cluster # 1904

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Anopheles gambiae
cluster # 1904 cluster # 1904 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1904#0 length = 756 sequences # 1

consensus_1904#1 length = 570 sequences # 1

consensusID : consensus_1904#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 756
fasta sequence

                              [AGAGACCGCGCAACCTGACGTGGCCCTGGGCGAAAACAACCAGGTGCCCGATAGCAATCGCATACTGATGGGCGAGTACTGTTCGAATACCGTCGAGGGAGTCTACTTCGTGCCAACAAATCCTGTGCCACCGTTTGCAATGGGCTTCTGAGGAGTTGATGGCGATCAGCAGGCGGTTACTTCATTCTTGCGCTGTGCGAAGAGGCGTACACGATCGCGTACACCGTCGATTGTCGGTTTGTGATGATCTTTGCCACAGTACTGTCTGTTGGATCTATAGTGCGAACTTGCCAATGTGTTGCATTGCACATTAGGACTGGCGCAACGTTCAAACCGGAAAGAGTAAGCGTTAGAATTCATTTAGCTACCTTCACCGTAAAGCTGGTGCAATCTGTGTGGAAGATCTCAAAGGGAAACGCGGAAGATTTCACCTGCCGCCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCATAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACACGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTAAGCACCCAGGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACAAAAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTATCGGGATCATCACGGGGACGAACTCGCTCATGACTTTGCCCCGNTTGG]

[+] EMBL BX622750             [AGAGACCGCGCAACCTGACGTGGCCCTGGGCGAAAACAACCAGGTGCCCGATAGCAATCGCATACTGATGGGCGAGTACTGTTCGAATACCGTCGAGGGAGTCTACTTCGTGCCAACAAATCCTGTGCCACCGTTTGCAATGGGCTTCTGAGGAGTTGATGGCGATCAGCAGGCGGTTACTTCATTCTTGCGCTGTGCGAAGAGGCGTACACGATCGCGTACACCGTCGATTGTCGGTTTGTGATGATCTTTGCCACAGTACTGTCTGTTGGATCTATAGTGCGAACTTGCCAATGTGTTGCATTGCACATTAGGACTGGCGCAACGTTCAAACCGGAAAGAGTAAGCGTTAGAATTCATTTAGCTACCTTCACCGTAAAGCTGGTGCAATCTGTGTGGAAGATCTCAAAGGGAAACGCGGAAGATTTCACCTGCCGCCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCATAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACACGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTAAGCACCCAGGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACAAAAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTATCGGGATCATCACGGGGACGAACTCGCTCATGACTTTGCCCCGNTTGG]




>consensus_1904#0
AGAGACCGCGCAACCTGACGTGGCCCTGGGCGAAAACAACCAGGTGCCCGATAGCAATCG
CATACTGATGGGCGAGTACTGTTCGAATACCGTCGAGGGAGTCTACTTCGTGCCAACAAA
TCCTGTGCCACCGTTTGCAATGGGCTTCTGAGGAGTTGATGGCGATCAGCAGGCGGTTAC
TTCATTCTTGCGCTGTGCGAAGAGGCGTACACGATCGCGTACACCGTCGATTGTCGGTTT
GTGATGATCTTTGCCACAGTACTGTCTGTTGGATCTATAGTGCGAACTTGCCAATGTGTT
GCATTGCACATTAGGACTGGCGCAACGTTCAAACCGGAAAGAGTAAGCGTTAGAATTCAT
TTAGCTACCTTCACCGTAAAGCTGGTGCAATCTGTGTGGAAGATCTCAAAGGGAAACGCG
GAAGATTTCACCTGCCGCCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCA
TAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACA
CGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTA
AGCACCCAGGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACA
AAAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTATCGGGATCATCA
CGGGGACGAACTCGCTCATGACTTTGCCCCGNTTGG

consensusID : consensus_1904#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 570
fasta sequence

                              [CCCCGAGGTTAAAGATCTCAAAGGGAAACGCGGAAGATTTCACCTGCCCGCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCATAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACACGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTAAGCACCCAGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACAAAACAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTTATCGGGATCATCACGGGGACGAACTCGCTCATGACTTTGCCCCGTTTTGGCTCATTTACGATTGCCACACACACACACACTGGACGCACGACGCGAAACGGGGTGGTAATTTGTTCGGCGTGGAAACCCAACTTTTGATCGCCTAGGTTAAGTACACCGTCGAAGCTAAGACGCAGTGGCACGACCTTCACGACCGATGCGANAATAATGTCGGCCAGGATCCGAAAGACTTTACAAAAAACACACGTG]

[+] EMBL AL694636             [CCCCGAGGTTAAAGATCTCAAAGGGAAACGCGGAAGATTTCACCTGCCCGCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCATAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACACGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTAAGCACCCAGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACAAAACAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTTATCGGGATCATCACGGGGACGAACTCGCTCATGACTTTGCCCCGTTTTGGCTCATTTACGATTGCCACACACACACACACTGGACGCACGACGCGAAACGGGGTGGTAATTTGTTCGGCGTGGAAACCCAACTTTTGATCGCCTAGGTTAAGTACACCGTCGAAGCTAAGACGCAGTGGCACGACCTTCACGACCGATGCGANAATAATGTCGGCCAGGATCCGAAAGACTTTACAAAAAACACACGTG]




>consensus_1904#1
CCCCGAGGTTAAAGATCTCAAAGGGAAACGCGGAAGATTTCACCTGCCCGCTGCTCTATG
CTTACGCTCGATCGACAGCTTTAACACTCGCATAAACTCGCATCAACACAAAAAATGGTC
ATAAAAATGCATGGAGGGCACCGACGTGTACACGTTTGTCTCATTACCACTGTGACGTTC
AGCTGCAAGATCAACGCATGTGCCAAGAACTAAGCACCCAGGGTGCAATCAAGCAGCCAG
TAGTGGGACTATGAATTAACTTAAAGACACAAAACAATGGAATGCTAAATCTAACGCATA
ACTACGTATTATTGGTGATTTATCGGGATCATCACGGGGACGAACTCGCTCATGACTTTG
CCCCGTTTTGGCTCATTTACGATTGCCACACACACACACACTGGACGCACGACGCGAAAC
GGGGTGGTAATTTGTTCGGCGTGGAAACCCAACTTTTGATCGCCTAGGTTAAGTACACCG
TCGAAGCTAAGACGCAGTGGCACGACCTTCACGACCGATGCGANAATAATGTCGGCCAGG
ATCCGAAAGACTTTACAAAAAACACACGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1904#0      AGAGACCGCGCAACCTGACGTGGCCCTGGGCGAAAACAACCAGGTGCCCGATAGCAATCG 60
consensus_1904#1      ------------------------------------------------------------
                                                                                  

consensus_1904#0      CATACTGATGGGCGAGTACTGTTCGAATACCGTCGAGGGAGTCTACTTCGTGCCAACAAA 120
consensus_1904#1      ------------------------------------------------------------
                                                                                  

consensus_1904#0      TCCTGTGCCACCGTTTGCAATGGGCTTCTGAGGAGTTGATGGCGATCAGCAGGCGGTTAC 180
consensus_1904#1      ------------------------------------------------------------
                                                                                  

consensus_1904#0      TTCATTCTTGCGCTGTGCGAAGAGGCGTACACGATCGCGTACACCGTCGATTGTCGGTTT 240
consensus_1904#1      ------------------------------------------------------------
                                                                                  

consensus_1904#0      GTGATGATCTTTGCCACAGTACTGTCTGTTGGATCTATAGTGCGAACTTGCCAATGTGTT 300
consensus_1904#1      ------------------------------------------------------------
                                                                                  

consensus_1904#0      GCATTGCACATTAGGACTGGCGCAACGTTCAAACCGGAAAGAGTAAGCGTTAGAATTCAT 360
consensus_1904#1      ------------------------------------------------------------
                                                                                  

consensus_1904#0      TTAGCTACCTTCACCGTAAAGCTGGTGCAATCTGTGTGGAAGATCTCAAAGGGAAACGCG 420
consensus_1904#1      ----------------------------CCCCGAGGTTAAAGATCTCAAAGGGAAACGCG 32
                                                     *   **  *********************

consensus_1904#0      GAAGATTTCACCTGCCGCCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCA 480
consensus_1904#1      GAAGATTTCACCTGCCCGCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCA 92
                      ****************  ******************************************

consensus_1904#0      TAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACA 540
consensus_1904#1      TAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACA 152
                      ************************************************************

consensus_1904#0      CGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTA 600
consensus_1904#1      CGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTA 212
                      ************************************************************

consensus_1904#0      AGCACCCAGGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACA 660
consensus_1904#1      AGCACCCAGGG-TGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACA 271
                      *********** ************************************************

consensus_1904#0      AAA--ATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATT-ATCGGGATCA 717
consensus_1904#1      AAACAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTTATCGGGATCA 331
                      ***  ******************************************** **********

consensus_1904#0      TCACGGGGACGAACTCGCTCATGACTTTGCCCCGNTTGG--------------------- 756
consensus_1904#1      TCACGGGGACGAACTCGCTCATGACTTTGCCCCGTTTTGGCTCATTTACGATTGCCACAC 391
                      ********************************** ** *                     

consensus_1904#0      ------------------------------------------------------------
consensus_1904#1      ACACACACACTGGACGCACGACGCGAAACGGGGTGGTAATTTGTTCGGCGTGGAAACCCA 451
                                                                                  

consensus_1904#0      ------------------------------------------------------------
consensus_1904#1      ACTTTTGATCGCCTAGGTTAAGTACACCGTCGAAGCTAAGACGCAGTGGCACGACCTTCA 511
                                                                                  

consensus_1904#0      -----------------------------------------------------------
consensus_1904#1      CGACCGATGCGANAATAATGTCGGCCAGGATCCGAAAGACTTTACAAAAAACACACGTG 570