cluster # 1954

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Anopheles gambiae
cluster # 1954 cluster # 1954 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1954#0 length = 673 sequences # 1

consensus_1954#1 length = 650 sequences # 1

consensusID : consensus_1954#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [GCAAGAATCGGCACNTTGGGCAAGCGCGACAGGAGAAGCAGAAGCAAAAAACGACGGTGGATGATTTGGAGCCGCTGAAAGAAACGGTCACCGTTGTAACGACGCCGGTTGCAGTACGCTTTGGAAAGTCCCCGAAGCGTTCATCCGTGCAGCAGCGGCGCTCTAGTATATGCCCGGGTGGTACGCCGATCGTATCCGACTGGGAACAGCCATCGGAACCGGAAGAGCTCACCAAGCGACGTACCATTTTCCCCGAGATTACGCAGCAAAAAACGGAAGATGTAAAGTCGATTCTGAAAACGCCAAAGGTTAAGAACGGCCGGCGGGCGAAGAGTGTCCTCTTTCTCGATTCCGGCCTGGATACACCGGAAACCCGCTGTCGGCACACATCCCGTATCGATCGTGGACACACCGAAGCCGAAGATCAAATTTAACGACGAGCTCGAAATCGAGCACATCGACAACCTGGCCACCGAGTCGAAACCAGTGGAAGACGAAACCATTGCTGGCCAAGCAAATTTAACGCGAGAGGAGAAGGTTCAACCATGTTCTGTCGGTGAGGATGACGCTATTCCCAAGCACTTCCACCAGCAATACANCCTCTCCGTCGTAGCCGTCGCAACTCGGTACGAATCATAGAGCCAGCGGTGGTCGAGCCGAACGACGATCCAGC]

[+] EMBL BX467186             [GCAAGAATCGGCACNTTGGGCAAGCGCGACAGGAGAAGCAGAAGCAAAAAACGACGGTGGATGATTTGGAGCCGCTGAAAGAAACGGTCACCGTTGTAACGACGCCGGTTGCAGTACGCTTTGGAAAGTCCCCGAAGCGTTCATCCGTGCAGCAGCGGCGCTCTAGTATATGCCCGGGTGGTACGCCGATCGTATCCGACTGGGAACAGCCATCGGAACCGGAAGAGCTCACCAAGCGACGTACCATTTTCCCCGAGATTACGCAGCAAAAAACGGAAGATGTAAAGTCGATTCTGAAAACGCCAAAGGTTAAGAACGGCCGGCGGGCGAAGAGTGTCCTCTTTCTCGATTCCGGCCTGGATACACCGGAAACCCGCTGTCGGCACACATCCCGTATCGATCGTGGACACACCGAAGCCGAAGATCAAATTTAACGACGAGCTCGAAATCGAGCACATCGACAACCTGGCCACCGAGTCGAAACCAGTGGAAGACGAAACCATTGCTGGCCAAGCAAATTTAACGCGAGAGGAGAAGGTTCAACCATGTTCTGTCGGTGAGGATGACGCTATTCCCAAGCACTTCCACCAGCAATACANCCTCTCCGTCGTAGCCGTCGCAACTCGGTACGAATCATAGAGCCAGCGGTGGTCGAGCCGAACGACGATCCAGC]




>consensus_1954#0
GCAAGAATCGGCACNTTGGGCAAGCGCGACAGGAGAAGCAGAAGCAAAAAACGACGGTGG
ATGATTTGGAGCCGCTGAAAGAAACGGTCACCGTTGTAACGACGCCGGTTGCAGTACGCT
TTGGAAAGTCCCCGAAGCGTTCATCCGTGCAGCAGCGGCGCTCTAGTATATGCCCGGGTG
GTACGCCGATCGTATCCGACTGGGAACAGCCATCGGAACCGGAAGAGCTCACCAAGCGAC
GTACCATTTTCCCCGAGATTACGCAGCAAAAAACGGAAGATGTAAAGTCGATTCTGAAAA
CGCCAAAGGTTAAGAACGGCCGGCGGGCGAAGAGTGTCCTCTTTCTCGATTCCGGCCTGG
ATACACCGGAAACCCGCTGTCGGCACACATCCCGTATCGATCGTGGACACACCGAAGCCG
AAGATCAAATTTAACGACGAGCTCGAAATCGAGCACATCGACAACCTGGCCACCGAGTCG
AAACCAGTGGAAGACGAAACCATTGCTGGCCAAGCAAATTTAACGCGAGAGGAGAAGGTT
CAACCATGTTCTGTCGGTGAGGATGACGCTATTCCCAAGCACTTCCACCAGCAATACANC
CTCTCCGTCGTAGCCGTCGCAACTCGGTACGAATCATAGAGCCAGCGGTGGTCGAGCCGA
ACGACGATCCAGC

consensusID : consensus_1954#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence

                              [CCGGCCAGCGGCTGGCACCAAAGCGTCGTCCTCCGTCATTGCGGATCTGATACGCAAAGCGCGACAGGAGAAGCAAAAGCAAAAAACGACGGTGGAAGATTTGGAGCCGCTGAAAGAAACGGTCACCGTTGTAACGACGCCGGAAAAGCGTGCAGTACGCTTCGGAAAGTCCCCGAAACGTTCCTCCCTGCAGCAGCGGCGCTCTAGTATATGCCCGGGTGGTACACCGACCGTATTCCACTGGGAACAGCCATCGAAACCGGAAGAGCTTTCCAAGCGACGTACCATTTTTCCCGATATCACTCTGCAGAGGACGGAAGAGGTAAAGTCGATACTGAAAACGCCAAAGGTCAAGAACGACCGGCGGGCGAAGAGTGTCCTCTTTCTCGATTCCGGCCTGGATACGCCGCAAACCCGTCGCCGGCATACGTCGCGCTCGATCGTGGACACACCGAAGCCGAAGATCAAATTTAACGACGAGCTCGAGATCGAGCACATCGACAATCTGGCCGCCCGGACACCGTCCCGGCTGGATATGGAGATACAGAAGCGGCTCAGACATTCGCAGCTGCTGAATGCATCTGCCGTGTCCGTTCCGGCCAGCGAAAGCAACCAACAGTCGGACGACAGCGTGGACACAGACGATGCGA]

[+] EMBL BM603120             [CCGGCCAGCGGCTGGCACCAAAGCGTCGTCCTCCGTCATTGCGGATCTGATACGCAAAGCGCGACAGGAGAAGCAAAAGCAAAAAACGACGGTGGAAGATTTGGAGCCGCTGAAAGAAACGGTCACCGTTGTAACGACGCCGGAAAAGCGTGCAGTACGCTTCGGAAAGTCCCCGAAACGTTCCTCCCTGCAGCAGCGGCGCTCTAGTATATGCCCGGGTGGTACACCGACCGTATTCCACTGGGAACAGCCATCGAAACCGGAAGAGCTTTCCAAGCGACGTACCATTTTTCCCGATATCACTCTGCAGAGGACGGAAGAGGTAAAGTCGATACTGAAAACGCCAAAGGTCAAGAACGACCGGCGGGCGAAGAGTGTCCTCTTTCTCGATTCCGGCCTGGATACGCCGCAAACCCGTCGCCGGCATACGTCGCGCTCGATCGTGGACACACCGAAGCCGAAGATCAAATTTAACGACGAGCTCGAGATCGAGCACATCGACAATCTGGCCGCCCGGACACCGTCCCGGCTGGATATGGAGATACAGAAGCGGCTCAGACATTCGCAGCTGCTGAATGCATCTGCCGTGTCCGTTCCGGCCAGCGAAAGCAACCAACAGTCGGACGACAGCGTGGACACAGACGATGCGA]




>consensus_1954#1
CCGGCCAGCGGCTGGCACCAAAGCGTCGTCCTCCGTCATTGCGGATCTGATACGCAAAGC
GCGACAGGAGAAGCAAAAGCAAAAAACGACGGTGGAAGATTTGGAGCCGCTGAAAGAAAC
GGTCACCGTTGTAACGACGCCGGAAAAGCGTGCAGTACGCTTCGGAAAGTCCCCGAAACG
TTCCTCCCTGCAGCAGCGGCGCTCTAGTATATGCCCGGGTGGTACACCGACCGTATTCCA
CTGGGAACAGCCATCGAAACCGGAAGAGCTTTCCAAGCGACGTACCATTTTTCCCGATAT
CACTCTGCAGAGGACGGAAGAGGTAAAGTCGATACTGAAAACGCCAAAGGTCAAGAACGA
CCGGCGGGCGAAGAGTGTCCTCTTTCTCGATTCCGGCCTGGATACGCCGCAAACCCGTCG
CCGGCATACGTCGCGCTCGATCGTGGACACACCGAAGCCGAAGATCAAATTTAACGACGA
GCTCGAGATCGAGCACATCGACAATCTGGCCGCCCGGACACCGTCCCGGCTGGATATGGA
GATACAGAAGCGGCTCAGACATTCGCAGCTGCTGAATGCATCTGCCGTGTCCGTTCCGGC
CAGCGAAAGCAACCAACAGTCGGACGACAGCGTGGACACAGACGATGCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1954#0      ----------------------------------GCAAGAATCGGCACNTTGGGCAA-GC 25
consensus_1954#1      CCGGCCAGCGGCTGGCACCAAAGCGTCGTCCTCCGTCATTGCGGATCTGATACGCAAAGC 60
                                                        *  *     *      *  **** **

consensus_1954#0      GCGACAGGAGAAGCAGAAGCAAAAAACGACGGTGGATGATTTGGAGCCGCTGAAAGAAAC 85
consensus_1954#1      GCGACAGGAGAAGCAAAAGCAAAAAACGACGGTGGAAGATTTGGAGCCGCTGAAAGAAAC 120
                      *************** ******************** ***********************

consensus_1954#0      GGTCACCGTTGTAACGACGCCGGT------TGCAGTACGCTTTGGAAAGTCCCCGAAGCG 139
consensus_1954#1      GGTCACCGTTGTAACGACGCCGGAAAAGCGTGCAGTACGCTTCGGAAAGTCCCCGAAACG 180
                      ***********************       ************ ************** **

consensus_1954#0      TTCATCCGTGCAGCAGCGGCGCTCTAGTATATGCCCGGGTGGTACGCCGATCGTATCCGA 199
consensus_1954#1      TTCCTCCCTGCAGCAGCGGCGCTCTAGTATATGCCCGGGTGGTACACCGACCGTATTCCA 240
                      *** *** ************************************* **** ***** * *

consensus_1954#0      CTGGGAACAGCCATCGGAACCGGAAGAGCTCACCAAGCGACGTACCATTTTCCCCGAGAT 259
consensus_1954#1      CTGGGAACAGCCATCGAAACCGGAAGAGCTTTCCAAGCGACGTACCATTTTTCCCGATAT 300
                      **************** *************  ******************* ***** **

consensus_1954#0      TACGCAGCAAAAAACGGAAGATGTAAAGTCGATTCTGAAAACGCCAAAGGTTAAGAACGG 319
consensus_1954#1      CACTCTGCAGAGGACGGAAGAGGTAAAGTCGATACTGAAAACGCCAAAGGTCAAGAACGA 360
                       ** * *** *  ******** *********** ***************** ******* 

consensus_1954#0      CCGGCGGGCGAAGAGTGTCCTCTTTCTCGATTCCGGCCTGGATACACCGGAAACCCGCTG 379
consensus_1954#1      CCGGCGGGCGAAGAGTGTCCTCTTTCTCGATTCCGGCCTGGATACGCCGCAAACCCGTCG 420
                      ********************************************* *** *******  *

consensus_1954#0      TCGGCACACATCCCGTATCGATCGTGGACACACCGAAGCCGAAGATCAAATTTAACGACG 439
consensus_1954#1      CCGGCATACGTCGCGC-TCGATCGTGGACACACCGAAGCCGAAGATCAAATTTAACGACG 479
                       ***** ** ** **  *******************************************

consensus_1954#0      AGCTCGAAATCGAGCACATCGACAACCTGGCCACCGAGTCGAAA--CCAGTGGAAGACGA 497
consensus_1954#1      AGCTCGAGATCGAGCACATCGACAATCTGGCCGCCCGGACACCGTCCCGGCTGGATATGG 539
                      ******* ***************** ****** **  * *      ** *  * * * * 

consensus_1954#0      AACCATTGCTGGCCAAGCAAATTTAACGCGAGAGGAGAAGGT-TCAACCATGTTCTGTCG 556
consensus_1954#1      AGATACAGA-AGCGGCTCAGACATT-CGCAGCTGCTGAATGCATCTGCCGTGTCCGTTCC 597
                      *   *  *   **    ** *  *  ***    *  *** *  **  ** *** *  ** 

consensus_1954#0      GTGAGGATGACGCTATTCCCAAGCACTTCCACCAGCAATACANCCTCTCCGTCGTAGCCG 616
consensus_1954#1      G----------GCCAG---CGAAAGCAACCAACAGTCGGACGACAGCGTGGACACAGACG 644
                      *          ** *    * *   *  *** ***    **  *  *   * *  ** **

consensus_1954#0      TCGCAACTCGGTACGAATCATAGAGCCAGCGGTGGTCGAGCCGAACGACGATCCAGC 673
consensus_1954#1      ATGCGA--------------------------------------------------- 650
                        ** *