cluster # 1920

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Anopheles gambiae
cluster # 1920 cluster # 1920 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1920#0 length = 674 sequences # 1

consensus_1920#1 length = 419 sequences # 1

consensusID : consensus_1920#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 674
fasta sequence

                              [AATNCCCCGAGGTTAACAGAAGTGAGATAAGGCAGCCTCGCACATGAACAATCTTTCCGTGGCGGGTGTGTTTATGGTAACGCTGGTCAACGTGTTCATATCTACCTTCAACGGTGCAGGAGCTGGTACACCTCCCATACCGGAAACAGGCGGCGTGGTAGTTAATGTTACAAACCCTTCGACAGCATACGCGATACCATGAGCAGTAAAGCAACTTTAGCAAATCAGTTGCGCATACTTTAGGAAACGGATTTTTTTCCAAGGCAATGTTATGATACGAATTGTTAACGATAAGTTTTTGAAATGTTACCTAATTTTCANAGGAATTTTCAAGGAGCTAGATATACGTTACAATCAGTTCATCGCGTTTCTCGGAATAATTAGAGCAGATACATTTTTTTATCTGCGAAGTAAGCAAAGTAGATATAGACATGGGTCCAAAAGTCTCTTACCTCTTACCGGTGAGGTGCGGCACGGTCTAACTAGATTAAGGAGATTAATGACGAAACTGACACGGAATGGAATTTCGGCTTGCAGTGATAAGGTGACGGTTTTCTCTAATCGTCAGACATTTTTATCAGTGTCACTGCTTGCNATAGGAGATTGAGGGACATTAAAAAAACATCGCATACGCAATTCGTCCTAAGATTNTGAGGATCACCGGTAGATCACTG]

[+] EMBL AL933185             [AATNCCCCGAGGTTAACAGAAGTGAGATAAGGCAGCCTCGCACATGAACAATCTTTCCGTGGCGGGTGTGTTTATGGTAACGCTGGTCAACGTGTTCATATCTACCTTCAACGGTGCAGGAGCTGGTACACCTCCCATACCGGAAACAGGCGGCGTGGTAGTTAATGTTACAAACCCTTCGACAGCATACGCGATACCATGAGCAGTAAAGCAACTTTAGCAAATCAGTTGCGCATACTTTAGGAAACGGATTTTTTTCCAAGGCAATGTTATGATACGAATTGTTAACGATAAGTTTTTGAAATGTTACCTAATTTTCANAGGAATTTTCAAGGAGCTAGATATACGTTACAATCAGTTCATCGCGTTTCTCGGAATAATTAGAGCAGATACATTTTTTTATCTGCGAAGTAAGCAAAGTAGATATAGACATGGGTCCAAAAGTCTCTTACCTCTTACCGGTGAGGTGCGGCACGGTCTAACTAGATTAAGGAGATTAATGACGAAACTGACACGGAATGGAATTTCGGCTTGCAGTGATAAGGTGACGGTTTTCTCTAATCGTCAGACATTTTTATCAGTGTCACTGCTTGCNATAGGAGATTGAGGGACATTAAAAAAACATCGCATACGCAATTCGTCCTAAGATTNTGAGGATCACCGGTAGATCACTG]




>consensus_1920#0
AATNCCCCGAGGTTAACAGAAGTGAGATAAGGCAGCCTCGCACATGAACAATCTTTCCGT
GGCGGGTGTGTTTATGGTAACGCTGGTCAACGTGTTCATATCTACCTTCAACGGTGCAGG
AGCTGGTACACCTCCCATACCGGAAACAGGCGGCGTGGTAGTTAATGTTACAAACCCTTC
GACAGCATACGCGATACCATGAGCAGTAAAGCAACTTTAGCAAATCAGTTGCGCATACTT
TAGGAAACGGATTTTTTTCCAAGGCAATGTTATGATACGAATTGTTAACGATAAGTTTTT
GAAATGTTACCTAATTTTCANAGGAATTTTCAAGGAGCTAGATATACGTTACAATCAGTT
CATCGCGTTTCTCGGAATAATTAGAGCAGATACATTTTTTTATCTGCGAAGTAAGCAAAG
TAGATATAGACATGGGTCCAAAAGTCTCTTACCTCTTACCGGTGAGGTGCGGCACGGTCT
AACTAGATTAAGGAGATTAATGACGAAACTGACACGGAATGGAATTTCGGCTTGCAGTGA
TAAGGTGACGGTTTTCTCTAATCGTCAGACATTTTTATCAGTGTCACTGCTTGCNATAGG
AGATTGAGGGACATTAAAAAAACATCGCATACGCAATTCGTCCTAAGATTNTGAGGATCA
CCGGTAGATCACTG

consensusID : consensus_1920#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [CCCCGGAGATATGTGACCAGGAAAAGGGACAACTTCAACTGCAGAAAAGTGAAGAGTCGGACCAGCGTGAACCCACCAACAAACAAATTAATGCAGAGCTGAGCAGCTTCGTGCAGAAGAAATCGTTCGCCCAGAACATGATGGACATTGCCCTGCTGTCGGCAAACACGAATCAGCTGCGGTACGTAATCGATCTGGGGGACAAGCATCCATACTACATGACCAGTCTGATGCTGATCATCGTCAGTCTCGTGATGCAGGTAGTCGTNGGCCTATCGATGCTGTACGTGAATAGATACAACATGAAGAACAGAAGTGAGATAAAGGCAGCCTCGCACATGAACAATCTNTNCGTGGCGGGTGTGTTTATGGTAACGCTGGTCAACGTGTTCATATCTACCTTCAACNGTGCAGGAGCT]

[+] EMBL BX624228             [CCCCGGAGATATGTGACCAGGAAAAGGGACAACTTCAACTGCAGAAAAGTGAAGAGTCGGACCAGCGTGAACCCACCAACAAACAAATTAATGCAGAGCTGAGCAGCTTCGTGCAGAAGAAATCGTTCGCCCAGAACATGATGGACATTGCCCTGCTGTCGGCAAACACGAATCAGCTGCGGTACGTAATCGATCTGGGGGACAAGCATCCATACTACATGACCAGTCTGATGCTGATCATCGTCAGTCTCGTGATGCAGGTAGTCGTNGGCCTATCGATGCTGTACGTGAATAGATACAACATGAAGAACAGAAGTGAGATAAAGGCAGCCTCGCACATGAACAATCTNTNCGTGGCGGGTGTGTTTATGGTAACGCTGGTCAACGTGTTCATATCTACCTTCAACNGTGCAGGAGCT]




>consensus_1920#1
CCCCGGAGATATGTGACCAGGAAAAGGGACAACTTCAACTGCAGAAAAGTGAAGAGTCGG
ACCAGCGTGAACCCACCAACAAACAAATTAATGCAGAGCTGAGCAGCTTCGTGCAGAAGA
AATCGTTCGCCCAGAACATGATGGACATTGCCCTGCTGTCGGCAAACACGAATCAGCTGC
GGTACGTAATCGATCTGGGGGACAAGCATCCATACTACATGACCAGTCTGATGCTGATCA
TCGTCAGTCTCGTGATGCAGGTAGTCGTNGGCCTATCGATGCTGTACGTGAATAGATACA
ACATGAAGAACAGAAGTGAGATAAAGGCAGCCTCGCACATGAACAATCTNTNCGTGGCGG
GTGTGTTTATGGTAACGCTGGTCAACGTGTTCATATCTACCTTCAACNGTGCAGGAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1920#0      AATNCCCCGAGGTTAACAGAAGTGAGATAAGGCAGCCTCGCACATGAACAATCTTTCCGT 60
consensus_1920#1      ------------------CCCCGGAGATATG-TGACCAGGAAAAGGGACAAC--TTCAAC 39
                                             ****** *    **  * * * * ****   ***   

consensus_1920#0      GGCGGGTGTGTTTATGGTAACGCTGGTCAACGTGTTCATATCTACCTTCAA--CGGTGCA 118
consensus_1920#1      TGCAGAAAAGTGAAGAGT----CGGACCAGCGTGAACCCACCAACAAACAAATTAATGCA 95
                       ** *    **  *  **    * *  ** ****  *  * * **   ***     ****

consensus_1920#0      GGAGCTGGTACACCTCCCATACCGGAAACAGGCGGCGTGGTAGTTAATGT-TACAAACCC 177
consensus_1920#1      G-AGCTGAGCAGCTTCGTGCAGAAGAAATCGTTCGCCCAGAACATGATGGACATTGCCCT 154
                      * *****     * **    *   ****  *   **   * *  * ***   *    ** 

consensus_1920#0      TTCGACAGCATACGCGATACCATGAGCAGTA---AAGCAACTTTAGCAAATCAGTTGCGC 234
consensus_1920#1      GCTGTCGGCAAACACGA-ATCAGCTGCGGTACGTAATCGATCTGGGGGA--CAAGCATCC 211
                         * * *** ** *** * **   ** ***   ** * *  *  *  *  **      *

consensus_1920#0      ATACTTTAGGA---AACGGATTTTTTTCCAAGGCAATGTTATGATACGAATTGTTAACGA 291
consensus_1920#1      ATACTACATGACCAGTCTGATGCTGATCATCGTCAGTCTCGTGATGCAGGTAGT---CGT 268
                      *****  * **     * ***  *  **   * ** * *  **** *   * **   ** 

consensus_1920#0      TAAGTTTTTGAAATGTTACCTAATTTTCANAGGAATTTTCAAGGAGCTAGATATACGTTA 351
consensus_1920#1      NGGCCTATCGATGCTGTACGTGAAT---AGATACAACATGAAGAA--CAGAAGTGAGATA 323
                           * * **     *** * * *   * *   *   * *** *   ***  *  * **

consensus_1920#0      CAATCAGTTCATCGCGTTTCTCGGAATAATTAGAGCA-GATACATTTTTTTATCTGCGAA 410
consensus_1920#1      AAGGCAGCCTCGCACAT------GAACAATCTNTNCGTGGCGGGTGTGTTTATGGTAACG 377
                       *  ***     * * *      *** ***     *  *     * * *****       

consensus_1920#0      GTAAGCAAAGTAGATATAGACATGGGTCCAAAAGTCTCTTACCTCTTACCGGTGAGGTGC 470
consensus_1920#1      CTGGTCAACGTGTTCAT--ATCTACCTTCAACNGTGCAGGAGCT---------------- 419
                       *   *** **    **  *  *   * ***  **     * **                

consensus_1920#0      GGCACGGTCTAACTAGATTAAGGAGATTAATGACGAAACTGACACGGAATGGAATTTCGG 530
consensus_1920#1      ------------------------------------------------------------
                                                                                  

consensus_1920#0      CTTGCAGTGATAAGGTGACGGTTTTCTCTAATCGTCAGACATTTTTATCAGTGTCACTGC 590
consensus_1920#1      ------------------------------------------------------------
                                                                                  

consensus_1920#0      TTGCNATAGGAGATTGAGGGACATTAAAAAAACATCGCATACGCAATTCGTCCTAAGATT 650
consensus_1920#1      ------------------------------------------------------------
                                                                                  

consensus_1920#0      NTGAGGATCACCGGTAGATCACTG 674
consensus_1920#1      ------------------------