cluster # 1894

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Anopheles gambiae
cluster # 1894 cluster # 1894 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1894#0 length = 672 sequences # 1

consensus_1894#1 length = 492 sequences # 1

consensusID : consensus_1894#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence

                              [AGATCGCCCGAGGTTCGCGCGTTAAGAGTATTAAACACGTAAATCGAGTGTNGCATGGTGTGGCAGAGAAAATAAACCACACATATATATACATAAACAATACCTTCATCTTCTGCAAGCAAAGACAAATATACTGAGTAGTTAGAACGATAAAGTTGTTAAATTGGCACGACGAAAGTGCGGTTGAGCCGGCGAAAAGCCATTCTTTGAACCAAATCATTACGATCATAGAGTGTATGTTAGGCGGAAAGGAAGTGCATACGCAGTAGTATTTATCTTCGAATCGTTTATCGCTTTTAGGTAAAGCGAATTTTCCGGCTTTAATCTGTTTCATCTTCACGATTGGCGCCATCGACAGGCAATGTAGGAAATGTTCACCTTCTTCACGCGTACGTTTCAAATATTCACCAATAGCAGCGCCTCAAAGCGGGTGGGTCGTTGCAAAGTAATTCAGNTATTCACGGGGCGTGGGAAAGTAGTAGAAAAGTTCACCATATTTAGTAGACNGTAAAACAATCCCAATTTAATGGGGTGGNCTTAGGCAGNGGTCCTCCTATCTAATNTGGTGGCCTGGCCAGTCCGGTCTTTTCCGTTGGACNANNTTTGCNNNATATANTGGTTCATCCGGGNAACAAGTGCCACTTACCACACGTANAGGAAAACAGAAACGAA]

[+] EMBL AL694591             [AGATCGCCCGAGGTTCGCGCGTTAAGAGTATTAAACACGTAAATCGAGTGTNGCATGGTGTGGCAGAGAAAATAAACCACACATATATATACATAAACAATACCTTCATCTTCTGCAAGCAAAGACAAATATACTGAGTAGTTAGAACGATAAAGTTGTTAAATTGGCACGACGAAAGTGCGGTTGAGCCGGCGAAAAGCCATTCTTTGAACCAAATCATTACGATCATAGAGTGTATGTTAGGCGGAAAGGAAGTGCATACGCAGTAGTATTTATCTTCGAATCGTTTATCGCTTTTAGGTAAAGCGAATTTTCCGGCTTTAATCTGTTTCATCTTCACGATTGGCGCCATCGACAGGCAATGTAGGAAATGTTCACCTTCTTCACGCGTACGTTTCAAATATTCACCAATAGCAGCGCCTCAAAGCGGGTGGGTCGTTGCAAAGTAATTCAGNTATTCACGGGGCGTGGGAAAGTAGTAGAAAAGTTCACCATATTTAGTAGACNGTAAAACAATCCCAATTTAATGGGGTGGNCTTAGGCAGNGGTCCTCCTATCTAATNTGGTGGCCTGGCCAGTCCGGTCTTTTCCGTTGGACNANNTTTGCNNNATATANTGGTTCATCCGGGNAACAAGTGCCACTTACCACACGTANAGGAAAACAGAAACGAA]




>consensus_1894#0
AGATCGCCCGAGGTTCGCGCGTTAAGAGTATTAAACACGTAAATCGAGTGTNGCATGGTG
TGGCAGAGAAAATAAACCACACATATATATACATAAACAATACCTTCATCTTCTGCAAGC
AAAGACAAATATACTGAGTAGTTAGAACGATAAAGTTGTTAAATTGGCACGACGAAAGTG
CGGTTGAGCCGGCGAAAAGCCATTCTTTGAACCAAATCATTACGATCATAGAGTGTATGT
TAGGCGGAAAGGAAGTGCATACGCAGTAGTATTTATCTTCGAATCGTTTATCGCTTTTAG
GTAAAGCGAATTTTCCGGCTTTAATCTGTTTCATCTTCACGATTGGCGCCATCGACAGGC
AATGTAGGAAATGTTCACCTTCTTCACGCGTACGTTTCAAATATTCACCAATAGCAGCGC
CTCAAAGCGGGTGGGTCGTTGCAAAGTAATTCAGNTATTCACGGGGCGTGGGAAAGTAGT
AGAAAAGTTCACCATATTTAGTAGACNGTAAAACAATCCCAATTTAATGGGGTGGNCTTA
GGCAGNGGTCCTCCTATCTAATNTGGTGGCCTGGCCAGTCCGGTCTTTTCCGTTGGACNA
NNTTTGCNNNATATANTGGTTCATCCGGGNAACAAGTGCCACTTACCACACGTANAGGAA
AACAGAAACGAA

consensusID : consensus_1894#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [GCAATGTAGAAATGTTCACCTTCTTCACGCGTACGTTTAAATATCACCAATAGCAGCGCATCAAAGCGGGTGGTCGTTGAAAGTAATTCAGTTTTCAAGGTTTGAGTGTGGGAAAGTAGTAGAAAAGTTCACCATTTTAGTAGAAAGTAACATCCATTTATGGTGCTTTGCAGCTCTCTTTATTGTGCTGGCAGTCGTCTTTCGTTGACATTGAATTATGTTATCGGAAAAGTGCATTACAAGTAGAGAAAACAGAACGATGGCACCGCGGTGAAGAGTCCCCGTACTGAGCAGGGGATAGGGACTGCAGAGCAAGAAACTTATAAATAAGCAACACGCTGGGAAAACGATTGCAAAGAGCGTGTGTACACATTCTTTATTAGTGGTACGAGATTAGAAGGATGAACGGAAGTTATAGAACGGAAGCAAAAACACAGAGAAAACGAGTGTGATGCTATATTTGTGGTAGCAATAAAGAACGAGATTGACAAA]

[+] EMBL BX613234             [GCAATGTAGAAATGTTCACCTTCTTCACGCGTACGTTTAAATATCACCAATAGCAGCGCATCAAAGCGGGTGGTCGTTGAAAGTAATTCAGTTTTCAAGGTTTGAGTGTGGGAAAGTAGTAGAAAAGTTCACCATTTTAGTAGAAAGTAACATCCATTTATGGTGCTTTGCAGCTCTCTTTATTGTGCTGGCAGTCGTCTTTCGTTGACATTGAATTATGTTATCGGAAAAGTGCATTACAAGTAGAGAAAACAGAACGATGGCACCGCGGTGAAGAGTCCCCGTACTGAGCAGGGGATAGGGACTGCAGAGCAAGAAACTTATAAATAAGCAACACGCTGGGAAAACGATTGCAAAGAGCGTGTGTACACATTCTTTATTAGTGGTACGAGATTAGAAGGATGAACGGAAGTTATAGAACGGAAGCAAAAACACAGAGAAAACGAGTGTGATGCTATATTTGTGGTAGCAATAAAGAACGAGATTGACAAA]




>consensus_1894#1
GCAATGTAGAAATGTTCACCTTCTTCACGCGTACGTTTAAATATCACCAATAGCAGCGCA
TCAAAGCGGGTGGTCGTTGAAAGTAATTCAGTTTTCAAGGTTTGAGTGTGGGAAAGTAGT
AGAAAAGTTCACCATTTTAGTAGAAAGTAACATCCATTTATGGTGCTTTGCAGCTCTCTT
TATTGTGCTGGCAGTCGTCTTTCGTTGACATTGAATTATGTTATCGGAAAAGTGCATTAC
AAGTAGAGAAAACAGAACGATGGCACCGCGGTGAAGAGTCCCCGTACTGAGCAGGGGATA
GGGACTGCAGAGCAAGAAACTTATAAATAAGCAACACGCTGGGAAAACGATTGCAAAGAG
CGTGTGTACACATTCTTTATTAGTGGTACGAGATTAGAAGGATGAACGGAAGTTATAGAA
CGGAAGCAAAAACACAGAGAAAACGAGTGTGATGCTATATTTGTGGTAGCAATAAAGAAC
GAGATTGACAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1894#0      AGATCGCCCGAGGTTCGCGCGTTAAGAGTATTAAACACGTAAATCGAGTGTNGCATGGTG 60
consensus_1894#1      ------------------------------------------------------------
                                                                                  

consensus_1894#0      TGGCAGAGAAAATAAACCACACATATATATACATAAACAATACCTTCATCTTCTGCAAGC 120
consensus_1894#1      ------------------------------------------------------------
                                                                                  

consensus_1894#0      AAAGACAAATATACTGAGTAGTTAGAACGATAAAGTTGTTAAATTGGCACGACGAAAGTG 180
consensus_1894#1      ------------------------GCAATGTAGAAATGTTCACCT---TCTTCACGCGTA 33
                                              * *   ** *  **** *  *    *  *    ** 

consensus_1894#0      CGGTTGAGC-CGGCGAAAAGCCATTCTTTGAACCAAATCATTACGATCATAGAGTGTATG 239
consensus_1894#1      CGTTTAAATATCACCAATAGCAGCGCATCAAAGCGGGT------GGTCGTTGAAAGTAAT 87
                      ** ** *      * ** ***    * *  ** *   *      * ** * **  ***  

consensus_1894#0      TTAGGCGGAAAGGAAGTGCATACGCAGTAGTATTTATCTTCGAATCGTTTATCGCTTTTA 299
consensus_1894#1      TCAGTTTTCAAGGTT-TGAGTGTGGGAAAGTAGTA------GAAAAGTTCACCATTTT-- 138
                      * **     ****   **  *  *    **** *       ***  *** * *  ***  

consensus_1894#0      GGTAAAGCGAATTTTCCGGCTTTAATCTGTTTCATCTTCACGATTGGCGCCATCGACAGG 359
consensus_1894#1      AGTAGAAAGTAACATCCATTTATGGTGCTTTGCAGCTCTCTTTATTGTGCTGGCAGTCGT 198
                       *** *  * *   ***   * *  *   ** ** **       * * **   *    * 

consensus_1894#0      CAATGTAGGAAATGTTCACCTTCTTCACGCGTACGTTTCAAATATTCACCAATAGCAGCG 419
consensus_1894#1      C--TTTCGTTGACATTGAATTATGTTATCGGAAAAGTGCA-----TTACAAGTAGAGAAA 251
                      *  * * *   *  ** *  *   * *   * *   * **     * ** * ***     

consensus_1894#0      CCTCAAAGCGGGTGGGTCGTTGCAAAGTAATTCAGNTATTCACGGGGCGTGGGAAAGTAG 479
consensus_1894#1      A--CAGAACGATGGCACCGCGGTGAAG-AGTCCCCGTACT----GAGCAGGGGATAGGGA 304
                         ** * **   *   **  *  *** * * *   ** *    * **  **** **   

consensus_1894#0      TAGAAAAGTTCACCATATTTAGTAGACNGTAAAACAATCCCAATTTAATGG-GGTGGNCT 538
consensus_1894#1      CTGCAGAG--CAAGAAACTTATAAATAAGCAACACGCTGGGAAAACGATTGCAAAGAGCG 362
                        * * **  **  * * ***  *    * ** **  *   **    ** *    *  * 

consensus_1894#0      TAGGCAGNGGTCCTCCTATCTAATNTGGTGGCCTGGCCAGTCCGGTCTTTTCCGTTGGAC 598
consensus_1894#1      TGTGTACACATTCTT-TATTAGTGGTACGAGATTAGAAGGATGAACGGAAGTTATAGAAC 421
                      *  * *    * **  ***      *    *  * *   *              * * **

consensus_1894#0      NANNTTTGCNNNATATANTGGTTCATCCGGGNAACAAGTGCCACTTACCACACGTANAGG 658
consensus_1894#1      GGAAGCAAAAACACAGAGAAAACGAGTGTGATGCTATATTTGTGGTAGCA---ATAAAGA 478
                                  * * *       *    *     *  *      ** **    ** ** 

consensus_1894#0      AAAACAGAAACGAA 672
consensus_1894#1      ACGAGATTGACAAA 492
                      *  * *   ** **