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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 727 fasta sequence
[CTGCNGCAGAATCGGCACGAGGTCTAACGGACGTTACTTGGTTTGAACNAAGCACATCAGCTGGCCACTATAATTTACCAACACCGGTGTACGCGTGTCATCTTTGCGATAATCATTTACGCTACAAATCATCGACTTCCCTGAAGAAGCACTTTTCTCTTTAAGCACGATATTGGCCACGGACGCCGGGGGATGTCCGCCGGNTTCGCTTCAAGCCCGACGACTGACGGNATGGTACTGGCTGCGAATCGTTCCGTGGACGAAAAGCTGAGGAAACACCACGAAGACGCAGCGAGCTCTGGAACAGGCAACAGAATAGTGGTGAGTGCTAACGAGGGTACTGGGCCGACTGGAAGCAAAGGCAAAAGGAAACAGCAAACCATCACAAGCGAAAGCGGTTGCAACCCAATGCGGGGATGAAGCGAAAGCCAACCGGGCCTAGCGGAGCGCAAATGGATGCGGCCGAAACCGAAGGCTTAAGATCAGATTCCATGAAGTCGATTGGCCATACGCACAGGTTNTCAGGATTGAGTTGGGCCGTTGAAGCGGTAGAACCACGGAAATCCATCATACAAGACCAACTGCCAAGGTGNCCAGAGCCAGGCGGAACGAGGCAGTCGGCCCATCGGGGAGGGTTGGGCGGCAGGCCGAATTGNCAAAAACAATTGGCCGGGGACCATCACGGGACACAGGCAGGACAGCGGGAAGGCCGGCTAGTGGCACGTCC]
[+] EMBL BX469635 [CTGCNGCAGAATCGGCACGAGGTCTAACGGACGTTACTTGGTTTGAACNAAGCACATCAGCTGGCCACTATAATTTACCAACACCGGTGTACGCGTGTCATCTTTGCGATAATCATTTACGCTACAAATCATCGACTTCCCTGAAGAAGCACTTTTCTCTTTAAGCACGATATTGGCCACGGACGCCGGGGGATGTCCGCCGGNTTCGCTTCAAGCCCGACGACTGACGGNATGGTACTGGCTGCGAATCGTTCCGTGGACGAAAAGCTGAGGAAACACCACGAAGACGCAGCGAGCTCTGGAACAGGCAACAGAATAGTGGTGAGTGCTAACGAGGGTACTGGGCCGACTGGAAGCAAAGGCAAAAGGAAACAGCAAACCATCACAAGCGAAAGCGGTTGCAACCCAATGCGGGGATGAAGCGAAAGCCAACCGGGCCTAGCGGAGCGCAAATGGATGCGGCCGAAACCGAAGGCTTAAGATCAGATTCCATGAAGTCGATTGGCCATACGCACAGGTTNTCAGGATTGAGTTGGGCCGTTGAAGCGGTAGAACCACGGAAATCCATCATACAAGACCAACTGCCAAGGTGNCCAGAGCCAGGCGGAACGAGGCAGTCGGCCCATCGGGGAGGGTTGGGCGGCAGGCCGAATTGNCAAAAACAATTGGCCGGGGACCATCACGGGACACAGGCAGGACAGCGGGAAGGCCGGCTAGTGGCACGTCC]
consensusID : consensus_2001#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[AATAGTGGTGAGGCTAACGAGGGTACTGGGCCGACTGGAAGCAAAGGCAAAAGGAAACAGCAAACATCACAAGCGAAAGCGGTGCAACCAATGCGGGATGAAGCGAAACCAACCGCCCTAGCGGAGGCAATGGATGCGCCGAAACCGAAGCTTAAGATAAATTCCATGAAGTCGATTGGCATACGCAAGTTTCAGATTGAGTTGGGCGTTGAAGCGGTAGAACCAGAATCATCATCAACCAATGCAGTGCCAGCAGCGACGGCATCGCCATCGGGAGGTGGCGCAGCGATTGCAAAACAATTGCCGGGACAGCACGGAACAGCAGCAGCGGAAGCCGCTGTGCGTCCGCCGGTGGGCATAAAGCAGGAGAAGGTGGAAGAGCCGAACCATTTCGGCACGGAATCGACCAAGCAGCCGAAAGATGTGAAGGATTTTATGGTAATGAAGCGGTACTTGAAATCGAGCGCAAAGCCGTCAATCAACGCCTAGGTGCGCGAGACCATCTAACGTTCGTTGTAGTACAGTAGAACCGTCGATTATCCGGGGGCGGATTAACCGGCCGGGCGGCTTANCCGTGCGCCATAATGTGACAGCTGTTCAAAC]
[+] EMBL BX627421 [AATAGTGGTGAGGCTAACGAGGGTACTGGGCCGACTGGAAGCAAAGGCAAAAGGAAACAGCAAACATCACAAGCGAAAGCGGTGCAACCAATGCGGGATGAAGCGAAACCAACCGCCCTAGCGGAGGCAATGGATGCGCCGAAACCGAAGCTTAAGATAAATTCCATGAAGTCGATTGGCATACGCAAGTTTCAGATTGAGTTGGGCGTTGAAGCGGTAGAACCAGAATCATCATCAACCAATGCAGTGCCAGCAGCGACGGCATCGCCATCGGGAGGTGGCGCAGCGATTGCAAAACAATTGCCGGGACAGCACGGAACAGCAGCAGCGGAAGCCGCTGTGCGTCCGCCGGTGGGCATAAAGCAGGAGAAGGTGGAAGAGCCGAACCATTTCGGCACGGAATCGACCAAGCAGCCGAAAGATGTGAAGGATTTTATGGTAATGAAGCGGTACTTGAAATCGAGCGCAAAGCCGTCAATCAACGCCTAGGTGCGCGAGACCATCTAACGTTCGTTGTAGTACAGTAGAACCGTCGATTATCCGGGGGCGGATTAACCGGCCGGGCGGCTTANCCGTGCGCCATAATGTGACAGCTGTTCAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2001#0 CTGCNGCAGAATCGGCACGAGGTCTAACGGACGTTACTTGGTTTGAACNAAGCACAT-CA 59
consensus_2001#1 ---------AATAGTGGTGAGG-CTAACGAGGGT-ACTGGGCCGACTGGAAGCAAAGGCA 49
*** * **** ****** ** *** ** ***** * **
consensus_2001#0 GCTGGCCACTATAATTTACCAACACCGGTGTACGCG-TGTCATCTTTGCGATAATCATTT 118
consensus_2001#1 AAAGGAAACAGCAAA----CATCACAAGCGAAAGCGGTGCAACCAATGCGGGATGAAGCG 105
** ** ** ** *** * * * *** ** * * **** * *
consensus_2001#0 ACGCTACAAATCATCGACTTCCCTGAAGAAGCACTTTTCTCTTTAAGCACGATATTGGCC 178
consensus_2001#1 AAACCAACCGCCCTAGCGGAGGCAATGGATGCGCCGAAACCGAAGCTTAAGATAAATTCC 165
* * * * * * * ** ** * * * **** **
consensus_2001#0 ACGGACGCCGGGGGATGTCCGCCGGNTTCGCTTCAAGCCCGACGACTGACGGNATGGTAC 238
consensus_2001#1 ATGAA-GTCGATTGGCATACGCAAGTTTCAGATTGAGTTGGGCG-TTGAAGCGGTAGAAC 223
* * * * ** * * *** * *** * ** * ** *** * * * **
consensus_2001#0 TGGCTGCGA-ATCGTTCCGTGGACGAAAAGCTGAGGAAACACCACGAAGACGCAGCGAGC 297
consensus_2001#1 CAGAATCATCATCAACCAATGCAGTGCCAGCAGCGACGGCATCGCCATCGGGAGGTG-GC 282
* * *** * ** * *** * * ** * * * * * * **
consensus_2001#0 TCTGGAACAGGCAACAGAATAGTGGTGAGTGCTAACGAGGGTACTGGGCCGACTGGAAGC 357
consensus_2001#1 GCAGCGATTG-CAAAACAATTGCCGGGACAGCACGGAACAGCAGCAGCGGAAGCCGCTGT 341
* * * * *** * *** * * ** ** * * * * * * *
consensus_2001#0 AAAGGCAAAAGGAAACAGCAAACCATCACAAGCGAAAGCGGTTGCAACCCAATGCGGGGA 417
consensus_2001#1 GCGTCCGCCGGTGGGCATAAAGCAGGAGAAGGTGGAAGAGC---CGAACCATTTCGGCAC 398
* * ** ** * * * * *** * * * *** * ***
consensus_2001#0 TGAAGCGAAAGCCAACCGGGCCTAGCGGAGCGCAAATGGATGCGGCCGAAACCGAAGGCT 477
consensus_2001#1 GGAATCGA---CCAAGCAG-CCGAAAGATGTGAAGGATTTTATGGTAATGAAGCGGTACT 454
*** *** **** * * ** * * * * * * ** * **
consensus_2001#0 TAAGATCAGATTCCATGAAGTCGATTGGCCATACGCACAGGTTNTCAGGATTGAGTTGGG 537
consensus_2001#1 TGAAATCGAGCGCAAAGCCGTCAATCA-----ACGCCTAGGTGCGCGAGACCATCTAACG 509
* * *** * * * *** ** **** **** * ** * *
consensus_2001#0 C-CGTTGAAG--CGGTAGAACCACGGAAATCCATCATACAAGACCAACTGCCAAGGTGNC 594
consensus_2001#1 TTCGTTGTAGTACAGTAGAACCGTCGATTATCCGGGGGCG-GATTAACCGGCCGGGCGGC 568
***** ** * ******** ** * * ** *** * * ** * *
consensus_2001#0 CAGA--GCCAGGCGGAACGAGGCAGTCGGCCCATCGGGGAGGGTTGGGCGGCAGGCCGAA 652
consensus_2001#1 TTANCCGTGCGCCATAATGTGACAGCTGTTCAAAC------------------------- 603
* * * ** * * *** * * * *
consensus_2001#0 TTGNCAAAAACAATTGGCCGGGGACCATCACGGGACACAGGCAGGACAGCGGGAAGGCCG 712
consensus_2001#1 ------------------------------------------------------------
consensus_2001#0 GCTAGTGGCACGTCC 727
consensus_2001#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||