These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [CCGGGACCTTCGGCCAGAGTCGCCCAATCGTCCTGTGTCACCGCGTAGCATATCCTTTTTTGCGGTGCCGTGAAATGATAAGTTTTGAAATAGCACGAAAACCGCATTCCCCATTGCCAGTGATAAAGTAAACCATGGTTGGCCTAGCAACGGACGATATGGTCGTGCGGACGCAACAGCACCAGCAGCCGTCGCCAAACCGACATTTAGGCTGTGGCCAGAGTGAGTTTCCCGTGTTTATCCCGCCGAGAAAACGGCAAACAGGAAAGAAGACAAACCATGGCAATCATATCGATCACATCGTGAACATACAGGGTACCCGTAAAGAGTGGGATCTAACACCGGAACGAGAAGACTGTCGAAGAAACAAGCGCTGGAACAGTGAGGAGATCATCGAAATCAGCTCCACCGGCAAAGGGGGCCCGATCGCGAACGGCACCAACGAGGACGAGGACGATCTGAACGAGCTGCAGCACTTTCATCCGCTCAAGGACAGCTCCACCGTGACGCCGAGCAGCATCTCGGAGAGCAGCCTCGACCGGAAGTCGAGCAAGTCGGCCGAACTGCCTACCGGCGGCAGTGGCAAGCGCTCCAAAAAGCGGGTCAACATTCGCACCGATCTGGACGAAATAGGACGGCGTCGGTCACCGTCGGCCATCTGCAACTACGAGGATCTGGAGTCGGGT] [+] EMBL BM602720 [CCGGGACCTTCGGCCAGAGTCGCCCAATCGTCCTGTGTCACCGCGTAGCATATCCTTTTTTGCGGTGCCGTGAAATGATAAGTTTTGAAATAGCACGAAAACCGCATTCCCCATTGCCAGTGATAAAGTAAACCATGGTTGGCCTAGCAACGGACGATATGGTCGTGCGGACGCAACAGCACCAGCAGCCGTCGCCAAACCGACATTTAGGCTGTGGCCAGAGTGAGTTTCCCGTGTTTATCCCGCCGAGAAAACGGCAAACAGGAAAGAAGACAAACCATGGCAATCATATCGATCACATCGTGAACATACAGGGTACCCGTAAAGAGTGGGATCTAACACCGGAACGAGAAGACTGTCGAAGAAACAAGCGCTGGAACAGTGAGGAGATCATCGAAATCAGCTCCACCGGCAAAGGGGGCCCGATCGCGAACGGCACCAACGAGGACGAGGACGATCTGAACGAGCTGCAGCACTTTCATCCGCTCAAGGACAGCTCCACCGTGACGCCGAGCAGCATCTCGGAGAGCAGCCTCGACCGGAAGTCGAGCAAGTCGGCCGAACTGCCTACCGGCGGCAGTGGCAAGCGCTCCAAAAAGCGGGTCAACATTCGCACCGATCTGGACGAAATAGGACGGCGTCGGTCACCGTCGGCCATCTGCAACTACGAGGATCTGGAGTCGGGT] consensusID : consensus_1981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [CCGCACATACAACAGTAAATTGTCCTTCCTTGCAGGGTACCCGTAAAGAGTGGGATCTAACACCGGAACGAGAAGACTGTCGAAGAAACAAGCGCTGGAACAGTGAGGAGATCATCGAAATCAGCTCCACCGGCAAAGGGGGCCCGATCGCGAACGGCACCAACGAGGACGAGGACGATCTGAACGAGCTGCAGCACTTTCATCCGCTCAAGGACAGCTCCACCGTGACGCCGAGCAGCATCTCGGAGAGCAGCCTCGACCGGAAGTCGAGCAAGTCGGCCGAACTGCTTACCGGCGGCAGTGGCAAGCGCTCCAAAAAGCGGGTCAACATTCGCACCGATCTGGACGAAATAGGACGGCGTCGGTCACCGTCGGCCATCTGCAACTACGAGGATCTGGAGTGAGACGAGCGTACTGAACGCCGAGCTCGACCAGCACAGCCTGGAGCGGTACAACACGAACCGCTCGTACGCTTCCTCCACCGATAACTATCTGACGATGACGGGCACGATCAAGCGTGGCCGCAAGAAGGGGCAATCGATCGATGTGCAGCTAAACATTTCGCGCGAAGAGCTGGAGCAAATCAGCAAACAGGCGCTGGCCGTAC] [+] EMBL BM602611 [CCGCACATACAACAGTAAATTGTCCTTCCTTGCAGGGTACCCGTAAAGAGTGGGATCTAACACCGGAACGAGAAGACTGTCGAAGAAACAAGCGCTGGAACAGTGAGGAGATCATCGAAATCAGCTCCACCGGCAAAGGGGGCCCGATCGCGAACGGCACCAACGAGGACGAGGACGATCTGAACGAGCTGCAGCACTTTCATCCGCTCAAGGACAGCTCCACCGTGACGCCGAGCAGCATCTCGGAGAGCAGCCTCGACCGGAAGTCGAGCAAGTCGGCCGAACTGCTTACCGGCGGCAGTGGCAAGCGCTCCAAAAAGCGGGTCAACATTCGCACCGATCTGGACGAAATAGGACGGCGTCGGTCACCGTCGGCCATCTGCAACTACGAGGATCTGGAGTGAGACGAGCGTACTGAACGCCGAGCTCGACCAGCACAGCCTGGAGCGGTACAACACGAACCGCTCGTACGCTTCCTCCACCGATAACTATCTGACGATGACGGGCACGATCAAGCGTGGCCGCAAGAAGGGGCAATCGATCGATGTGCAGCTAAACATTTCGCGCGAAGAGCTGGAGCAAATCAGCAAACAGGCGCTGGCCGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1981#0 CCGGGACCTTCGGCCAGAGTCGCCCAATCGTCCTGTGTCACCGCGTAGCATATCCTTTTT 60 consensus_1981#1 ------------------------------------------------------------ consensus_1981#0 TGCGGTGCCGTGAAATGATAAGTTTTGAAATAGCACGAAAACCGCATTCCCCATTGCCAG 120 consensus_1981#1 ------------------------------------------------------------ consensus_1981#0 TGATAAAGTAAACCATGGTTGGCCTAGCAACGGACGATATGGTCGTGCGGACGCAACAGC 180 consensus_1981#1 ------------------------------------------------------------ consensus_1981#0 ACCAGCAGCCGTCGCCAAACCGACATTTAGGCTGTGGCCAGAGTGAGTTTCCCGTGTTTA 240 consensus_1981#1 ------------------------------------------------------------ consensus_1981#0 TCCCGCCGAGAAAACGGCAAACAGGAAAGAAGACAAACCATGGCAATCATATCGATCACA 300 consensus_1981#1 ----------------------------------------CCGCACATACAACAGT-AAA 19 *** * * * * * * consensus_1981#0 TCGTGAA--CATACAGGGTACCCGTAAAGAGTGGGATCTAACACCGGAACGAGAAGACTG 358 consensus_1981#1 TTGTCCTTCCTTGCAGGGTACCCGTAAAGAGTGGGATCTAACACCGGAACGAGAAGACTG 79 * ** * * *********************************************** consensus_1981#0 TCGAAGAAACAAGCGCTGGAACAGTGAGGAGATCATCGAAATCAGCTCCACCGGCAAAGG 418 consensus_1981#1 TCGAAGAAACAAGCGCTGGAACAGTGAGGAGATCATCGAAATCAGCTCCACCGGCAAAGG 139 ************************************************************ consensus_1981#0 GGGCCCGATCGCGAACGGCACCAACGAGGACGAGGACGATCTGAACGAGCTGCAGCACTT 478 consensus_1981#1 GGGCCCGATCGCGAACGGCACCAACGAGGACGAGGACGATCTGAACGAGCTGCAGCACTT 199 ************************************************************ consensus_1981#0 TCATCCGCTCAAGGACAGCTCCACCGTGACGCCGAGCAGCATCTCGGAGAGCAGCCTCGA 538 consensus_1981#1 TCATCCGCTCAAGGACAGCTCCACCGTGACGCCGAGCAGCATCTCGGAGAGCAGCCTCGA 259 ************************************************************ consensus_1981#0 CCGGAAGTCGAGCAAGTCGGCCGAACTGCCTACCGGCGGCAGTGGCAAGCGCTCCAAAAA 598 consensus_1981#1 CCGGAAGTCGAGCAAGTCGGCCGAACTGCTTACCGGCGGCAGTGGCAAGCGCTCCAAAAA 319 ***************************** ****************************** consensus_1981#0 GCGGGTCAACATTCGCACCGATCTGGACGAAATAGGACGGCGTCGGTCACCGTCGGCCAT 658 consensus_1981#1 GCGGGTCAACATTCGCACCGATCTGGACGAAATAGGACGGCGTCGGTCACCGTCGGCCAT 379 ************************************************************ consensus_1981#0 CTGCAACTACGAGGATCTGGAGTCGGGT-------------------------------- 686 consensus_1981#1 CTGCAACTACGAGGATCTGGAGTGAGACGAGCGTACTGAACGCCGAGCTCGACCAGCACA 439 *********************** * consensus_1981#0 ------------------------------------------------------------ consensus_1981#1 GCCTGGAGCGGTACAACACGAACCGCTCGTACGCTTCCTCCACCGATAACTATCTGACGA 499 consensus_1981#0 ------------------------------------------------------------ consensus_1981#1 TGACGGGCACGATCAAGCGTGGCCGCAAGAAGGGGCAATCGATCGATGTGCAGCTAAACA 559 consensus_1981#0 ------------------------------------------------ consensus_1981#1 TTTCGCGCGAAGAGCTGGAGCAAATCAGCAAACAGGCGCTGGCCGTAC 607 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||