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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1218 fasta sequence
[GAATCCCGAGGTTNAGCCCGGCTGAGCCCTGCAGCACATATCGGTGTAGCAGCAATCCCGCCGCAGCTCGAGCCCCGCATCACCAACAGCAACGCGCAAGTTGCTTCGGCTGCCGCACCTCAGCACATCATCGACGAGGTCGCAATCCCTGCCAAGGCTCTGAGTCCTGCCTCATCATCGGCAACCTGCAGGTTGCTTTGACTGCAGCACGGCAGCATGTCATCTGGCGAGGTCGCATTCCCTGCCGCGGCTCGAGCCCCGCATCAACAATGGCGACACTGTAAGTCTGCCTCGGCTGCAACGCAGCAGCCTCGCATCATAGGCGACGACACATTCTTGCTCACCTTGCAGCAAACCAGCACGTCAGCCAGAGACGCCATCGCTGTGGCCGGCCATTTGCTGTCGCCGGTCATGGCCTGCCTGGTGCAAGGTTTCATTGCGGACCAACCTCACTCCCTGGCACGGCGTAGACAGCGACTGCTACAACCGAGTGACAGCGAACTGCGGCATCATCGCCGCCGCCCGGGACAACGGTGCACCATAGCAGACGCTCCCGAGGACAGCGAACGCGGNATCATCGCCGCGCCCGGGGACAACAGGTCATCATCAACAGTCGCAACTCGCGGAACGCGACGCGGCATCATCGCAAGACCGCCCCGGGAACATTGAGCGCAGCAGCATCACGATTNCCCACTAAGTACCATCGGTCGAACGGGTGTCACACAGCTGTATACGTGTGGAATACACCGNGGTCGGTTCGACCTTCGGTATTAAACGGGGCAGACTGTCATGTGGATANNAACGTTGCCGAAGCCCNNGCGATTGCCCGAACAATTACCCTCGCAGGNNGTNAACNCTCCAGACATTCCACTGCGCCCAANCGCACAAATACGCGCACTAACGAGATGCGGGCANAACAGTTTTGACNAAGGGNACCCAAAGGAGNAGTGTNTAAAAGGGCAANGGTCACACAAAGGACCCCGCNNAGTTCACAGCGGCGATTTGTCGGGCACCACACACAAAAATTGGCGTGCATCATTCAGACTATAGNAGTCTAACAACCAAAACAACAAAGGATCCCNCANTNGTTCTCGTGTCTCTCTNNCCNNNNTNTNTCCNNCCTCACGACCCGACNACGAANAACTNCNNTTCGACGTAGCNCTANCANACGNNANNAGCCATCGACAACCGANTAGANTCAAAGACAGTGCATACCGA]
[+] EMBL AL695078 [GAATCCCGAGGTTNAGCCCGGCTGAGCCCTGCAGCACATATCGGTGTAGCAGCAATCCCGCCGCAGCTCGAGCCCCGCATCACCAACAGCAACGCGCAAGTTGCTTCGGCTGCCGCACCTCAGCACATCATCGACGAGGTCGCAATCCCTGCCAAGGCTCTGAGTCCTGCCTCATCATCGGCAACCTGCAGGTTGCTTTGACTGCAGCACGGCAGCATGTCATCTGGCGAGGTCGCATTCCCTGCCGCGGCTCGAGCCCCGCATCAACAATGGCGACACTGTAAGTCTGCCTCGGCTGCAACGCAGCAGCCTCGCATCATAGGCGACGACACATTCTTGCTCACCTTGCAGCAAACCAGCACGTCAGCCAGAGACGCCATCGCTGTGGCCGGCCATTTGCTGTCGCCGGTCATGGCCTGCCTGGTGCAAGGTTTCATTGCGGACCAACCTCACTCCCTGGCACGGCGTAGACAGCGACTGCTACAACCGAGTGACAGCGAACTGCGGCATCATCGCCGCCGCCCGGGACAACGGTGCACCATAGCAGACGCTCCCGAGGACAGCGAACGCGGNATCATCGCCGCGCCCGGGGACAACAGGTCATCATCAACAGTCGCAACTCGCGGAACGCGACGCGGCATCATCGCAAGACCGCCCCGGGAACATTGAGCGCAGCAGCATCACGATTNCCCACTAAGTACCATCGGTCGAACGGGTGTCACACAGCTGTATACGTGTGGAATACACCGNGGTCGGTTCGACCTTCGGTATTAAACGGGGCAGACTGTCATGTGGATANNAACGTTGCCGAAGCCCNNGCGATTGCCCGAACAATTACCCTCGCAGGNNGTNAACNCTCCAGACATTCCACTGCGCCCAANCGCACAAATACGCGCACTAACGAGATGCGGGCANAACAGTTTTGACNAAGGGNACCCAAAGGAGNAGTGTNTAAAAGGGCAANGGTCACACAAAGGACCCCGCNNAGTTCACAGCGGCGATTTGTCGGGCACCACACACAAAAATTGGCGTGCATCATTCAGACTATAGNAGTCTAACAACCAAAACAACAAAGGATCCCNCANTNGTTCTCGTGTCTCTCTNNCCNNNNTNTNTCCNNCCTCACGACCCGACNACGAANAACTNCNNTTCGACGTAGCNCTANCANACGNNANNAGCCATCGACAACCGANTAGANTCAAAGACAGTGCATACCGA]
consensusID : consensus_1991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[CCGAGAGGAGTGTGTTACAGGCTACCGGTCGAGCAGGGCTCCCGGTAGGGCTCACGGTGCGGCTCGTGCGTGCGGCCCATTACAAGTTTTAATTTGTTGTGTTTTGTATTATTTAATTCGTTTAATAAATGTGTAAATGTGCAAAACATAAAAGTGGCGACGAGGATGGGATCCTCTTGCGCAAGGAGGATCCTACAGAACCCGCGGCAGCCATCGCGTTTCGTCTGGCCTTTCTGCAGCGTCAGTGCAGCGGCCATCGCGATGGCACGGTTCCCTGTGCCTTTGGGATACCGCGGAACATCGGGCCGCCGCCACCGCAGACACCGTGGCCCCGGCTGCTGTCCCATCACTGGCGACCGCTGCATTGGGCAGCCGGCTACACACCACCCACTTATTAAGGGCGACTTCACATTCCGCCCCGGCTCGAGCCCTGCAGCACGTCATCGGCGAAGCAGCTATCCCGCCGCGGCTCGAGCCCCGCATCACCAACGGCGACACGTAAGTCGCCTCGGCTGCAACGCAGCAGCCTCGCATCATAGGCGACGACACATTCCGCCTCACCTGCAG]
[+] EMBL BM606935 [CCGAGAGGAGTGTGTTACAGGCTACCGGTCGAGCAGGGCTCCCGGTAGGGCTCACGGTGCGGCTCGTGCGTGCGGCCCATTACAAGTTTTAATTTGTTGTGTTTTGTATTATTTAATTCGTTTAATAAATGTGTAAATGTGCAAAACATAAAAGTGGCGACGAGGATGGGATCCTCTTGCGCAAGGAGGATCCTACAGAACCCGCGGCAGCCATCGCGTTTCGTCTGGCCTTTCTGCAGCGTCAGTGCAGCGGCCATCGCGATGGCACGGTTCCCTGTGCCTTTGGGATACCGCGGAACATCGGGCCGCCGCCACCGCAGACACCGTGGCCCCGGCTGCTGTCCCATCACTGGCGACCGCTGCATTGGGCAGCCGGCTACACACCACCCACTTATTAAGGGCGACTTCACATTCCGCCCCGGCTCGAGCCCTGCAGCACGTCATCGGCGAAGCAGCTATCCCGCCGCGGCTCGAGCCCCGCATCACCAACGGCGACACGTAAGTCGCCTCGGCTGCAACGCAGCAGCCTCGCATCATAGGCGACGACACATTCCGCCTCACCTGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1991#0 GAATCCCGAGGTTNAGCCCGGCTGAGCCCTGCAGCACATATCGGTGTAGCAGCAATCCCG 60
consensus_1991#1 ------------------------------------------------------------
consensus_1991#0 CCGCAGCTCGAGCCCCGCATCACCAACAGCAACGCGCAAGTTGCTTCGGCTGCCGCACCT 120
consensus_1991#1 ------------------------------------------------------------
consensus_1991#0 CAGCACATCATCGACGAGGTCGCAATCCCTGCCAAGGCTCTGAGTCCTGCCTCATCATCG 180
consensus_1991#1 ------------------------------------------------------------
consensus_1991#0 GCAACCTGCAGGTTGCTTTGACTGCAGCACGGCAGCATGTCATCTGGCGAGGTCGCATTC 240
consensus_1991#1 ------------------------------------------------------------
consensus_1991#0 CCTGCCGCGGCTCGAGCCCCGCATCAACAATGGCGACACTGTAAGTCTGCCTCGGCTGCA 300
consensus_1991#1 ------------------------------------------------------------
consensus_1991#0 ACGCAGCAGCCTCGCATCATAGGCGACGACACATTCTTGCTCACCTTGCAGCAAACCAGC 360
consensus_1991#1 ------------------------------------------------------------
consensus_1991#0 ACGTCAGCCAGAGACGCCATCGCTGTGGCCGGCCATTTGCTGTCGCCGGTCATGGCCTGC 420
consensus_1991#1 ------------------------------------------------------------
consensus_1991#0 CTGGTGCAAGGTTTCATTGCGGACCAACCTCACTCCCTGGCACGGCGTAGACAGCGACTG 480
consensus_1991#1 ------------------------------------------------------------
consensus_1991#0 CTACAACCGAGTGACAGCGAACTGCGGCATCATCGCCGCCGCCCGGGACAACGGTGCACC 540
consensus_1991#1 ------------------------------------------------------------
consensus_1991#0 ATAGCAGACGCTCCCGAGGACAGCGAACGCGGNATCATCGCCGCGCCCGGGGACAACAGG 600
consensus_1991#1 ----------------------------------------------CCGAGAGGAGTGTG 14
*** * * *
consensus_1991#0 TCATCATCAACAGTCGCAACTCGCGGAACGCGACGCGGCATCATCGCAAGACCGCCCCGG 660
consensus_1991#1 TTACAGGCTACCG--GTCGAGCAGGGCTCCCGGTAGGGC----TCACGGTGCGGCTC--- 65
* * * ** * * * ** * ** *** ** * * ** *
consensus_1991#0 GAACATTGAGCGCAGCAGCATCACGATTNCCCACTAAGTACCATCGGTCGAACGGGTGTC 720
consensus_1991#1 GTGCGTGCGGCCCATTACAAGTTTTAATTTGTTGTGTTTTGTATTATTTAATT---CGTT 122
* * * ** ** * * * * * * ** * * **
consensus_1991#0 ACACAGCTGTATACGTGTGGAATACACCGNGGTCGGTTCGACCTTCGGTATTAAACGGGG 780
consensus_1991#1 TAATAAATGTGTAAATGTGCAAAACATAAAAGTGGCGACGAGGAT-GGGATCCTCTTGCG 181
* * *** ** **** ** *** ** * *** * ** ** * *
consensus_1991#0 CAGACTGTCATGTGGATANNAACGTTGCCGAAGCCCNNGCGATT-GCCCGAACAATTACC 839
consensus_1991#1 CAAGG----AGGATCCTACAGAACCCGCGGCAGCCATCGCGTTTCGTCTGGCCTTTCTGC 237
** * * ** * ** * **** *** ** * * * * * *
consensus_1991#0 CTCG-CAGGNNGTNAACNCTCCAGACATTCCACTGCGCCCAANCGCACAAATAC-GCGCA 897
consensus_1991#1 AGCGTCAGTGCAGCGGCCATCGCGATGGCACGGTTCCCTGTGCCTTTGGGATACCGCGGA 297
** *** * ** ** * * * * * **** *** *
consensus_1991#0 CTAACGAGATGCGGGCANAACAGTTTTGACNAAGGGNACCCAAAGGAGNAGTGTNTAAAA 957
consensus_1991#1 ACATCGGGCCGCCGCCACCGCAG-----ACACCGTGGCCCC--GGCTGCTGTCCCATCAC 350
* ** * ** * ** *** ** * * *** * * ** *
consensus_1991#0 GGGCAANGGTCACACAAAGGACCCCGCNNAGTTCACAGCGGCGATTTGTCGGGCACCACA 1017
consensus_1991#1 TGGCGACCGCTGCATTGGGCAGCCGGCTA----CACACCACCCACTTATTAAGGGCGAC- 405
*** * * ** * * ** ** **** * * * ** * * * **
consensus_1991#0 CACAAAAATTGGCGTGCATCATTCAGACTATAGNAGTCTAACAACCAAAACAACAAAGGA 1077
consensus_1991#1 TTCACATTCCGCCCCGGCTCGAGC--CCTGCAGCACGTCATCGGC-GAAGCAGCTA---- 458
** * * * * ** * ** ** * * * * ** ** * *
consensus_1991#0 TCCCNCANTNGTTCTCGTGTCTCTCTNNCCNNNNTNTNTCCNNCCTCACGACCCGACNAC 1137
consensus_1991#1 TCCCGCCGCGG--CTCGAGCCCCGCATCACCAACGGCGACACGTAAGTCGCCTCGGCTGC 516
**** * * **** * * * * * * ** * ** * *
consensus_1991#0 GA-ANAACTNCNNTTCGACGTAGCNCTANCANACGNNANNAGCCATCGACAACCGANTAG 1196
consensus_1991#1 AACGCAGCAGCCTCGCATCATAG-GCGACGACACATTCCGCCTCACCTGCAG-------- 567
* * * * * * *** * * * ** ** * **
consensus_1991#0 ANTCAAAGACAGTGCATACCGA 1218
consensus_1991#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||