cluster # 1962

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Anopheles gambiae
cluster # 1962 cluster # 1962 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1962#0 length = 712 sequences # 1

consensus_1962#1 length = 374 sequences # 1

consensusID : consensus_1962#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence

                              [CCGTGCTGTTAGACGTATCGTTGAGTTCTTGCATGGAAACAGCAGTGGATTATTGGCAGCGTTAGCCAGACGACAGTAACAAACTAGATCGCTTGAACAGCTCTGCTCTCGTACGTGTAAGGGTACAAAAAAGTTTTTGAAAACTACTTTACCAATTTGTGGAAAAATTACATTTTACAGTGAAAACCCCTGCAGTGAAAGTGATAGCAACCACCACAACTGACAGAAACGAGCGTGCCATTCGGCAGGAAAGTAAAAACAACAACTAGACTGTGGCGCAGTGAAATCAGCGGACTTAATTGCATTAAAATCAATTCTTTTTTGTGTCACCTGAAAGTGCGATCGCAAATCACAAAAAATGAGTAAAATCTCGCGTGGTAGAGGCGGAAACTCTCGTTGCTACTCGTATTATGAAACGAGATTGATCCACGTTTCCCGCCACTATCACGAAATGGATGATGATGATTGCTGTGATATCTACAATCACAGCAACGCACCAAGATACAGCGTTAGAGAAAACAGCTCCTATAACTACACAAGCAACATTAGGCAGCAGCTGCCGCCCATTCAAAAAGCAGCCATCCAGCCAAAAGCTGCCGCTGCTTTGTCACCAATTGCCGTATCATCGAGCCAACAGCTTCAGTGGCCATTTTCCAAAGAAAGTATCATAAAGGTGCCAGTGGGGGATTAAAAAAAAGTGCTCCTCGTTCAT]

[+] EMBL BM590552             [CCGTGCTGTTAGACGTATCGTTGAGTTCTTGCATGGAAACAGCAGTGGATTATTGGCAGCGTTAGCCAGACGACAGTAACAAACTAGATCGCTTGAACAGCTCTGCTCTCGTACGTGTAAGGGTACAAAAAAGTTTTTGAAAACTACTTTACCAATTTGTGGAAAAATTACATTTTACAGTGAAAACCCCTGCAGTGAAAGTGATAGCAACCACCACAACTGACAGAAACGAGCGTGCCATTCGGCAGGAAAGTAAAAACAACAACTAGACTGTGGCGCAGTGAAATCAGCGGACTTAATTGCATTAAAATCAATTCTTTTTTGTGTCACCTGAAAGTGCGATCGCAAATCACAAAAAATGAGTAAAATCTCGCGTGGTAGAGGCGGAAACTCTCGTTGCTACTCGTATTATGAAACGAGATTGATCCACGTTTCCCGCCACTATCACGAAATGGATGATGATGATTGCTGTGATATCTACAATCACAGCAACGCACCAAGATACAGCGTTAGAGAAAACAGCTCCTATAACTACACAAGCAACATTAGGCAGCAGCTGCCGCCCATTCAAAAAGCAGCCATCCAGCCAAAAGCTGCCGCTGCTTTGTCACCAATTGCCGTATCATCGAGCCAACAGCTTCAGTGGCCATTTTCCAAAGAAAGTATCATAAAGGTGCCAGTGGGGGATTAAAAAAAAGTGCTCCTCGTTCAT]




>consensus_1962#0
CCGTGCTGTTAGACGTATCGTTGAGTTCTTGCATGGAAACAGCAGTGGATTATTGGCAGC
GTTAGCCAGACGACAGTAACAAACTAGATCGCTTGAACAGCTCTGCTCTCGTACGTGTAA
GGGTACAAAAAAGTTTTTGAAAACTACTTTACCAATTTGTGGAAAAATTACATTTTACAG
TGAAAACCCCTGCAGTGAAAGTGATAGCAACCACCACAACTGACAGAAACGAGCGTGCCA
TTCGGCAGGAAAGTAAAAACAACAACTAGACTGTGGCGCAGTGAAATCAGCGGACTTAAT
TGCATTAAAATCAATTCTTTTTTGTGTCACCTGAAAGTGCGATCGCAAATCACAAAAAAT
GAGTAAAATCTCGCGTGGTAGAGGCGGAAACTCTCGTTGCTACTCGTATTATGAAACGAG
ATTGATCCACGTTTCCCGCCACTATCACGAAATGGATGATGATGATTGCTGTGATATCTA
CAATCACAGCAACGCACCAAGATACAGCGTTAGAGAAAACAGCTCCTATAACTACACAAG
CAACATTAGGCAGCAGCTGCCGCCCATTCAAAAAGCAGCCATCCAGCCAAAAGCTGCCGC
TGCTTTGTCACCAATTGCCGTATCATCGAGCCAACAGCTTCAGTGGCCATTTTCCAAAGA
AAGTATCATAAAGGTGCCAGTGGGGGATTAAAAAAAAGTGCTCCTCGTTCAT

consensusID : consensus_1962#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [CAGNGAAGTGGATATGGCAGCGATAGCAGACGACATACAACTAATCGCTTGGACAGCTCTGCTTCGTACGTGTTTTTGAAAACTTCTTTACCAACCTGTGGAAAAATTACATTTTACAGTGAAACCCCCTGCAGTGAAAGTGATAGCAACCACCACAACTGACAGAAACGAGCGTGCCATTCGGCAGGAAAGTAAAAACAACAACTAGACTGCGGCGCAGTGAAATCAGCGGACTTAATTGCATTAAAATCAATTCTTTTTTGTGTCACCTAAAGTGCGATCGCAAATCACAAAAAAATGAGTAACATCTCGCGTGGTAGAGGCGGAAACTCTCGTTGCTACTCGTATTATGAAACGAGATTGATCCACGTTTC]

[+] EMBL AL932759             [CAGNGAAGTGGATATGGCAGCGATAGCAGACGACATACAACTAATCGCTTGGACAGCTCTGCTTCGTACGTGTTTTTGAAAACTTCTTTACCAACCTGTGGAAAAATTACATTTTACAGTGAAACCCCCTGCAGTGAAAGTGATAGCAACCACCACAACTGACAGAAACGAGCGTGCCATTCGGCAGGAAAGTAAAAACAACAACTAGACTGCGGCGCAGTGAAATCAGCGGACTTAATTGCATTAAAATCAATTCTTTTTTGTGTCACCTAAAGTGCGATCGCAAATCACAAAAAAATGAGTAACATCTCGCGTGGTAGAGGCGGAAACTCTCGTTGCTACTCGTATTATGAAACGAGATTGATCCACGTTTC]




>consensus_1962#1
CAGNGAAGTGGATATGGCAGCGATAGCAGACGACATACAACTAATCGCTTGGACAGCTCT
GCTTCGTACGTGTTTTTGAAAACTTCTTTACCAACCTGTGGAAAAATTACATTTTACAGT
GAAACCCCCTGCAGTGAAAGTGATAGCAACCACCACAACTGACAGAAACGAGCGTGCCAT
TCGGCAGGAAAGTAAAAACAACAACTAGACTGCGGCGCAGTGAAATCAGCGGACTTAATT
GCATTAAAATCAATTCTTTTTTGTGTCACCTAAAGTGCGATCGCAAATCACAAAAAAATG
AGTAACATCTCGCGTGGTAGAGGCGGAAACTCTCGTTGCTACTCGTATTATGAAACGAGA
TTGATCCACGTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1962#0      CCGTGCTGTTAGACGTATCGTTGAGTTCTTGCATGGAAACAGCAGTGGATTATTGGCAGC 60
consensus_1962#1      -------------------------------------CAGNGAAGTGGAT--ATGGCAGC 21
                                                            *  * *******   *******

consensus_1962#0      GTTAGCCAGACGACAGTAACAAACTAGATCGCTTGAACAGCTCTGCTCTCGTACGTGTAA 120
consensus_1962#1      GATAGC-AGACGACA--TACAA-CTA-ATCGCTTGGACAGCTCTGCT-TCGTACGTG--- 72
                      * **** ********   **** *** ******** *********** *********   

consensus_1962#0      GGGTACAAAAAAGTTTTTGAAAACTACTTTACCAATTTGTGGAAAAATTACATTTTACAG 180
consensus_1962#1      -------------TTTTTGAAAACTTCTTTACCAACCTGTGGAAAAATTACATTTTACAG 119
                                   ************ *********  ***********************

consensus_1962#0      TGAAAACCCCTGCAGTGAAAGTGATAGCAACCACCACAACTGACAGAAACGAGCGTGCCA 240
consensus_1962#1      TGAAACCCCCTGCAGTGAAAGTGATAGCAACCACCACAACTGACAGAAACGAGCGTGCCA 179
                      ***** ******************************************************

consensus_1962#0      TTCGGCAGGAAAGTAAAAACAACAACTAGACTGTGGCGCAGTGAAATCAGCGGACTTAAT 300
consensus_1962#1      TTCGGCAGGAAAGTAAAAACAACAACTAGACTGCGGCGCAGTGAAATCAGCGGACTTAAT 239
                      ********************************* **************************

consensus_1962#0      TGCATTAAAATCAATTCTTTTTTGTGTCACCTGAAAGTGCGATCGCAAATCACAAAAAA- 359
consensus_1962#1      TGCATTAAAATCAATTCTTTTTTGTGTCACCT-AAAGTGCGATCGCAAATCACAAAAAAA 298
                      ******************************** ************************** 

consensus_1962#0      TGAGTAAAATCTCGCGTGGTAGAGGCGGAAACTCTCGTTGCTACTCGTATTATGAAACGA 419
consensus_1962#1      TGAGTAACATCTCGCGTGGTAGAGGCGGAAACTCTCGTTGCTACTCGTATTATGAAACGA 358
                      ******* ****************************************************

consensus_1962#0      GATTGATCCACGTTTCCCGCCACTATCACGAAATGGATGATGATGATTGCTGTGATATCT 479
consensus_1962#1      GATTGATCCACGTTTC-------------------------------------------- 374
                      ****************                                            

consensus_1962#0      ACAATCACAGCAACGCACCAAGATACAGCGTTAGAGAAAACAGCTCCTATAACTACACAA 539
consensus_1962#1      ------------------------------------------------------------
                                                                                  

consensus_1962#0      GCAACATTAGGCAGCAGCTGCCGCCCATTCAAAAAGCAGCCATCCAGCCAAAAGCTGCCG 599
consensus_1962#1      ------------------------------------------------------------
                                                                                  

consensus_1962#0      CTGCTTTGTCACCAATTGCCGTATCATCGAGCCAACAGCTTCAGTGGCCATTTTCCAAAG 659
consensus_1962#1      ------------------------------------------------------------
                                                                                  

consensus_1962#0      AAAGTATCATAAAGGTGCCAGTGGGGGATTAAAAAAAAGTGCTCCTCGTTCAT 712
consensus_1962#1      -----------------------------------------------------