cluster # 198

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Anopheles gambiae
cluster # 198 cluster # 198 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_198#0 length = 695 sequences # 1

consensus_198#1 length = 369 sequences # 1

consensusID : consensus_198#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence

                              [TGGAGCAGGGCGATGGAATGCTTGCAACATAGCATTTGTTATGTACATTAGGTTGTTGGAAGCCCGCTCGAACGGTTTGCATGTCAAAAGCCTCATTGAGGTCTCATTTTACTGCTTAATTACGGAGGAGGATTTAGATTCTAGAGGTAGGAAAGCGGATCGAAGTAAAACAAATCGAAACGATGGGACAGTAAACCAAGCCACTGAAGAAAAACTCGTGTGAACAGCTCGAACCACCCTCGGCATCGGGACAGAGATAAGTGATTGATCAAGCGAACTCCTACCCGGAACGTTCGATGTCATAGTGACTGATTAAACGATGCACTTCGATGTGCGTTGTGCCTGCTCGGTAGCAAATGCGTCCATCAACATTTCGTTTATTCGTTGTATTCGTGGAAGTGATGATCGTGTTCCACTCGCGGAACCTGACCTCGCTTCCAACAACCAACAATATTCGACAGTACAGCATCAACGATAAGGTCAATCCACCCAAACCACAACCCGGCTATCCAACTGACGCCACGCCAGTCCCAGACCCAACGGTCGCTCCACGTGCTCAAACCACATGGTGCGGTACGGCTCCGGTGCCGTACGCAGGATGGTATTCGGTACCATTGACGGTGCCCGTGCCGCCTGCAGCAGCAGCAGCAGCGGCCACTGCAGCCGCCGCGGCCGCCGCTCGTTGCAGCGATGGA]

[+] EMBL CNS08LNI             [TGGAGCAGGGCGATGGAATGCTTGCAACATAGCATTTGTTATGTACATTAGGTTGTTGGAAGCCCGCTCGAACGGTTTGCATGTCAAAAGCCTCATTGAGGTCTCATTTTACTGCTTAATTACGGAGGAGGATTTAGATTCTAGAGGTAGGAAAGCGGATCGAAGTAAAACAAATCGAAACGATGGGACAGTAAACCAAGCCACTGAAGAAAAACTCGTGTGAACAGCTCGAACCACCCTCGGCATCGGGACAGAGATAAGTGATTGATCAAGCGAACTCCTACCCGGAACGTTCGATGTCATAGTGACTGATTAAACGATGCACTTCGATGTGCGTTGTGCCTGCTCGGTAGCAAATGCGTCCATCAACATTTCGTTTATTCGTTGTATTCGTGGAAGTGATGATCGTGTTCCACTCGCGGAACCTGACCTCGCTTCCAACAACCAACAATATTCGACAGTACAGCATCAACGATAAGGTCAATCCACCCAAACCACAACCCGGCTATCCAACTGACGCCACGCCAGTCCCAGACCCAACGGTCGCTCCACGTGCTCAAACCACATGGTGCGGTACGGCTCCGGTGCCGTACGCAGGATGGTATTCGGTACCATTGACGGTGCCCGTGCCGCCTGCAGCAGCAGCAGCAGCGGCCACTGCAGCCGCCGCGGCCGCCGCTCGTTGCAGCGATGGA]




>consensus_198#0
TGGAGCAGGGCGATGGAATGCTTGCAACATAGCATTTGTTATGTACATTAGGTTGTTGGA
AGCCCGCTCGAACGGTTTGCATGTCAAAAGCCTCATTGAGGTCTCATTTTACTGCTTAAT
TACGGAGGAGGATTTAGATTCTAGAGGTAGGAAAGCGGATCGAAGTAAAACAAATCGAAA
CGATGGGACAGTAAACCAAGCCACTGAAGAAAAACTCGTGTGAACAGCTCGAACCACCCT
CGGCATCGGGACAGAGATAAGTGATTGATCAAGCGAACTCCTACCCGGAACGTTCGATGT
CATAGTGACTGATTAAACGATGCACTTCGATGTGCGTTGTGCCTGCTCGGTAGCAAATGC
GTCCATCAACATTTCGTTTATTCGTTGTATTCGTGGAAGTGATGATCGTGTTCCACTCGC
GGAACCTGACCTCGCTTCCAACAACCAACAATATTCGACAGTACAGCATCAACGATAAGG
TCAATCCACCCAAACCACAACCCGGCTATCCAACTGACGCCACGCCAGTCCCAGACCCAA
CGGTCGCTCCACGTGCTCAAACCACATGGTGCGGTACGGCTCCGGTGCCGTACGCAGGAT
GGTATTCGGTACCATTGACGGTGCCCGTGCCGCCTGCAGCAGCAGCAGCAGCGGCCACTG
CAGCCGCCGCGGCCGCCGCTCGTTGCAGCGATGGA

consensusID : consensus_198#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [GGCAAGAATCGGCAGTNTTAGACTCGCTTCCAACAACCACACAATATTCGACAGTACAGCATCAACGATAAGGTCAATCCACCCAAACCACAACCCGGCTATCCAACTGACGCCACGCCAGTGCCAGACCCAACGGTCGCTCCACGTGCTCAAACCACATGGTGCGGTACGGCTCCGGATGCCGTACGCAGGATGGTATTCGGTACCATTGACGGTGCCCGTGCCAGCCTGCAGCAGCAGCAGCAGCAGGGCACTGCAGCCGCACGCAGGACGGCGCTCGTTGCAGCGATGGATGATGCATGTGGTGTGTCGCTGCCGNANTAGCGTCCAGATGNCACCGAGACNTGCCGGTGCCGTGGCCGATCCATG]

[+] EMBL BX467147             [GGCAAGAATCGGCAGTNTTAGACTCGCTTCCAACAACCACACAATATTCGACAGTACAGCATCAACGATAAGGTCAATCCACCCAAACCACAACCCGGCTATCCAACTGACGCCACGCCAGTGCCAGACCCAACGGTCGCTCCACGTGCTCAAACCACATGGTGCGGTACGGCTCCGGATGCCGTACGCAGGATGGTATTCGGTACCATTGACGGTGCCCGTGCCAGCCTGCAGCAGCAGCAGCAGCAGGGCACTGCAGCCGCACGCAGGACGGCGCTCGTTGCAGCGATGGATGATGCATGTGGTGTGTCGCTGCCGNANTAGCGTCCAGATGNCACCGAGACNTGCCGGTGCCGTGGCCGATCCATG]




>consensus_198#1
GGCAAGAATCGGCAGTNTTAGACTCGCTTCCAACAACCACACAATATTCGACAGTACAGC
ATCAACGATAAGGTCAATCCACCCAAACCACAACCCGGCTATCCAACTGACGCCACGCCA
GTGCCAGACCCAACGGTCGCTCCACGTGCTCAAACCACATGGTGCGGTACGGCTCCGGAT
GCCGTACGCAGGATGGTATTCGGTACCATTGACGGTGCCCGTGCCAGCCTGCAGCAGCAG
CAGCAGCAGGGCACTGCAGCCGCACGCAGGACGGCGCTCGTTGCAGCGATGGATGATGCA
TGTGGTGTGTCGCTGCCGNANTAGCGTCCAGATGNCACCGAGACNTGCCGGTGCCGTGGC
CGATCCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_198#0      TGGAGCAGGGCGATGGAATGCTTGCAACATAGCATTTGTTATGTACATTAGGTTGTTGGA 60
consensus_198#1      ------------------------------------------------------------
                                                                                 

consensus_198#0      AGCCCGCTCGAACGGTTTGCATGTCAAAAGCCTCATTGAGGTCTCATTTTACTGCTTAAT 120
consensus_198#1      ------------------------------------------------------------
                                                                                 

consensus_198#0      TACGGAGGAGGATTTAGATTCTAGAGGTAGGAAAGCGGATCGAAGTAAAACAAATCGAAA 180
consensus_198#1      ------------------------------------------------------------
                                                                                 

consensus_198#0      CGATGGGACAGTAAACCAAGCCACTGAAGAAAAACTCGTGTGAACAGCTCGAACCACCCT 240
consensus_198#1      ------------------------------------------------------------
                                                                                 

consensus_198#0      CGGCATCGGGACAGAGATAAGTGATTGATCAAGCGAACTCCTACCCGGAACGTTCGATGT 300
consensus_198#1      ------------------------------------------------------------
                                                                                 

consensus_198#0      CATAGTGACTGATTAAACGATGCACTTCGATGTGCGTTGTGCCTGCTCGGTAGCAAATGC 360
consensus_198#1      ------------------------------------------------------------
                                                                                 

consensus_198#0      GTCCATCAACATTTCGTTTATTCGTTGTATTCGTGGAAGTGATGATCGTGTTCCACTCGC 420
consensus_198#1      ------------------------------------------------GGCAAGAATCGG 12
                                                                      *    * *** 

consensus_198#0      GGAACCTGACCTCGCTTCCAACAACCA-ACAATATTCGACAGTACAGCATCAACGATAAG 479
consensus_198#1      CAGTNTTAGACTCGCTTCCAACAACCACACAATATTCGACAGTACAGCATCAACGATAAG 72
                           *   ***************** ********************************

consensus_198#0      GTCAATCCACCCAAACCACAACCCGGCTATCCAACTGACGCCACGCCAGTCCCAGACCCA 539
consensus_198#1      GTCAATCCACCCAAACCACAACCCGGCTATCCAACTGACGCCACGCCAGTGCCAGACCCA 132
                     ************************************************** *********

consensus_198#0      ACGGTCGCTCCACGTGCTCAAACCACATGGTGCGGTACGGCTCCGG-TGCCGTACGCAGG 598
consensus_198#1      ACGGTCGCTCCACGTGCTCAAACCACATGGTGCGGTACGGCTCCGGATGCCGTACGCAGG 192
                     ********************************************** *************

consensus_198#0      ATGGTATTCGGTACCATTGACGGTGCCCGTGCC-GCCTGCAGCAGCAGCAGCAGC-GGCC 656
consensus_198#1      ATGGTATTCGGTACCATTGACGGTGCCCGTGCCAGCCTGCAGCAGCAGCAGCAGCAGGGC 252
                     ********************************* ********************* ** *

consensus_198#0      ACTGCAGCCGC-CGC-GGCCGCCGCTCGTTGCAGCGATGGA------------------- 695
consensus_198#1      ACTGCAGCCGCACGCAGGACGGCGCTCGTTGCAGCGATGGATGATGCATGTGGTGTGTCG 312
                     *********** *** ** ** *******************                   

consensus_198#0      ---------------------------------------------------------
consensus_198#1      CTGCCGNANTAGCGTCCAGATGNCACCGAGACNTGCCGGTGCCGTGGCCGATCCATG 369