCGCGAAAAGGGCTGTCTCG-TTGCATCAAACAGCC---AAGCAGCAAACA 61
consensus_1863#1 CAGATGGAGGCGCGAAAAGGGCTGTCTCGGTTGCATCAAACAGGCCAAAAGCAGCAAACA 240
***************************** ************* * ************
consensus_1863#0 A-TCAAA----CCGTCCCTTTGGGCTTCTCTTGTTGCTTGTTCCAATTT---AAAACAAA 113
consensus_1863#1 AGTCAAAGCTTTCGTCCCTTTGGGCTGCACTTTTTGCTTGTTCCAACTTTTAAGAACAAA 300
* ***** ************** * *** ************* ** * ******
consensus_1863#0 AA--TGGCAAAAATCAATTTGAAGCTAAGCTCGAAG-GACGTGGAAACCAGCCTCCAGGA 170
consensus_1863#1 NAACTGGCAAAAATCAATTTGAAGCTAAGCTCGAAGTGACGTGGAAACCAGCCTCCAGGA 360
* ******************************** ***********************
consensus_1863#0 CGGCTCCATCAAGCTGCAGTACATTCCCGCCACGATCAAGGGCGACGGGCCGGCG-AATC 229
consensus_1863#1 CGGNTCCATCAAGCTGCAGTACATTCCCGCCACGATCAAGGGCGACGGGCCGGCGGAATC 420
*** *************************************************** ****
consensus_1863#0 TGGAGCAGTTTTT-CACCCCG-TACACGGAAACG-CAACGGGACGGAACTCTGTGCAAT- 285
consensus_1863#1 TGGAGCAGNTTTTTCACACCGGTACACGGAAACGGCAACGGGACGGAACTCTGTGCAAAT 480
******** **** *** *** ************ ***********************
consensus_1863#0 -GCGCTTCGGGGATATCCGCTGCGCGGCAAAGCAA-CGTCCCTGCCGGCCGGCTACACGG 343
consensus_1863#1 GACGCTTCGGGGATATCCGATGCGCGGCAAAGCAAGCGTACCCGT-GACCGG----GCCG 535
***************** *************** *** ** * * **** * *
consensus_1863#0 GCGTGATGCTGCAAGAAACGAAAAAGCCACTCTCGGACGAGGACGATCGAACGCTAACGT 403
consensus_1863#1 GCAT-------------------------------------------------------- 539
** *
consensus_1863#0 TTGCCGGTGCGTTCCGCGACTTTACCTACTGGAACTACGATCGCCAGCCGTCCCGGAACG 463
consensus_1863#1 ------------------------------------------------------------
consensus_1863#0 ATCCGATGGCGAAGGCACTGGGCTGGCTGCAGCTGGCGGAGGTGCTGCATGGCGATGAGC 523
consensus_1863#1 ------------------------------------------------------------
consensus_1863#0 CCGATGATGGCACCGAGCAGGACGTGAAGC 553
consensus_1863#1 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||