cluster # 1874

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Anopheles gambiae
cluster # 1874 cluster # 1874 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1874#0 length = 635 sequences # 1

consensus_1874#1 length = 606 sequences # 1

consensusID : consensus_1874#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [CCGGATTGGCGTCTTTGCCTGTTGGAAAAGTTGTAGACCGGATTTTTTACATCAACAATTTGCTGGTCGTATGTCGATTTCCGTGCAGTTCCGCAGCCGCAAAAGCTATCCCCTTCCGTATTTTGTGTTCGTGCCACAGCAAGAGCGACTGTAGGGAGTGGATCGAAAAACGCAAGCAGTGACCAAACACATATCTCGGAAGTGTGGTGCAGAAGATAAAACGCCACCCCGAAAACTTCGTCGAAGCGACTAGAAGTGTGAAGCGCAGCGGCAGCGACGCACCACGGGAAACCCACGAGAGAGAGGACAGCAGCCAGCAAAAGGACACACGGCTGCCGTGCGGTTGGTGGCACAGTGTGGTGTGTGTGTGTGTATGCCTTTCCGAAGGCATTAGAGTGCAGTGAAAGGGCTACGGGCACCGACGGCGTGCGTGTGATTTCTCGCTGACACCCCCCGGATACGCAAACGGCCTCAAAATTGAGGAAATAGAGGAAATCGTGGAGACGGAGGTTATCCTCTCTCCAGATGAGATGCACCATGAGGAGTTCGAGATCACGATGGTCCCGATGGAATCGACAACCGTGCTGACCACGGGCGGCACGGGCACACTGAAAGCGGGACGTGCGCGACATGGT]

[+] EMBL BM604874             [CCGGATTGGCGTCTTTGCCTGTTGGAAAAGTTGTAGACCGGATTTTTTACATCAACAATTTGCTGGTCGTATGTCGATTTCCGTGCAGTTCCGCAGCCGCAAAAGCTATCCCCTTCCGTATTTTGTGTTCGTGCCACAGCAAGAGCGACTGTAGGGAGTGGATCGAAAAACGCAAGCAGTGACCAAACACATATCTCGGAAGTGTGGTGCAGAAGATAAAACGCCACCCCGAAAACTTCGTCGAAGCGACTAGAAGTGTGAAGCGCAGCGGCAGCGACGCACCACGGGAAACCCACGAGAGAGAGGACAGCAGCCAGCAAAAGGACACACGGCTGCCGTGCGGTTGGTGGCACAGTGTGGTGTGTGTGTGTGTATGCCTTTCCGAAGGCATTAGAGTGCAGTGAAAGGGCTACGGGCACCGACGGCGTGCGTGTGATTTCTCGCTGACACCCCCCGGATACGCAAACGGCCTCAAAATTGAGGAAATAGAGGAAATCGTGGAGACGGAGGTTATCCTCTCTCCAGATGAGATGCACCATGAGGAGTTCGAGATCACGATGGTCCCGATGGAATCGACAACCGTGCTGACCACGGGCGGCACGGGCACACTGAAAGCGGGACGTGCGCGACATGGT]




>consensus_1874#0
CCGGATTGGCGTCTTTGCCTGTTGGAAAAGTTGTAGACCGGATTTTTTACATCAACAATT
TGCTGGTCGTATGTCGATTTCCGTGCAGTTCCGCAGCCGCAAAAGCTATCCCCTTCCGTA
TTTTGTGTTCGTGCCACAGCAAGAGCGACTGTAGGGAGTGGATCGAAAAACGCAAGCAGT
GACCAAACACATATCTCGGAAGTGTGGTGCAGAAGATAAAACGCCACCCCGAAAACTTCG
TCGAAGCGACTAGAAGTGTGAAGCGCAGCGGCAGCGACGCACCACGGGAAACCCACGAGA
GAGAGGACAGCAGCCAGCAAAAGGACACACGGCTGCCGTGCGGTTGGTGGCACAGTGTGG
TGTGTGTGTGTGTATGCCTTTCCGAAGGCATTAGAGTGCAGTGAAAGGGCTACGGGCACC
GACGGCGTGCGTGTGATTTCTCGCTGACACCCCCCGGATACGCAAACGGCCTCAAAATTG
AGGAAATAGAGGAAATCGTGGAGACGGAGGTTATCCTCTCTCCAGATGAGATGCACCATG
AGGAGTTCGAGATCACGATGGTCCCGATGGAATCGACAACCGTGCTGACCACGGGCGGCA
CGGGCACACTGAAAGCGGGACGTGCGCGACATGGT

consensusID : consensus_1874#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence

                              [CCGCTAGTTCTAGATCGCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGCACCGACGGCGTGCGTGTGATTTCTCGCTGACACCCCCCGGATACGCAAACGGCCTCAAAATTGAGGAAATAGAGGAAATCGTGGAGACGGAGGTTATCCTCTCTCCAGATGAGATGCACCATGAGGAGTTCGAGATCACGATGGTCCCGATGGAATCGACAACCGTGCTGACCACGGGCGGCACGGGCACACTGAAGCGGGACGTGCGCGACATGGTGCGGGAGGCCAACTTTCAGACCAAGCTGCTGATGCAGGAAAACGAAGCCCAAGACTACCATTTCCAGCATGCGTCGAGCGCGGACGATACGGAGGGCTCGGACCAGGAGCACACGCTGGGCGACATTACGTACAAGAGCGAGGCGGACGGTAATGATACGATGAACTCCAGCAACCAAAGCTCGAGCCGCAAGCGGCGCGGCAACCTGCCAAAGCAGTCGGTAAAGATCCTGAAGCGATGGCTGTACGAGCACCGGTTCAACGCGTACCCGACCGATGCGGAGAAGCTGACGCTGTCGCAGGAAGCCAATCTGACCGTGCTGCAGGTGTGC]

[+] EMBL BM576322             [CCGCTAGTTCTAGATCGCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGCACCGACGGCGTGCGTGTGATTTCTCGCTGACACCCCCCGGATACGCAAACGGCCTCAAAATTGAGGAAATAGAGGAAATCGTGGAGACGGAGGTTATCCTCTCTCCAGATGAGATGCACCATGAGGAGTTCGAGATCACGATGGTCCCGATGGAATCGACAACCGTGCTGACCACGGGCGGCACGGGCACACTGAAGCGGGACGTGCGCGACATGGTGCGGGAGGCCAACTTTCAGACCAAGCTGCTGATGCAGGAAAACGAAGCCCAAGACTACCATTTCCAGCATGCGTCGAGCGCGGACGATACGGAGGGCTCGGACCAGGAGCACACGCTGGGCGACATTACGTACAAGAGCGAGGCGGACGGTAATGATACGATGAACTCCAGCAACCAAAGCTCGAGCCGCAAGCGGCGCGGCAACCTGCCAAAGCAGTCGGTAAAGATCCTGAAGCGATGGCTGTACGAGCACCGGTTCAACGCGTACCCGACCGATGCGGAGAAGCTGACGCTGTCGCAGGAAGCCAATCTGACCGTGCTGCAGGTGTGC]




>consensus_1874#1
CCGCTAGTTCTAGATCGCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGCAC
CGACGGCGTGCGTGTGATTTCTCGCTGACACCCCCCGGATACGCAAACGGCCTCAAAATT
GAGGAAATAGAGGAAATCGTGGAGACGGAGGTTATCCTCTCTCCAGATGAGATGCACCAT
GAGGAGTTCGAGATCACGATGGTCCCGATGGAATCGACAACCGTGCTGACCACGGGCGGC
ACGGGCACACTGAAGCGGGACGTGCGCGACATGGTGCGGGAGGCCAACTTTCAGACCAAG
CTGCTGATGCAGGAAAACGAAGCCCAAGACTACCATTTCCAGCATGCGTCGAGCGCGGAC
GATACGGAGGGCTCGGACCAGGAGCACACGCTGGGCGACATTACGTACAAGAGCGAGGCG
GACGGTAATGATACGATGAACTCCAGCAACCAAAGCTCGAGCCGCAAGCGGCGCGGCAAC
CTGCCAAAGCAGTCGGTAAAGATCCTGAAGCGATGGCTGTACGAGCACCGGTTCAACGCG
TACCCGACCGATGCGGAGAAGCTGACGCTGTCGCAGGAAGCCAATCTGACCGTGCTGCAG
GTGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1874#0      CCGGATTGGCGTCTTTGCCTGTTGGAAAAGTTGTAGACCGGATTTTTTACATCAACAATT 60
consensus_1874#1      --------------CCGCTAGTTCTAGATCGCGCCCACGCGTCCGCCCACGCGTCCGCCC 46
                                      **  ***  * *    *   **  *       **     *    

consensus_1874#0      TGCTGGTCGTATGTCGATTTCCGTGCAGTTCCGCAGCCGCAAAAGCTATCCCCTTCCGTA 120
consensus_1874#1      ACGCGTCCGGGCACCGACGGC-GTGCGTGTGATTTCTCGCTGACACCCCCCGGATACGCA 105
                          *  **     ***   * ****   *       ***  *  *   **   * ** *

consensus_1874#0      TTTTGTGTTCGTGCCACAGCAAGAGCG---ACTGTAGGGA--GTGGATCGAAAAACGCAA 175
consensus_1874#1      AACGGCCTCAAAATTGAGGAAATAGAGGAAATCGTGGAGACGGAGGTTATCCTCTCTCCA 165
                          *  *          * ** ** *   *  ** * **  * ** *       * * *

consensus_1874#0      GCAGTGACCAAACACAT--ATCTCGGAAGTGTGGTGCAGAAGATAAAAC--GCCACCCCG 231
consensus_1874#1      GATGAGATGCACCATGAGGAGTTCGAGATCACGATGGTCCCGATGGAATCGACAACCGTG 225
                      *  * **   * **     *  ***  *    * **     ***  **    * ***  *

consensus_1874#0      AAAACTTCGTCGAAGCGACTAGAAGTGTGAAGCGCAGCGGCAGCGACGCACCACGGGAAA 291
consensus_1874#1      CTGACCACG--GGCGGCACGGGCACACTGAAGCGGGACGTGCGCGACATGGTGCGGGAGG 283
                         **  **  *  *  **  * *   *******   **   *****      *****  

consensus_1874#0      CCCACGAGAGAGAGGACAGCAGCCAGCAAAAGGACACACGGCTGCCGTGCGGTTGGTGGC 351
consensus_1874#1      CCAACTTTC-AGACCA-AGCTGCTGATGCAGGAAAACGAAGCC-CAAGACTACCATTTCC 340
                      ** **     ***  * *** **      * * * **   **  *    *      *  *

consensus_1874#0      ACAGTGTGGTGTGTGTGTGTG-TATGCCTTTCCGAAGGCATTAGAGTGCAGTGAAAGG-G 409
consensus_1874#1      AGCATGCGTCGAGCGCGGACGATACGGAGGGCTCGGACCAGGAGCACACGCTGGGCGACA 400
                      *   ** *  * * * *   * ** *     *      **  **    *  **   *   

consensus_1874#0      CTACGGGCACCGACGGCGTGCGTG-TGATTTCTCGCTGACACCCCCCGGATACGCAAACG 468
consensus_1874#1      TTACGTACAAGAGCGAGGCGGACGGTAATGATACGATGAA---CTCCAGCAACCAAAGC- 456
                       ****  **    **  * *   * * **    ** ***    * ** *  **  ** * 

consensus_1874#0      GCCTCAAAATTGAGGAAATAGAGGAAATCGTGGAGACGGAGGTTATCCTCTCTCCAGATG 528
consensus_1874#1      ---TCGAGCCGCAAGCGGCGCGGCAACCTGCCAAAGCAGTCGGTAAAGA---TCCTGAAG 510
                         ** *     * *       * **   *   *  * *  * **       *** ** *

consensus_1874#0      AGATGCACCATGAGGAGTTCGAGATCACGATGGTCCCGATGGAATCGACAACCGTGCTGA 588
consensus_1874#1      CGATG-GCTGT-ACGAGCACCGGTTCAACGCGTACCCGACCGATGCGGAGAA---GCTGA 565
                       ****  *  * * ***  *  * ***    *  *****  **  **   *    *****

consensus_1874#0      CCACGGGCGGCACGGGCACACTGAAAGCGGGACGTGCGCGACATGGT 635
consensus_1874#1      CGCTGTCGCAGGAAGCCAATCTGACCGTGCTGCAGGTGTGC------ 606
                      *   *         * **  ****  * *   *  * * *