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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 880 fasta sequence
[GCCAGAATGCCATGAGGCGCGAAGTGCATTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAAAATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGATGCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCCAGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTCGCTACGGCAAGCCCAACTTTGATCCGTGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTTAACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGGCGATCTCGGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAGTCGGAGGTGACCAAGTACCGGACCGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTCTTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCCTGCCGCGCCATACGCGGGGTGTGTGGAATCTGACGCTGTACAACTACAGCCAGACGACGACGGTTAACGCGCATCGGGTGGGACCAAGGGGGGCTGCTTGAAAGGTGCCGGGTTCCGAGGAATCGACAANGAATCGGGCGATATTGAAGCTTGCACGATTCTCCGAACCTTGGTTTCATCGGGGCCGAAAAATTTTATCGNGAAATCAATTGNCCNGACATTTCTTTCATTCAAACACGAATTTTTGGGCCAACCCGAATTTTCCCCGTTTCAATNNCAAACCCCNTTTATTCACAGAATTCTCCGTAAGGTTTCCAC]
[+] EMBL BX467882 [GCCAGAATGCCATGAGGCGCGAAGTGCATTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAAAATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGATGCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCCAGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTCGCTACGGCAAGCCCAACTTTGATCCGTGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTTAACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGGCGATCTCGGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAGTCGGAGGTGACCAAGTACCGGACCGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTCTTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCCTGCCGCGCCATACGCGGGGTGTGTGGAATCTGACGCTGTACAACTACAGCCAGACGACGACGGTTAACGCGCATCGGGTGGGACCAAGGGGGGCTGCTTGAAAGGTGCCGGGTTCCGAGGAATCGACAANGAATCGGGCGATATTGAAGCTTGCACGATTCTCCGAACCTTGGTTTCATCGGGGCCGAAAAATTTTATCGNGAAATCAATTGNCCNGACATTTCTTTCATTCAAACACGAATTTTTGGGCCAACCCGAATTTTCCCCGTTTCAATNNCAAACCCCNTTTATTCACAGAATTCTCCGTAAGGTTTCCAC]
consensusID : consensus_1936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[AATCCCCCGAGGTTAACCAAGAGCTAGCTAGACATCGTCTCGAACCTCCGNTGAAGTGCATTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAAAATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGATGCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCCAGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTACGCTACGGCAAGCCCAACTTTGATCCGTGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTTAACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGCGATCTCGGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAGTCGGAGGTGACCAAGTACCGGACGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTCTTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCTGCCGCGCCATACGCGGGTGTGTGGNATCTGACGCTGTACAATACAGCCAGACGACGACGGTGACGCGCATCGGTGGAC]
[+] EMBL AL694801 [AATCCCCCGAGGTTAACCAAGAGCTAGCTAGACATCGTCTCGAACCTCCGNTGAAGTGCATTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAAAATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGATGCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCCAGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTACGCTACGGCAAGCCCAACTTTGATCCGTGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTTAACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGCGATCTCGGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAGTCGGAGGTGACCAAGTACCGGACGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTCTTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCTGCCGCGCCATACGCGGGTGTGTGGNATCTGACGCTGTACAATACAGCCAGACGACGACGGTGACGCGCATCGGTGGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1936#0 --------------------------GCCAGAA--TGCCATGAGGC----GCGAAGTGCA 28
consensus_1936#1 AATCCCCCGAGGTTAACCAAGAGCTAGCTAGACATCGTCTCGAACCTCCGNTGAAGTGCA 60
** *** * * ** * ********
consensus_1936#0 TTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAA 88
consensus_1936#1 TTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAA 120
************************************************************
consensus_1936#0 AATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGAT 148
consensus_1936#1 AATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGAT 180
************************************************************
consensus_1936#0 GCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCC 208
consensus_1936#1 GCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCC 240
************************************************************
consensus_1936#0 AGCGGGAAGTGTTTCGGCTGTTCGCGAACTGT-CGCTACGGCAAGCCCAACTTTGATCCG 267
consensus_1936#1 AGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTACGCTACGGCAAGCCCAACTTTGATCCG 300
******************************** ***************************
consensus_1936#0 TGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTT 327
consensus_1936#1 TGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTT 360
************************************************************
consensus_1936#0 AACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGGCGATCTC 387
consensus_1936#1 AACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGG-CGATCTC 419
**************************************************** *******
consensus_1936#0 GGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAG 447
consensus_1936#1 GGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAG 479
************************************************************
consensus_1936#0 TCGGAGGTGACCAAGTACCGGACCGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTC 507
consensus_1936#1 TCGGAGGTGACCAAGTACCGGAC-GAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTC 538
*********************** ************************************
consensus_1936#0 TTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCCTGCCG 567
consensus_1936#1 TTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGC-TGCCG 597
****************************************************** *****
consensus_1936#0 CGCCATACGCGGGGTGTGTGGAATCTGACGCTGTACAACTACAGCCAGACGACGACGGTT 627
consensus_1936#1 CGCCATACGCGGG-TGTGTGGNATCTGACGCTGTACAA-TACAGCCAGACGACGACGGT- 654
************* ******* **************** ********************
consensus_1936#0 AACGCGCATCGGGTGGGACCAAGGGGGGCTGCTTGAAAGGTGCCGGGTTCCGAGGAATCG 687
consensus_1936#1 GACGCGCATCGGT--GGAC----------------------------------------- 671
*********** ****
consensus_1936#0 ACAANGAATCGGGCGATATTGAAGCTTGCACGATTCTCCGAACCTTGGTTTCATCGGGGC 747
consensus_1936#1 ------------------------------------------------------------
consensus_1936#0 CGAAAAATTTTATCGNGAAATCAATTGNCCNGACATTTCTTTCATTCAAACACGAATTTT 807
consensus_1936#1 ------------------------------------------------------------
consensus_1936#0 TGGGCCAACCCGAATTTTCCCCGTTTCAATNNCAAACCCCNTTTATTCACAGAATTCTCC 867
consensus_1936#1 ------------------------------------------------------------
consensus_1936#0 GTAAGGTTTCCAC 880
consensus_1936#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||