cluster # 2044

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Anopheles gambiae
cluster # 2044 cluster # 2044 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2044#0 length = 641 sequences # 1

consensus_2044#1 length = 624 sequences # 1

consensusID : consensus_2044#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence

                              [CCGGTCGTGTAAATGTAACTTTAGATCACGTGGCAGGGTAGTTGTGTTTTTGTGTCACACATGAACTGCATTATTAGCAAACATGCACTGTTACATCTGATCAGGAAAGACACCTTTTCATTAGTGGTAGAAACAGTATTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATAAACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGTGCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAACAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCAGTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAACGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATCGTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATGGCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGTGTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGC]

[+] EMBL BM640800             [CCGGTCGTGTAAATGTAACTTTAGATCACGTGGCAGGGTAGTTGTGTTTTTGTGTCACACATGAACTGCATTATTAGCAAACATGCACTGTTACATCTGATCAGGAAAGACACCTTTTCATTAGTGGTAGAAACAGTATTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATAAACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGTGCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAACAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCAGTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAACGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATCGTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATGGCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGTGTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGC]




>consensus_2044#0
CCGGTCGTGTAAATGTAACTTTAGATCACGTGGCAGGGTAGTTGTGTTTTTGTGTCACAC
ATGAACTGCATTATTAGCAAACATGCACTGTTACATCTGATCAGGAAAGACACCTTTTCA
TTAGTGGTAGAAACAGTATTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATA
AACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGT
GCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAA
CAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCA
GTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAA
CGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATC
GTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATG
GCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGT
GTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGC

consensusID : consensus_2044#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [CCGCCCACGCGTCCGAAACAGTATGTATGTATTCTATGTATGCGGTAGAAAAAAAACGCATTAAAAAAGTTTATAATTTTTACTTTTTTGGTTTCTTAAAACAGTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATAAACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGTGCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAACAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCAGTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAACGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATCGTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATGGCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGTGTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGCAATCATGGCACTTATGGT]

[+] EMBL BM584465             [CCGCCCACGCGTCCGAAACAGTATGTATGTATTCTATGTATGCGGTAGAAAAAAAACGCATTAAAAAAGTTTATAATTTTTACTTTTTTGGTTTCTTAAAACAGTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATAAACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGTGCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAACAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCAGTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAACGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATCGTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATGGCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGTGTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGCAATCATGGCACTTATGGT]




>consensus_2044#1
CCGCCCACGCGTCCGAAACAGTATGTATGTATTCTATGTATGCGGTAGAAAAAAAACGCA
TTAAAAAAGTTTATAATTTTTACTTTTTTGGTTTCTTAAAACAGTATTGTTTAAACAATA
CTTAATGTAGAGGAGCTTAGTGATAAACGGTGATTGGTGTAAGTGTTGATTAACAGTAGG
AAAATTACAAGTTATGGTTGGTTGTGCGCTGGAACCGAAAATGGCAGTACATTGCGTGAC
GTTATCGGAACTAGAAGAACGTAAACAAAAGCAACTTAATGAAAACGGCGATGTAGAAGA
GGATTGCAGCGAGAAATTTCCATCAGTGGGACCAATGCTGACCTCGAAACTGGGAGGCTT
TTGCAACCGAAAATTTATCTTCAAACGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGA
AGCAAGGTTCCTGCTAGAAGATATCGTTGCTGGACTATCTGTTGGTTTGACTGTGATACC
ACAAGGGATTGCTTTTGCTGTGATGGCCAACCTGGAGCCCCAGTATGGACTGTATTCAGC
ATTTATGGGATGCTTTGTATACTGTGTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCC
AACGGCAATCATGGCACTTATGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2044#0      CCGGTCGTGTAAATGTAACTTTAGATCACGTGGCAGGGTAGTTGTGTTTTTGTGTCACAC 60
consensus_2044#1      ---------------------CCGCCCACGCGTCCGAAACAGTATGTATGTATTCTATGT 39
                                             *  **** * * *      * *** * * *   *   

consensus_2044#0      ATGAACTGCATTATTAGCAAACATGCACTGTTACATCTGATCAGGAAAGACACCTTTTCA 120
consensus_2044#1      ATG--------CGGTAGAAAAAAAACGC-ATTAAAAAAGTTTATAATTTTTACTTTTTTG 90
                      ***           *** *** *  * *  *** *   * * *  *     ** ****  

consensus_2044#0      TTAGTGGTAGAAACAGTATTATTGTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATA 180
consensus_2044#1      GT--TTCTTAAAACAGTATT---GTTTAAACAATACTTAATGTAGAGGAGCTTAGTGATA 145
                       *  *  *  **********   *************************************

consensus_2044#0      AACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGT 240
consensus_2044#1      AACGGTGATTGGTGTAAGTGTTGATTAACAGTAGGAAAATTACAAGTTATGGTTGGTTGT 205
                      ************************************************************

consensus_2044#0      GCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAA 300
consensus_2044#1      GCGCTGGAACCGAAAATGGCAGTACATTGCGTGACGTTATCGGAACTAGAAGAACGTAAA 265
                      ************************************************************

consensus_2044#0      CAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCA 360
consensus_2044#1      CAAAAGCAACTTAATGAAAACGGCGATGTAGAAGAGGATTGCAGCGAGAAATTTCCATCA 325
                      ************************************************************

consensus_2044#0      GTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAA 420
consensus_2044#1      GTGGGACCAATGCTGACCTCGAAACTGGGAGGCTTTTGCAACCGAAAATTTATCTTCAAA 385
                      ************************************************************

consensus_2044#0      CGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATC 480
consensus_2044#1      CGTCTGCCAATTCTGCAATGGTTGCCGGCGTATGAAGCAAGGTTCCTGCTAGAAGATATC 445
                      ************************************************************

consensus_2044#0      GTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATG 540
consensus_2044#1      GTTGCTGGACTATCTGTTGGTTTGACTGTGATACCACAAGGGATTGCTTTTGCTGTGATG 505
                      ************************************************************

consensus_2044#0      GCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGT 600
consensus_2044#1      GCCAACCTGGAGCCCCAGTATGGACTGTATTCAGCATTTATGGGATGCTTTGTATACTGT 565
                      ************************************************************

consensus_2044#0      GTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGC------------------ 641
consensus_2044#1      GTGTTTGGAAGCTGCAAGGATCTTACTATCGGCCCAACGGCAATCATGGCACTTATGGT 624
                      *****************************************