cluster # 1946

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Anopheles gambiae
cluster # 1946 cluster # 1946 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1946#0 length = 801 sequences # 1

consensus_1946#1 length = 591 sequences # 1

consensusID : consensus_1946#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 801
fasta sequence

                              [AGGAATTGCGAGTCGATTGAAGAAAGTGGGCAGACCCAGAAAATCGACACTCTCTTTAAGCATCGATTATGAGCAGGAAGAAAAGAGCGATAAAAAAATTAGGCGCTTTCATAAGAATGTCTTAACGAAAGAGACCATTTTAAAATTCATCGCCGTTATGGAGCGCACTCCCTGTCTGTGGAATCCGAATGATCCGGCATACAAAAAGAAGCAAGAGCGTAAGTCTGAAGCATGGCGCGAAGTGTCGAAGAAGGTTGGAGTATCCGCTGCTAAGCTGCGGAGCAAGTGGGCAGTCCTAAAATCAACATACCGTGCCCACCGCACTAAGTTTGACAAGCAAATACCATTCGCATGGTACGCGTACGATGCGATGAGCTTCCTCGAAGGGTTACTCGATAAGAAGCCATCGCCTGCTTTTGTTGCTGTGGATCCAAAAGATCATGCATCTGAATTGAACGATGAAACGAAATCCGAGGTAGTGCATTGCGAAGAGGACGACTACGGCAGCAAATACATCATCGAAGAGATAGTAGACCAGGCTGCAGTACAACCAGAAACACAGGACAAAGGGATGCATATAGAAAGTATAACAACGTCCAGCAGCAGCAGCACCAGCAGTAGTAGCAGCAGTAGTAGCAGCAGCACAACAACAACGCCTCTCATCGTTCAAGCTGTTCAGGGACAGGTGGATCGGTCGTGGTGGCCGCAGCCGGACCGGTGTAAGCTCTTCAGTCAGTGCGTCGGTATGCGGATGGTAAACTTCTCGCTGCAGCAGCAAAGCTTCGCCGAAAAGATGATCAA]

[+] EMBL BX621892             [AGGAATTGCGAGTCGATTGAAGAAAGTGGGCAGACCCAGAAAATCGACACTCTCTTTAAGCATCGATTATGAGCAGGAAGAAAAGAGCGATAAAAAAATTAGGCGCTTTCATAAGAATGTCTTAACGAAAGAGACCATTTTAAAATTCATCGCCGTTATGGAGCGCACTCCCTGTCTGTGGAATCCGAATGATCCGGCATACAAAAAGAAGCAAGAGCGTAAGTCTGAAGCATGGCGCGAAGTGTCGAAGAAGGTTGGAGTATCCGCTGCTAAGCTGCGGAGCAAGTGGGCAGTCCTAAAATCAACATACCGTGCCCACCGCACTAAGTTTGACAAGCAAATACCATTCGCATGGTACGCGTACGATGCGATGAGCTTCCTCGAAGGGTTACTCGATAAGAAGCCATCGCCTGCTTTTGTTGCTGTGGATCCAAAAGATCATGCATCTGAATTGAACGATGAAACGAAATCCGAGGTAGTGCATTGCGAAGAGGACGACTACGGCAGCAAATACATCATCGAAGAGATAGTAGACCAGGCTGCAGTACAACCAGAAACACAGGACAAAGGGATGCATATAGAAAGTATAACAACGTCCAGCAGCAGCAGCACCAGCAGTAGTAGCAGCAGTAGTAGCAGCAGCACAACAACAACGCCTCTCATCGTTCAAGCTGTTCAGGGACAGGTGGATCGGTCGTGGTGGCCGCAGCCGGACCGGTGTAAGCTCTTCAGTCAGTGCGTCGGTATGCGGATGGTAAACTTCTCGCTGCAGCAGCAAAGCTTCGCCGAAAAGATGATCAA]




>consensus_1946#0
AGGAATTGCGAGTCGATTGAAGAAAGTGGGCAGACCCAGAAAATCGACACTCTCTTTAAG
CATCGATTATGAGCAGGAAGAAAAGAGCGATAAAAAAATTAGGCGCTTTCATAAGAATGT
CTTAACGAAAGAGACCATTTTAAAATTCATCGCCGTTATGGAGCGCACTCCCTGTCTGTG
GAATCCGAATGATCCGGCATACAAAAAGAAGCAAGAGCGTAAGTCTGAAGCATGGCGCGA
AGTGTCGAAGAAGGTTGGAGTATCCGCTGCTAAGCTGCGGAGCAAGTGGGCAGTCCTAAA
ATCAACATACCGTGCCCACCGCACTAAGTTTGACAAGCAAATACCATTCGCATGGTACGC
GTACGATGCGATGAGCTTCCTCGAAGGGTTACTCGATAAGAAGCCATCGCCTGCTTTTGT
TGCTGTGGATCCAAAAGATCATGCATCTGAATTGAACGATGAAACGAAATCCGAGGTAGT
GCATTGCGAAGAGGACGACTACGGCAGCAAATACATCATCGAAGAGATAGTAGACCAGGC
TGCAGTACAACCAGAAACACAGGACAAAGGGATGCATATAGAAAGTATAACAACGTCCAG
CAGCAGCAGCACCAGCAGTAGTAGCAGCAGTAGTAGCAGCAGCACAACAACAACGCCTCT
CATCGTTCAAGCTGTTCAGGGACAGGTGGATCGGTCGTGGTGGCCGCAGCCGGACCGGTG
TAAGCTCTTCAGTCAGTGCGTCGGTATGCGGATGGTAAACTTCTCGCTGCAGCAGCAAAG
CTTCGCCGAAAAGATGATCAA

consensusID : consensus_1946#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [CCGAGGTTAAAACAGAGGAAGGAATAGCGAGTCGATTGAAGAAAGTGGGCAGGCCCAGAAAATCGACACTCTCTTTAAGCATCGATTATGAGCCGGAAGAAAAGAGCGATAGAAAAATTAGGCGCTTTCATAAGAATGTCTTAACGAAAGAGACGATTTTAAAATTCATCGCCGTTATGGAGCGCACTCCCTGTCTGTGGAATCCGAATGATCCGGCATACAAAAAGAAGCAAGAGCGCAAGTCTGAAGCATGGCGCGAAGTGTCGAAGAAGGTTGGAGTTTCCGCTGCTAAGCTGCGGAGCAAGTGGGCAGTCCTAAAATCTACATACCGTGCCCACCGCACTAAGTTTGGTAATGAGGTTGAAAATGGCACAGGAAGAGTGTCCCTGGAGTGCTAATAATCGTTCTTTTTTTTAATGCCAGACAAGCAAATACCATTCGCATGGTACGCGTACGATGCGATGAGCTTCCTCGAAGGGTTACTCGATAAGAAGCCATCGCCTGCTTTGTTGCTGTGGATCCAAAATTGCAGGATCATGCATCTGAATTGAACGATGAAACGAAATCCGAGGAAGTGCATGGTGAAGAGGA]

[+] EMBL AL694850             [CCGAGGTTAAAACAGAGGAAGGAATAGCGAGTCGATTGAAGAAAGTGGGCAGGCCCAGAAAATCGACACTCTCTTTAAGCATCGATTATGAGCCGGAAGAAAAGAGCGATAGAAAAATTAGGCGCTTTCATAAGAATGTCTTAACGAAAGAGACGATTTTAAAATTCATCGCCGTTATGGAGCGCACTCCCTGTCTGTGGAATCCGAATGATCCGGCATACAAAAAGAAGCAAGAGCGCAAGTCTGAAGCATGGCGCGAAGTGTCGAAGAAGGTTGGAGTTTCCGCTGCTAAGCTGCGGAGCAAGTGGGCAGTCCTAAAATCTACATACCGTGCCCACCGCACTAAGTTTGGTAATGAGGTTGAAAATGGCACAGGAAGAGTGTCCCTGGAGTGCTAATAATCGTTCTTTTTTTTAATGCCAGACAAGCAAATACCATTCGCATGGTACGCGTACGATGCGATGAGCTTCCTCGAAGGGTTACTCGATAAGAAGCCATCGCCTGCTTTGTTGCTGTGGATCCAAAATTGCAGGATCATGCATCTGAATTGAACGATGAAACGAAATCCGAGGAAGTGCATGGTGAAGAGGA]




>consensus_1946#1
CCGAGGTTAAAACAGAGGAAGGAATAGCGAGTCGATTGAAGAAAGTGGGCAGGCCCAGAA
AATCGACACTCTCTTTAAGCATCGATTATGAGCCGGAAGAAAAGAGCGATAGAAAAATTA
GGCGCTTTCATAAGAATGTCTTAACGAAAGAGACGATTTTAAAATTCATCGCCGTTATGG
AGCGCACTCCCTGTCTGTGGAATCCGAATGATCCGGCATACAAAAAGAAGCAAGAGCGCA
AGTCTGAAGCATGGCGCGAAGTGTCGAAGAAGGTTGGAGTTTCCGCTGCTAAGCTGCGGA
GCAAGTGGGCAGTCCTAAAATCTACATACCGTGCCCACCGCACTAAGTTTGGTAATGAGG
TTGAAAATGGCACAGGAAGAGTGTCCCTGGAGTGCTAATAATCGTTCTTTTTTTTAATGC
CAGACAAGCAAATACCATTCGCATGGTACGCGTACGATGCGATGAGCTTCCTCGAAGGGT
TACTCGATAAGAAGCCATCGCCTGCTTTGTTGCTGTGGATCCAAAATTGCAGGATCATGC
ATCTGAATTGAACGATGAAACGAAATCCGAGGAAGTGCATGGTGAAGAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1946#0      -------------------AGGAATTGCGAGTCGATTGAAGAAAGTGGGCAGACCCAGAA 41
consensus_1946#1      CCGAGGTTAAAACAGAGGAAGGAATAGCGAGTCGATTGAAGAAAGTGGGCAGGCCCAGAA 60
                                         ****** ************************** *******

consensus_1946#0      AATCGACACTCTCTTTAAGCATCGATTATGAGCAGGAAGAAAAGAGCGATAAAAAAATTA 101
consensus_1946#1      AATCGACACTCTCTTTAAGCATCGATTATGAGCCGGAAGAAAAGAGCGATAGAAAAATTA 120
                      ********************************* ***************** ********

consensus_1946#0      GGCGCTTTCATAAGAATGTCTTAACGAAAGAGACCATTTTAAAATTCATCGCCGTTATGG 161
consensus_1946#1      GGCGCTTTCATAAGAATGTCTTAACGAAAGAGACGATTTTAAAATTCATCGCCGTTATGG 180
                      ********************************** *************************

consensus_1946#0      AGCGCACTCCCTGTCTGTGGAATCCGAATGATCCGGCATACAAAAAGAAGCAAGAGCGTA 221
consensus_1946#1      AGCGCACTCCCTGTCTGTGGAATCCGAATGATCCGGCATACAAAAAGAAGCAAGAGCGCA 240
                      ********************************************************** *

consensus_1946#0      AGTCTGAAGCATGGCGCGAAGTGTCGAAGAAGGTTGGAGTATCCGCTGCTAAGCTGCGGA 281
consensus_1946#1      AGTCTGAAGCATGGCGCGAAGTGTCGAAGAAGGTTGGAGTTTCCGCTGCTAAGCTGCGGA 300
                      **************************************** *******************

consensus_1946#0      GCAAGTGGGCAGTCCTAAAATCAACATACCGTGCCCACCGCACTAAGTTTG--------- 332
consensus_1946#1      GCAAGTGGGCAGTCCTAAAATCTACATACCGTGCCCACCGCACTAAGTTTGGTAATGAGG 360
                      ********************** ****************************         

consensus_1946#0      ------------------------------------------------------------
consensus_1946#1      TTGAAAATGGCACAGGAAGAGTGTCCCTGGAGTGCTAATAATCGTTCTTTTTTTTAATGC 420
                                                                                  

consensus_1946#0      ---ACAAGCAAATACCATTCGCATGGTACGCGTACGATGCGATGAGCTTCCTCGAAGGGT 389
consensus_1946#1      CAGACAAGCAAATACCATTCGCATGGTACGCGTACGATGCGATGAGCTTCCTCGAAGGGT 480
                         *********************************************************

consensus_1946#0      TACTCGATAAGAAGCCATCGCCTGCTTTTGTTGCTGTGGATCCAAAA------GATCATG 443
consensus_1946#1      TACTCGATAAGAAGCCATCGCCTGCTTT-GTTGCTGTGGATCCAAAATTGCAGGATCATG 539
                      **************************** ******************      *******

consensus_1946#0      CATCTGAATTGAACGATGAAACGAAATCCGAGGTAGTGCATTGCGAAGAGGACGACTACG 503
consensus_1946#1      CATCTGAATTGAACGATGAAACGAAATCCGAGGAAGTGCATGGTGAAGAGGA-------- 591
                      ********************************* ******* * ********        

consensus_1946#0      GCAGCAAATACATCATCGAAGAGATAGTAGACCAGGCTGCAGTACAACCAGAAACACAGG 563
consensus_1946#1      ------------------------------------------------------------
                                                                                  

consensus_1946#0      ACAAAGGGATGCATATAGAAAGTATAACAACGTCCAGCAGCAGCAGCACCAGCAGTAGTA 623
consensus_1946#1      ------------------------------------------------------------
                                                                                  

consensus_1946#0      GCAGCAGTAGTAGCAGCAGCACAACAACAACGCCTCTCATCGTTCAAGCTGTTCAGGGAC 683
consensus_1946#1      ------------------------------------------------------------
                                                                                  

consensus_1946#0      AGGTGGATCGGTCGTGGTGGCCGCAGCCGGACCGGTGTAAGCTCTTCAGTCAGTGCGTCG 743
consensus_1946#1      ------------------------------------------------------------
                                                                                  

consensus_1946#0      GTATGCGGATGGTAAACTTCTCGCTGCAGCAGCAAAGCTTCGCCGAAAAGATGATCAA 801
consensus_1946#1      ----------------------------------------------------------