cluster # 2042

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Anopheles gambiae
cluster # 2042 cluster # 2042 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2042#0 length = 634 sequences # 1

consensus_2042#1 length = 559 sequences # 1

consensusID : consensus_2042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [CCGTGCTGAGCAAGTGGACTAATTTGTAGAAAGTACCGTCGTCCCAGTTTATTTAACTAGATCCGTTTATTTATATGCATAATATTTACGCTAATGATAAGTGTGAAAGCAACCAACATAAAACAAGATTAGTTTAGTGAAGTGGTGAAATTTGATACCAACCATTCGTCCAAGGTCAGCCAAACGGTGGGGCAAACATCTGCTTGCAGTCCTGCGATGTCCCTTGCCACATTGGAAAGTGCCTTCTGTGAACCACCGATCGGTGCGATGATGGAAACTCCGGGAAAGAAGCGCAAGCGTAATGCGGAAACGAATCCATTCCTTAACTTTACTGAACAAACGTTCAGCATCCCTTCATCGACGCCGATCCACAATCGACAGATCGATAGCAGTGCGTTCGAGAATCCGTCCTTCCGGGTGGCGAACAAAGAGAACTACAATCTGTTTTCCGACTCCTGCATGGAGGTGAAGTCGATCGCGGATCTGGCCGGTGCAACCAAGCGCCCGAAAGCGAACACGCCCGACACGTGCAACCCGTTCGAGGTGATACGCAAACCGCCGAAGAAAAAGAAGAAACAGATGCACCCGGCCGGTACGGTACCGCTCGAGGAGAGCTGTTTCGAGAATCCCGGTT]

[+] EMBL BM603608             [CCGTGCTGAGCAAGTGGACTAATTTGTAGAAAGTACCGTCGTCCCAGTTTATTTAACTAGATCCGTTTATTTATATGCATAATATTTACGCTAATGATAAGTGTGAAAGCAACCAACATAAAACAAGATTAGTTTAGTGAAGTGGTGAAATTTGATACCAACCATTCGTCCAAGGTCAGCCAAACGGTGGGGCAAACATCTGCTTGCAGTCCTGCGATGTCCCTTGCCACATTGGAAAGTGCCTTCTGTGAACCACCGATCGGTGCGATGATGGAAACTCCGGGAAAGAAGCGCAAGCGTAATGCGGAAACGAATCCATTCCTTAACTTTACTGAACAAACGTTCAGCATCCCTTCATCGACGCCGATCCACAATCGACAGATCGATAGCAGTGCGTTCGAGAATCCGTCCTTCCGGGTGGCGAACAAAGAGAACTACAATCTGTTTTCCGACTCCTGCATGGAGGTGAAGTCGATCGCGGATCTGGCCGGTGCAACCAAGCGCCCGAAAGCGAACACGCCCGACACGTGCAACCCGTTCGAGGTGATACGCAAACCGCCGAAGAAAAAGAAGAAACAGATGCACCCGGCCGGTACGGTACCGCTCGAGGAGAGCTGTTTCGAGAATCCCGGTT]




>consensus_2042#0
CCGTGCTGAGCAAGTGGACTAATTTGTAGAAAGTACCGTCGTCCCAGTTTATTTAACTAG
ATCCGTTTATTTATATGCATAATATTTACGCTAATGATAAGTGTGAAAGCAACCAACATA
AAACAAGATTAGTTTAGTGAAGTGGTGAAATTTGATACCAACCATTCGTCCAAGGTCAGC
CAAACGGTGGGGCAAACATCTGCTTGCAGTCCTGCGATGTCCCTTGCCACATTGGAAAGT
GCCTTCTGTGAACCACCGATCGGTGCGATGATGGAAACTCCGGGAAAGAAGCGCAAGCGT
AATGCGGAAACGAATCCATTCCTTAACTTTACTGAACAAACGTTCAGCATCCCTTCATCG
ACGCCGATCCACAATCGACAGATCGATAGCAGTGCGTTCGAGAATCCGTCCTTCCGGGTG
GCGAACAAAGAGAACTACAATCTGTTTTCCGACTCCTGCATGGAGGTGAAGTCGATCGCG
GATCTGGCCGGTGCAACCAAGCGCCCGAAAGCGAACACGCCCGACACGTGCAACCCGTTC
GAGGTGATACGCAAACCGCCGAAGAAAAAGAAGAAACAGATGCACCCGGCCGGTACGGTA
CCGCTCGAGGAGAGCTGTTTCGAGAATCCCGGTT

consensusID : consensus_2042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [CGAGGTTAACGAGGCTCGTGCATTGAGGTGAAGTCTGATCGCGTGTATTTGGCCTGGTGCAACCAAGCGCCCGAAAGCGAACACGCCCGACACGTGCAACCCGTTCGAGGTGATACGCAAACCGCCAAAGAAAAAGAAGAAACAGATGCACCCTGGCCTGGTACGGTACCTGCTTGAGGAGAGCTGTTTCGAGAATCCCTGGTTTGAATCTTGCCGCCGCCGATAAGCAACCGGTAAACCCGTTCGAGGTACCACGCGATGGAGACGAAAGCAAACGCCAGCGAGGCGGAACGAGTTGAGCCTGCTGCTTCGTCAACAGTGCGCTTAACATTCGCGGAACAGANNCANAGGGAACGGANACGATACAATCCGTTCGAGATCGTGCGCCCGAAAGAGGCGGACCCGGAGGCAACACAGGCAGCGAGGGAGCTGCCGGTACCGGAACTGGCTGGCATTGAGAATCCTGCGCACTGGCAGCATGCCACAGTACGCTATTGCCGTATCCGTTCACCACCNATCACTGAAANGCCATCNGCTATCNATTTCCAGGAGCTGCCGC]

[+] EMBL AL695390             [CGAGGTTAACGAGGCTCGTGCATTGAGGTGAAGTCTGATCGCGTGTATTTGGCCTGGTGCAACCAAGCGCCCGAAAGCGAACACGCCCGACACGTGCAACCCGTTCGAGGTGATACGCAAACCGCCAAAGAAAAAGAAGAAACAGATGCACCCTGGCCTGGTACGGTACCTGCTTGAGGAGAGCTGTTTCGAGAATCCCTGGTTTGAATCTTGCCGCCGCCGATAAGCAACCGGTAAACCCGTTCGAGGTACCACGCGATGGAGACGAAAGCAAACGCCAGCGAGGCGGAACGAGTTGAGCCTGCTGCTTCGTCAACAGTGCGCTTAACATTCGCGGAACAGANNCANAGGGAACGGANACGATACAATCCGTTCGAGATCGTGCGCCCGAAAGAGGCGGACCCGGAGGCAACACAGGCAGCGAGGGAGCTGCCGGTACCGGAACTGGCTGGCATTGAGAATCCTGCGCACTGGCAGCATGCCACAGTACGCTATTGCCGTATCCGTTCACCACCNATCACTGAAANGCCATCNGCTATCNATTTCCAGGAGCTGCCGC]




>consensus_2042#1
CGAGGTTAACGAGGCTCGTGCATTGAGGTGAAGTCTGATCGCGTGTATTTGGCCTGGTGC
AACCAAGCGCCCGAAAGCGAACACGCCCGACACGTGCAACCCGTTCGAGGTGATACGCAA
ACCGCCAAAGAAAAAGAAGAAACAGATGCACCCTGGCCTGGTACGGTACCTGCTTGAGGA
GAGCTGTTTCGAGAATCCCTGGTTTGAATCTTGCCGCCGCCGATAAGCAACCGGTAAACC
CGTTCGAGGTACCACGCGATGGAGACGAAAGCAAACGCCAGCGAGGCGGAACGAGTTGAG
CCTGCTGCTTCGTCAACAGTGCGCTTAACATTCGCGGAACAGANNCANAGGGAACGGANA
CGATACAATCCGTTCGAGATCGTGCGCCCGAAAGAGGCGGACCCGGAGGCAACACAGGCA
GCGAGGGAGCTGCCGGTACCGGAACTGGCTGGCATTGAGAATCCTGCGCACTGGCAGCAT
GCCACAGTACGCTATTGCCGTATCCGTTCACCACCNATCACTGAAANGCCATCNGCTATC
NATTTCCAGGAGCTGCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2042#0      CCGTGCTGAGCAAGTGGACTAATTTGTAGAAAGTACCGTCGTCCCAGTTTATTTAACTAG 60
consensus_2042#1      -CGAGGTTAACGAG---GCTCGTGCATTGAGGTGAAGTCTGATCGCGTGTATTTGGCCTG 56
                       ** * * * * **    **  *   * **    *     *  *  ** *****  *  *

consensus_2042#0      ATCCGTTTATTTATATGCATAATATTTACGCTAATGATAAGTGTGAAAGCAACCAACATA 120
consensus_2042#1      GTGCAACCAAGCGCCCGAA-AGCGAACACGCC--CGACACGTGC-AACCCGTTCGAGGTG 112
                       * *    *       * * *      ****    ** * ***  **  *   * *  * 

consensus_2042#0      AAACAAGATTAGTTTAGTGAAGTGGTGAAATTTGATACCAACCATTCGTCCAAGGTCAGC 180
consensus_2042#1      ATACGCAAACCGCCAAAGAAAAAGAAGAAACA-GATGC--ACCCT--GGCCTGGTACGGT 167
                      * **   *   *   *   **  *  ****   *** *  *** *  * **  *  * * 

consensus_2042#0      CAAACGGTGGGGCAAACATCTGCTTGCAGTCCTGCGATGTCCCTTGCCACATTGGAAAGT 240
consensus_2042#1      ACCTGCTTGAGGAGAGCTGTTTCGAGAATCCCTGGTTTGAATCTTGCCGCCGCCGATAA- 226
                             ** **  * *   * *  * *  ****   **   ****** *    ** *  

consensus_2042#0      GCCTTCTGTGAACCACCGATCGGTGCGATG--ATGGAAACTCCGGGAAAGAAGCGCAAGC 298
consensus_2042#1      GCAACCGGTAAACCCGTTCGAGGTACCACGCGATGGAGAC----GAAAGCAAACGCCAGC 282
                      **   * ** ****       *** * * *  ***** **    * **  ** *** ***

consensus_2042#0      GTAATGCGGAAACGAATCCATTCCTTAACTTTACTGAACAAACGTTCAGCATCCCTTCAT 358
consensus_2042#1      G--AGGCGGAA-CGAGTTGAGCCTGCTGCTTCGTCAACAGTGCGCTTAACATTCG----- 334
                      *  * ****** *** *  *  *     ***     *     ** * * *** *      

consensus_2042#0      CGACGCCGATCCACAATCGACAGAT-CGATAGCAGTGCGTTCGAGAATCCGTCCTTCCGG 417
consensus_2042#1      CGGAACAGANNCANAGGGAACGGANACGATA-CAATCCGTTCGAGATCGTGCGCCCGAAA 393
                      **   * **  ** *    ** **  ***** ** * *********    *  *      

consensus_2042#0      GTGGCGAACAAAGAGAACTACAATCTGTTTTCCGACTCCTGCA-TGGAGGTGAAGTCGAT 476
consensus_2042#1      GAGGCGGACCCGGAGG----------------CAACACAGGCAGCGAGGGAGCTGCCGGT 437
                      * **** **   ***                 * ** *  ***  *  ** *  * ** *

consensus_2042#0      CGCGGATCTGGCCGGTGCAACCAAGCGCCCGAAAGCGAACACGCCCGACACGTGCAACCC 536
consensus_2042#1      ACCGGAACTGGCTGG--CATTGAGAATCCTGCGCACTGGCA-GCATGCCACA-GTACGCT 493
                        **** ***** **  **   *    ** *    *   ** **  * ***  * *  * 

consensus_2042#0      GTTCGAGGTGATACGCAAACCGCCGAAGAAAAAGAAGAAA-CAGATGCACCCGGCCGGTA 595
consensus_2042#1      ATT-GCCGT-ATCCGTTCACCACCNATCACTGAAANGCCATCNGCTATCNATTTCCAGGA 551
                       ** *  ** ** **   *** ** *  *   * * *  * * * *        ** * *

consensus_2042#0      CGGTACCGCTCGAGGAGAGCTGTTTCGAGAATCCCGGTT 634
consensus_2042#1      -GCTGCCGC------------------------------ 559
                       * * ****