cluster # 1982

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Anopheles gambiae
cluster # 1982 cluster # 1982 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1982#0 length = 668 sequences # 1

consensus_1982#1 length = 453 sequences # 1

consensusID : consensus_1982#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [CCGGTTCGAACTGAGCAGCCGTGTGTTCGCTTTCCGTGTCGTGCGAGAGGCAACAGTGTGTGATCGTGCCTACGTACTAGGGATTCAAACCAACTCCTTTCAACCGTCTAGCGCTCCAGCCTCCAATCAACTGCTCGCTGTGTGCTAGATAGACGAGACGAATTGAAACATCTCAGCATGAGTTGTGCTAGTGTTTTGACCAGCAAAGACCTGCCGGACATTGAGAGCCTGCTCGCTCTCAATCCGCGCGTGAAGCAGTCCTGCTCGCTGGTACCGACGACCGTGACGAAGAAGGTGAAGAAACACTGGAAGCGCAATGAAGACCGCTCCTGCACGTCATGCACCCCGCTCACGAACGACTTTTCCGACATCAAGCATACGACGCTGTCCGAGCGGGCAGCGCTGAAAGAGGCAGCCCGCTGCCTCAAGTGTGCCGATGCACCGTGCCAGAAGTCCTGCCCGACGCAGCTGGACATCAAGAGCTTCATCACGAGCATCGCGAACCGGAACTACTACGGTGCGGCCAAGGCCATCTTCTCGGACAATCCGCTCGGGCTGACGTGCGGCATGGTCTGTCCGACCAGCGATCTGTGTGTGGGCGGCTGCAATCTAGCCGCAGTCGAAGAGGGCCCCATCAACATCGGCGGTCTGCAGCAGTTCGCGACGGA]

[+] EMBL BM576472             [CCGGTTCGAACTGAGCAGCCGTGTGTTCGCTTTCCGTGTCGTGCGAGAGGCAACAGTGTGTGATCGTGCCTACGTACTAGGGATTCAAACCAACTCCTTTCAACCGTCTAGCGCTCCAGCCTCCAATCAACTGCTCGCTGTGTGCTAGATAGACGAGACGAATTGAAACATCTCAGCATGAGTTGTGCTAGTGTTTTGACCAGCAAAGACCTGCCGGACATTGAGAGCCTGCTCGCTCTCAATCCGCGCGTGAAGCAGTCCTGCTCGCTGGTACCGACGACCGTGACGAAGAAGGTGAAGAAACACTGGAAGCGCAATGAAGACCGCTCCTGCACGTCATGCACCCCGCTCACGAACGACTTTTCCGACATCAAGCATACGACGCTGTCCGAGCGGGCAGCGCTGAAAGAGGCAGCCCGCTGCCTCAAGTGTGCCGATGCACCGTGCCAGAAGTCCTGCCCGACGCAGCTGGACATCAAGAGCTTCATCACGAGCATCGCGAACCGGAACTACTACGGTGCGGCCAAGGCCATCTTCTCGGACAATCCGCTCGGGCTGACGTGCGGCATGGTCTGTCCGACCAGCGATCTGTGTGTGGGCGGCTGCAATCTAGCCGCAGTCGAAGAGGGCCCCATCAACATCGGCGGTCTGCAGCAGTTCGCGACGGA]




>consensus_1982#0
CCGGTTCGAACTGAGCAGCCGTGTGTTCGCTTTCCGTGTCGTGCGAGAGGCAACAGTGTG
TGATCGTGCCTACGTACTAGGGATTCAAACCAACTCCTTTCAACCGTCTAGCGCTCCAGC
CTCCAATCAACTGCTCGCTGTGTGCTAGATAGACGAGACGAATTGAAACATCTCAGCATG
AGTTGTGCTAGTGTTTTGACCAGCAAAGACCTGCCGGACATTGAGAGCCTGCTCGCTCTC
AATCCGCGCGTGAAGCAGTCCTGCTCGCTGGTACCGACGACCGTGACGAAGAAGGTGAAG
AAACACTGGAAGCGCAATGAAGACCGCTCCTGCACGTCATGCACCCCGCTCACGAACGAC
TTTTCCGACATCAAGCATACGACGCTGTCCGAGCGGGCAGCGCTGAAAGAGGCAGCCCGC
TGCCTCAAGTGTGCCGATGCACCGTGCCAGAAGTCCTGCCCGACGCAGCTGGACATCAAG
AGCTTCATCACGAGCATCGCGAACCGGAACTACTACGGTGCGGCCAAGGCCATCTTCTCG
GACAATCCGCTCGGGCTGACGTGCGGCATGGTCTGTCCGACCAGCGATCTGTGTGTGGGC
GGCTGCAATCTAGCCGCAGTCGAAGAGGGCCCCATCAACATCGGCGGTCTGCAGCAGTTC
GCGACGGA

consensusID : consensus_1982#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [CCGATTCTATTGCGCCTCTACCGCTACGCTGACTGCTGAACACACCTTTGCCAGGGATTCAAACCAACTCCTTTCAACCGTCTAGCGCTCCAGCCTCCAATCAACTGCTCGCTGTGTGCTAGATAGACGAGACGAATTGAAACATCTCAGCATGAGTTGTGCTAGTGTTTTGACCAGCAAAGACCTGCCGGACATTGAGAGCCTGCTCGCTCTCAATCCGCGCGTGAAGCAGTCCTGCTCGCTGGTACCGACGACCGTGACGAAGAAGGTGAAGAAACACTGGAAGCGCAATGAAGACCGCTCCTGCACGTCATGCACCCCGCTCACGAACGACTTTTCCGACATCAAGCATACGACGCTGTCCGAGCGGGCAGCGCTGAAAGAGGCAGCCCGCTGCCTCAAGTGTGCCGATGCACCGTGCCAGAAGTCCTGCCCGACGCAGCTGGACATCAA]

[+] EMBL BM622962             [CCGATTCTATTGCGCCTCTACCGCTACGCTGACTGCTGAACACACCTTTGCCAGGGATTCAAACCAACTCCTTTCAACCGTCTAGCGCTCCAGCCTCCAATCAACTGCTCGCTGTGTGCTAGATAGACGAGACGAATTGAAACATCTCAGCATGAGTTGTGCTAGTGTTTTGACCAGCAAAGACCTGCCGGACATTGAGAGCCTGCTCGCTCTCAATCCGCGCGTGAAGCAGTCCTGCTCGCTGGTACCGACGACCGTGACGAAGAAGGTGAAGAAACACTGGAAGCGCAATGAAGACCGCTCCTGCACGTCATGCACCCCGCTCACGAACGACTTTTCCGACATCAAGCATACGACGCTGTCCGAGCGGGCAGCGCTGAAAGAGGCAGCCCGCTGCCTCAAGTGTGCCGATGCACCGTGCCAGAAGTCCTGCCCGACGCAGCTGGACATCAA]




>consensus_1982#1
CCGATTCTATTGCGCCTCTACCGCTACGCTGACTGCTGAACACACCTTTGCCAGGGATTC
AAACCAACTCCTTTCAACCGTCTAGCGCTCCAGCCTCCAATCAACTGCTCGCTGTGTGCT
AGATAGACGAGACGAATTGAAACATCTCAGCATGAGTTGTGCTAGTGTTTTGACCAGCAA
AGACCTGCCGGACATTGAGAGCCTGCTCGCTCTCAATCCGCGCGTGAAGCAGTCCTGCTC
GCTGGTACCGACGACCGTGACGAAGAAGGTGAAGAAACACTGGAAGCGCAATGAAGACCG
CTCCTGCACGTCATGCACCCCGCTCACGAACGACTTTTCCGACATCAAGCATACGACGCT
GTCCGAGCGGGCAGCGCTGAAAGAGGCAGCCCGCTGCCTCAAGTGTGCCGATGCACCGTG
CCAGAAGTCCTGCCCGACGCAGCTGGACATCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1982#0      CCGGTTCGAACTGAGCAGCCGTGTGTTCGCTTTCCGTGTCGTGCGAGAGGCAACAGTGTG 60
consensus_1982#1      ----------------------CCGATTCTATTGCGCCTCTACCGCTACGCTG-ACTGC- 36
                                              * *    ** **  **   **  * **   * **  

consensus_1982#0      TGATCGTGCCTACGTACTAGGGATTCAAACCAACTCCTTTCAACCGTCTAGCGCTCCAGC 120
consensus_1982#1      TGAACACACCTTTG--CCAGGGATTCAAACCAACTCCTTTCAACCGTCTAGCGCTCCAGC 94
                      *** *   ***  *  * ******************************************

consensus_1982#0      CTCCAATCAACTGCTCGCTGTGTGCTAGATAGACGAGACGAATTGAAACATCTCAGCATG 180
consensus_1982#1      CTCCAATCAACTGCTCGCTGTGTGCTAGATAGACGAGACGAATTGAAACATCTCAGCATG 154
                      ************************************************************

consensus_1982#0      AGTTGTGCTAGTGTTTTGACCAGCAAAGACCTGCCGGACATTGAGAGCCTGCTCGCTCTC 240
consensus_1982#1      AGTTGTGCTAGTGTTTTGACCAGCAAAGACCTGCCGGACATTGAGAGCCTGCTCGCTCTC 214
                      ************************************************************

consensus_1982#0      AATCCGCGCGTGAAGCAGTCCTGCTCGCTGGTACCGACGACCGTGACGAAGAAGGTGAAG 300
consensus_1982#1      AATCCGCGCGTGAAGCAGTCCTGCTCGCTGGTACCGACGACCGTGACGAAGAAGGTGAAG 274
                      ************************************************************

consensus_1982#0      AAACACTGGAAGCGCAATGAAGACCGCTCCTGCACGTCATGCACCCCGCTCACGAACGAC 360
consensus_1982#1      AAACACTGGAAGCGCAATGAAGACCGCTCCTGCACGTCATGCACCCCGCTCACGAACGAC 334
                      ************************************************************

consensus_1982#0      TTTTCCGACATCAAGCATACGACGCTGTCCGAGCGGGCAGCGCTGAAAGAGGCAGCCCGC 420
consensus_1982#1      TTTTCCGACATCAAGCATACGACGCTGTCCGAGCGGGCAGCGCTGAAAGAGGCAGCCCGC 394
                      ************************************************************

consensus_1982#0      TGCCTCAAGTGTGCCGATGCACCGTGCCAGAAGTCCTGCCCGACGCAGCTGGACATCAAG 480
consensus_1982#1      TGCCTCAAGTGTGCCGATGCACCGTGCCAGAAGTCCTGCCCGACGCAGCTGGACATCAA- 453
                      *********************************************************** 

consensus_1982#0      AGCTTCATCACGAGCATCGCGAACCGGAACTACTACGGTGCGGCCAAGGCCATCTTCTCG 540
consensus_1982#1      ------------------------------------------------------------
                                                                                  

consensus_1982#0      GACAATCCGCTCGGGCTGACGTGCGGCATGGTCTGTCCGACCAGCGATCTGTGTGTGGGC 600
consensus_1982#1      ------------------------------------------------------------
                                                                                  

consensus_1982#0      GGCTGCAATCTAGCCGCAGTCGAAGAGGGCCCCATCAACATCGGCGGTCTGCAGCAGTTC 660
consensus_1982#1      ------------------------------------------------------------
                                                                                  

consensus_1982#0      GCGACGGA 668
consensus_1982#1      --------