cluster # 1996

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Anopheles gambiae
cluster # 1996 cluster # 1996 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1996#0 length = 749 sequences # 1

consensus_1996#1 length = 190 sequences # 1

consensusID : consensus_1996#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 749
fasta sequence

                              [CCCGAGGTTCAACTGTTCAAGTACTTTGANAAGTATAATACACACACCGACTGGAACACGTGTCGACGTAGAGCGAGGGAAGGAATGGATGGCGGCTGGAAGTGGTGGGACATCAACATGTTTTATTTGAATTTAATTTAGTTACGGCTTTTTCGACGCCCTATGGTGGGGGGGCTTATTTTGTTGTGCGCCAACGGCTGTTCACGCGAAGGTTTATTTGCGCCACCGTTTTGCGTGTAGCTCCTTAGAAGTTCATAATTTAAAGCAAAGCATGCTCTGGACGAAAGACGGTTGCTACTACACGCGAAACAACAACCAAGGGTGTAGGTGTGGACGGCGCGGACTGGCTCCGTTAACGAACGTAGTGGCACCAATACTCCTTCCCGACACGCGTCACTCAATACGGAACTTATTCTAGCNTAAACACAAACAATGGATTCAGATTAGAAAGACCGAAAACACGANANAGCACAGTGGGGATCTGTGGGTGGGGATGTAATGTGTAGGCATTTACAAAGACACGAGGGACACACGAAAAAAAGCGGANACCCGGACCCACGAACCGCCGCAGAAACAGCTTACANAGACACAGATGGTAGGGTAGGAGGGAGGGTGGGGTGCAAGCACAGATGGACAAAGCGGCTCACCCGACAANTCGGNGACCGCCAAGTCGCCGCATACGGGNACCATCNGCGGTATCNACATCATANACACAGCACAAACAACACNNCTCGAAACAGCAATGCGAC]

[+] EMBL AL695103             [CCCGAGGTTCAACTGTTCAAGTACTTTGANAAGTATAATACACACACCGACTGGAACACGTGTCGACGTAGAGCGAGGGAAGGAATGGATGGCGGCTGGAAGTGGTGGGACATCAACATGTTTTATTTGAATTTAATTTAGTTACGGCTTTTTCGACGCCCTATGGTGGGGGGGCTTATTTTGTTGTGCGCCAACGGCTGTTCACGCGAAGGTTTATTTGCGCCACCGTTTTGCGTGTAGCTCCTTAGAAGTTCATAATTTAAAGCAAAGCATGCTCTGGACGAAAGACGGTTGCTACTACACGCGAAACAACAACCAAGGGTGTAGGTGTGGACGGCGCGGACTGGCTCCGTTAACGAACGTAGTGGCACCAATACTCCTTCCCGACACGCGTCACTCAATACGGAACTTATTCTAGCNTAAACACAAACAATGGATTCAGATTAGAAAGACCGAAAACACGANANAGCACAGTGGGGATCTGTGGGTGGGGATGTAATGTGTAGGCATTTACAAAGACACGAGGGACACACGAAAAAAAGCGGANACCCGGACCCACGAACCGCCGCAGAAACAGCTTACANAGACACAGATGGTAGGGTAGGAGGGAGGGTGGGGTGCAAGCACAGATGGACAAAGCGGCTCACCCGACAANTCGGNGACCGCCAAGTCGCCGCATACGGGNACCATCNGCGGTATCNACATCATANACACAGCACAAACAACACNNCTCGAAACAGCAATGCGAC]




>consensus_1996#0
CCCGAGGTTCAACTGTTCAAGTACTTTGANAAGTATAATACACACACCGACTGGAACACG
TGTCGACGTAGAGCGAGGGAAGGAATGGATGGCGGCTGGAAGTGGTGGGACATCAACATG
TTTTATTTGAATTTAATTTAGTTACGGCTTTTTCGACGCCCTATGGTGGGGGGGCTTATT
TTGTTGTGCGCCAACGGCTGTTCACGCGAAGGTTTATTTGCGCCACCGTTTTGCGTGTAG
CTCCTTAGAAGTTCATAATTTAAAGCAAAGCATGCTCTGGACGAAAGACGGTTGCTACTA
CACGCGAAACAACAACCAAGGGTGTAGGTGTGGACGGCGCGGACTGGCTCCGTTAACGAA
CGTAGTGGCACCAATACTCCTTCCCGACACGCGTCACTCAATACGGAACTTATTCTAGCN
TAAACACAAACAATGGATTCAGATTAGAAAGACCGAAAACACGANANAGCACAGTGGGGA
TCTGTGGGTGGGGATGTAATGTGTAGGCATTTACAAAGACACGAGGGACACACGAAAAAA
AGCGGANACCCGGACCCACGAACCGCCGCAGAAACAGCTTACANAGACACAGATGGTAGG
GTAGGAGGGAGGGTGGGGTGCAAGCACAGATGGACAAAGCGGCTCACCCGACAANTCGGN
GACCGCCAAGTCGCCGCATACGGGNACCATCNGCGGTATCNACATCATANACACAGCACA
AACAACACNNCTCGAAACAGCAATGCGAC

consensusID : consensus_1996#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 190
fasta sequence

                              [GATGAAGGCGAGCATACGCGACCGGCTGGCGAAGGACACCGACTACGATGCCATGCGGTTCCCCAACTGTTCCAAGTACTTTGAAAAGTAGTAATACACACACACACCGACTGGAACACGTGTCGACGTAGAGCGAGGAAAACAATGGATGGCGGCTGGAAGTGGTGGGACATCAACATGTTTTATTTGA]

[+] EMBL BX602990             [GATGAAGGCGAGCATACGCGACCGGCTGGCGAAGGACACCGACTACGATGCCATGCGGTTCCCCAACTGTTCCAAGTACTTTGAAAAGTAGTAATACACACACACACCGACTGGAACACGTGTCGACGTAGAGCGAGGAAAACAATGGATGGCGGCTGGAAGTGGTGGGACATCAACATGTTTTATTTGA]




>consensus_1996#1
GATGAAGGCGAGCATACGCGACCGGCTGGCGAAGGACACCGACTACGATGCCATGCGGTT
CCCCAACTGTTCCAAGTACTTTGAAAAGTAGTAATACACACACACACCGACTGGAACACG
TGTCGACGTAGAGCGAGGAAAACAATGGATGGCGGCTGGAAGTGGTGGGACATCAACATG
TTTTATTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1996#0      ---------------------------------------------------CCCGAGGTT 9
consensus_1996#1      GATGAAGGCGAGCATACGCGACCGGCTGGCGAAGGACACCGACTACGATGCCATGCGGTT 60
                                                                         *  * ****

consensus_1996#0      C---AACTGTTC-AAGTACTTTGANAAGTA-TAATACACACAC----CGACTGGAACACG 60
consensus_1996#1      CCCCAACTGTTCCAAGTACTTTGAAAAGTAGTAATACACACACACACCGACTGGAACACG 120
                      *   ******** *********** ***** ************    *************

consensus_1996#0      TGTCGACGTAGAGCGAGGGAAGGAATGGATGGCGGCTGGAAGTGGTGGGACATCAACATG 120
consensus_1996#1      TGTCGACGTAGAGCGAGGAAAACAATGGATGGCGGCTGGAAGTGGTGGGACATCAACATG 180
                      ****************** **  *************************************

consensus_1996#0      TTTTATTTGAATTTAATTTAGTTACGGCTTTTTCGACGCCCTATGGTGGGGGGGCTTATT 180
consensus_1996#1      TTTTATTTGA-------------------------------------------------- 190
                      **********                                                  

consensus_1996#0      TTGTTGTGCGCCAACGGCTGTTCACGCGAAGGTTTATTTGCGCCACCGTTTTGCGTGTAG 240
consensus_1996#1      ------------------------------------------------------------
                                                                                  

consensus_1996#0      CTCCTTAGAAGTTCATAATTTAAAGCAAAGCATGCTCTGGACGAAAGACGGTTGCTACTA 300
consensus_1996#1      ------------------------------------------------------------
                                                                                  

consensus_1996#0      CACGCGAAACAACAACCAAGGGTGTAGGTGTGGACGGCGCGGACTGGCTCCGTTAACGAA 360
consensus_1996#1      ------------------------------------------------------------
                                                                                  

consensus_1996#0      CGTAGTGGCACCAATACTCCTTCCCGACACGCGTCACTCAATACGGAACTTATTCTAGCN 420
consensus_1996#1      ------------------------------------------------------------
                                                                                  

consensus_1996#0      TAAACACAAACAATGGATTCAGATTAGAAAGACCGAAAACACGANANAGCACAGTGGGGA 480
consensus_1996#1      ------------------------------------------------------------
                                                                                  

consensus_1996#0      TCTGTGGGTGGGGATGTAATGTGTAGGCATTTACAAAGACACGAGGGACACACGAAAAAA 540
consensus_1996#1      ------------------------------------------------------------
                                                                                  

consensus_1996#0      AGCGGANACCCGGACCCACGAACCGCCGCAGAAACAGCTTACANAGACACAGATGGTAGG 600
consensus_1996#1      ------------------------------------------------------------
                                                                                  

consensus_1996#0      GTAGGAGGGAGGGTGGGGTGCAAGCACAGATGGACAAAGCGGCTCACCCGACAANTCGGN 660
consensus_1996#1      ------------------------------------------------------------
                                                                                  

consensus_1996#0      GACCGCCAAGTCGCCGCATACGGGNACCATCNGCGGTATCNACATCATANACACAGCACA 720
consensus_1996#1      ------------------------------------------------------------
                                                                                  

consensus_1996#0      AACAACACNNCTCGAAACAGCAATGCGAC 749
consensus_1996#1      -----------------------------