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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[CCGCGTTTCACGAACGATGTGATAGCGTCGTGTGCTTTTGGAGTGCGCATCAACTCGTTTCGAGACAAGGAAAACGTGTTCTACCGTTACGGCAAGGACATCACGAATTTTGGCCGGCTAAAAGTATTTCTCAAGATGATGGGATACCAGCTGATCCCGAAACTGATGGCATGGCTAGAGATTGATATTTTCGATCGCGAACACGTACAATTTTTCATAGACCTGTTCAGACAGTCGGTACAGGAACGTGAGCAACATGGCATTGTTCGTCCGGACATGATCCATCTGCTGATGCAAGCTAATAATGGTAAGCTGCGATATCAACCAACAGATCACGAGGAAGTGGAAGGCTTTGCAACGGCAAAGGAATCCAATGATGAGAAGGTTGTCCCAGAAGATATGGTAAAGCTCAGCGAGAATGAAATGGTAGCTCAGTGCCTGATATTCTTCCTAGCTGGCTTTGATATAATCGCATCTGTCATGACCTTTCTTCTGTATGAGGTAGCTCTAGATCCCGAAATCCAGCAGCGTTTGTACGAGGAGATTCAACAAGTGTCAGAATCACTAGATGGAAAGTCAATCACATATGATGCTTTGCAAAATATGCGTTATCTGGACATGGTTGTATCCGAAACGCTGCGAAAGTGGC]
[+] EMBL BM627860 [CCGCGTTTCACGAACGATGTGATAGCGTCGTGTGCTTTTGGAGTGCGCATCAACTCGTTTCGAGACAAGGAAAACGTGTTCTACCGTTACGGCAAGGACATCACGAATTTTGGCCGGCTAAAAGTATTTCTCAAGATGATGGGATACCAGCTGATCCCGAAACTGATGGCATGGCTAGAGATTGATATTTTCGATCGCGAACACGTACAATTTTTCATAGACCTGTTCAGACAGTCGGTACAGGAACGTGAGCAACATGGCATTGTTCGTCCGGACATGATCCATCTGCTGATGCAAGCTAATAATGGTAAGCTGCGATATCAACCAACAGATCACGAGGAAGTGGAAGGCTTTGCAACGGCAAAGGAATCCAATGATGAGAAGGTTGTCCCAGAAGATATGGTAAAGCTCAGCGAGAATGAAATGGTAGCTCAGTGCCTGATATTCTTCCTAGCTGGCTTTGATATAATCGCATCTGTCATGACCTTTCTTCTGTATGAGGTAGCTCTAGATCCCGAAATCCAGCAGCGTTTGTACGAGGAGATTCAACAAGTGTCAGAATCACTAGATGGAAAGTCAATCACATATGATGCTTTGCAAAATATGCGTTATCTGGACATGGTTGTATCCGAAACGCTGCGAAAGTGGC]
consensusID : consensus_2#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[CAGAATCNCCCGAGGTAACTGTTCAGACAGTCGGTACAGGAACGTGAGCAACATGGCATTGTTCGTCCGGACATGATCCATCTGCTGATGCAAGCTAATAATGGTAAGCTGCGATATCAACCAACAGATCACGAGGAAGTGGAAGGCTTTGCAACGGCAAAGGAATCCAATGATGAGAAGGTTGTCCCAGAAGATATGGTAAAGCTCAGCGAGAATGAAATGGTAGCTCAGTGCCTGATATTCTTCCTAGCTGGCTTTGATATAATCGCATCTGTCATGACCTTTCTTCTGTATGAGGTAGCTCTAGATCCCGAAATCCAGCAGCGTTTGTACGAGGAGATTCAACAAGTGTCAGAATCACTAGATGGAAAGTCAATCACATATGATGCTTTGCAAAATATGCGTTATCTGGACATGGTTGTATCCGAAACGCTGCGAAAGTGGCCATCACAACCTGCTACTGATCGACTGTGTAATCAAGATTACAAGGTGACTGATGTGACTCCGAATGTTGACATTATTATACCAAAGGGGTGCATCGTGTCCATCCCCATTGCCGGTTTGCATTATGATCCTGCCATTTACCCCGATCCAACCGCTTCGATCCAGAGCGCTTCAACGATGAGAATAAGCATAAGAT]
[+] EMBL AL931964 [CAGAATCNCCCGAGGTAACTGTTCAGACAGTCGGTACAGGAACGTGAGCAACATGGCATTGTTCGTCCGGACATGATCCATCTGCTGATGCAAGCTAATAATGGTAAGCTGCGATATCAACCAACAGATCACGAGGAAGTGGAAGGCTTTGCAACGGCAAAGGAATCCAATGATGAGAAGGTTGTCCCAGAAGATATGGTAAAGCTCAGCGAGAATGAAATGGTAGCTCAGTGCCTGATATTCTTCCTAGCTGGCTTTGATATAATCGCATCTGTCATGACCTTTCTTCTGTATGAGGTAGCTCTAGATCCCGAAATCCAGCAGCGTTTGTACGAGGAGATTCAACAAGTGTCAGAATCACTAGATGGAAAGTCAATCACATATGATGCTTTGCAAAATATGCGTTATCTGGACATGGTTGTATCCGAAACGCTGCGAAAGTGGCCATCACAACCTGCTACTGATCGACTGTGTAATCAAGATTACAAGGTGACTGATGTGACTCCGAATGTTGACATTATTATACCAAAGGGGTGCATCGTGTCCATCCCCATTGCCGGTTTGCATTATGATCCTGCCATTTACCCCGATCCAACCGCTTCGATCCAGAGCGCTTCAACGATGAGAATAAGCATAAGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2#0 CCGCGTTTCACGAACGATGTGATAGCGTCGTGTGCTTTTGGAGTGCGCATCAACTCGTTT 60
consensus_2#1 ------------------------------------------------------------
consensus_2#0 CGAGACAAGGAAAACGTGTTCTACCGTTACGGCAAGGACATCACGAATTTTGGCCGGCTA 120
consensus_2#1 ------------------------------------------------------------
consensus_2#0 AAAGTATTTCTCAAGATGATGGGATACCAGCTGATCCCGAAACTGATGGCATGGCTAGAG 180
consensus_2#1 ------------------------------------------------------------
consensus_2#0 ATTGATATTTTCGATCGCGAACACGTACAATTTTTCATAG-ACCTGTTCAGACAGTCGGT 239
consensus_2#1 -------------------------CAGAATCNCCCGAGGTAACTGTTCAGACAGTCGGT 35
* *** * * * *****************
consensus_2#0 ACAGGAACGTGAGCAACATGGCATTGTTCGTCCGGACATGATCCATCTGCTGATGCAAGC 299
consensus_2#1 ACAGGAACGTGAGCAACATGGCATTGTTCGTCCGGACATGATCCATCTGCTGATGCAAGC 95
************************************************************
consensus_2#0 TAATAATGGTAAGCTGCGATATCAACCAACAGATCACGAGGAAGTGGAAGGCTTTGCAAC 359
consensus_2#1 TAATAATGGTAAGCTGCGATATCAACCAACAGATCACGAGGAAGTGGAAGGCTTTGCAAC 155
************************************************************
consensus_2#0 GGCAAAGGAATCCAATGATGAGAAGGTTGTCCCAGAAGATATGGTAAAGCTCAGCGAGAA 419
consensus_2#1 GGCAAAGGAATCCAATGATGAGAAGGTTGTCCCAGAAGATATGGTAAAGCTCAGCGAGAA 215
************************************************************
consensus_2#0 TGAAATGGTAGCTCAGTGCCTGATATTCTTCCTAGCTGGCTTTGATATAATCGCATCTGT 479
consensus_2#1 TGAAATGGTAGCTCAGTGCCTGATATTCTTCCTAGCTGGCTTTGATATAATCGCATCTGT 275
************************************************************
consensus_2#0 CATGACCTTTCTTCTGTATGAGGTAGCTCTAGATCCCGAAATCCAGCAGCGTTTGTACGA 539
consensus_2#1 CATGACCTTTCTTCTGTATGAGGTAGCTCTAGATCCCGAAATCCAGCAGCGTTTGTACGA 335
************************************************************
consensus_2#0 GGAGATTCAACAAGTGTCAGAATCACTAGATGGAAAGTCAATCACATATGATGCTTTGCA 599
consensus_2#1 GGAGATTCAACAAGTGTCAGAATCACTAGATGGAAAGTCAATCACATATGATGCTTTGCA 395
************************************************************
consensus_2#0 AAATATGCGTTATCTGGACATGGTTGTATCCGAAACGCTGCGAAAGTGGC---------- 649
consensus_2#1 AAATATGCGTTATCTGGACATGGTTGTATCCGAAACGCTGCGAAAGTGGCCATCACAACC 455
**************************************************
consensus_2#0 ------------------------------------------------------------
consensus_2#1 TGCTACTGATCGACTGTGTAATCAAGATTACAAGGTGACTGATGTGACTCCGAATGTTGA 515
consensus_2#0 ------------------------------------------------------------
consensus_2#1 CATTATTATACCAAAGGGGTGCATCGTGTCCATCCCCATTGCCGGTTTGCATTATGATCC 575
consensus_2#0 ------------------------------------------------------------
consensus_2#1 TGCCATTTACCCCGATCCAACCGCTTCGATCCAGAGCGCTTCAACGATGAGAATAAGCAT 635
consensus_2#0 -----
consensus_2#1 AAGAT 640
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||