cluster # 2064

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Anopheles gambiae
cluster # 2064 cluster # 2064 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2064#0 length = 719 sequences # 1

consensus_2064#1 length = 192 sequences # 1

consensusID : consensus_2064#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 719
fasta sequence

                              [ATCCGCCNAGGTTAATTGTTGAAGGAACAGTGTANCTATAGAACTGTTTAGCTTTAAATCGTTTCCGCGTTGATTTGATGCCTTGCCTTGGTTTCAAGTTTGGTTCATAGATGTTTTGTATTTTCGTAACTCCTGTACTGGCGTTAAAAAACGGAAATGGATCTGGTGTTGTTAGGACCAGGCAAACAACCACATAGGCAAGACGGGCTTAACTTACTTTAGCGTTATGGGGGAACTTTTGTATAGCACCGTTCCGCGTACCGGCTTTTTTCCCTTTTCCCATTGAATTGGCCTTGGACCGGCGGAACACAAAACGTNTACCGNACATGGCCCAATGGAGCGGACTGCAATGGCTTGACCGGAACTTAGCACACTTGTACTTGGCGTTATAACCCCAGTTANCCGGGTTAGACCCGCCGTTTTTCCGGGGANTTACCGTTTACCAAATTACCAAATTTCCCCCCGGAAGGAGGGAAAAAAGAACCCCTTGGAGACAACAACGTGGGGGGCTTTTTATCTAAAACAAGAAGCGTTGCCGTTAACCGAGAAGGAGCAGCATAAAAGGAAGAGAACACCCGGACCCCCGGCAAGTTTCCTGGTCCCCCCCGGGTAAGTCCCGAATTCCAGGGGTGGAGCCAACCTAGGGGGCGCCACANGCGAAAAGTTCCCAAGAAGACAAGAATTGTTATGCCCCCCAAGCCGTATGAAGATAGGANGCC]

[+] EMBL AL932416             [ATCCGCCNAGGTTAATTGTTGAAGGAACAGTGTANCTATAGAACTGTTTAGCTTTAAATCGTTTCCGCGTTGATTTGATGCCTTGCCTTGGTTTCAAGTTTGGTTCATAGATGTTTTGTATTTTCGTAACTCCTGTACTGGCGTTAAAAAACGGAAATGGATCTGGTGTTGTTAGGACCAGGCAAACAACCACATAGGCAAGACGGGCTTAACTTACTTTAGCGTTATGGGGGAACTTTTGTATAGCACCGTTCCGCGTACCGGCTTTTTTCCCTTTTCCCATTGAATTGGCCTTGGACCGGCGGAACACAAAACGTNTACCGNACATGGCCCAATGGAGCGGACTGCAATGGCTTGACCGGAACTTAGCACACTTGTACTTGGCGTTATAACCCCAGTTANCCGGGTTAGACCCGCCGTTTTTCCGGGGANTTACCGTTTACCAAATTACCAAATTTCCCCCCGGAAGGAGGGAAAAAAGAACCCCTTGGAGACAACAACGTGGGGGGCTTTTTATCTAAAACAAGAAGCGTTGCCGTTAACCGAGAAGGAGCAGCATAAAAGGAAGAGAACACCCGGACCCCCGGCAAGTTTCCTGGTCCCCCCCGGGTAAGTCCCGAATTCCAGGGGTGGAGCCAACCTAGGGGGCGCCACANGCGAAAAGTTCCCAAGAAGACAAGAATTGTTATGCCCCCCAAGCCGTATGAAGATAGGANGCC]




>consensus_2064#0
ATCCGCCNAGGTTAATTGTTGAAGGAACAGTGTANCTATAGAACTGTTTAGCTTTAAATC
GTTTCCGCGTTGATTTGATGCCTTGCCTTGGTTTCAAGTTTGGTTCATAGATGTTTTGTA
TTTTCGTAACTCCTGTACTGGCGTTAAAAAACGGAAATGGATCTGGTGTTGTTAGGACCA
GGCAAACAACCACATAGGCAAGACGGGCTTAACTTACTTTAGCGTTATGGGGGAACTTTT
GTATAGCACCGTTCCGCGTACCGGCTTTTTTCCCTTTTCCCATTGAATTGGCCTTGGACC
GGCGGAACACAAAACGTNTACCGNACATGGCCCAATGGAGCGGACTGCAATGGCTTGACC
GGAACTTAGCACACTTGTACTTGGCGTTATAACCCCAGTTANCCGGGTTAGACCCGCCGT
TTTTCCGGGGANTTACCGTTTACCAAATTACCAAATTTCCCCCCGGAAGGAGGGAAAAAA
GAACCCCTTGGAGACAACAACGTGGGGGGCTTTTTATCTAAAACAAGAAGCGTTGCCGTT
AACCGAGAAGGAGCAGCATAAAAGGAAGAGAACACCCGGACCCCCGGCAAGTTTCCTGGT
CCCCCCCGGGTAAGTCCCGAATTCCAGGGGTGGAGCCAACCTAGGGGGCGCCACANGCGA
AAAGTTCCCAAGAAGACAAGAATTGTTATGCCCCCCAAGCCGTATGAAGATAGGANGCC

consensusID : consensus_2064#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 192
fasta sequence

                              [ACCTTATTTGGTTCGGCTTTGAAGAGACTGTGGCGCGAAAACGGAAAAGACTCTAGTATTTGAATGAGTGGAGAGGGATTGTTGAAGGAACAGTGTAGTATAGAACTGTTTAGCTTTAAATCGTTTCCGCGTTGATTTGATGCCTTGCTTGTTCAGTTTGTTCATAGATGTTTTGTATTTTCGTAACTCCTG]

[+] EMBL BX611229             [ACCTTATTTGGTTCGGCTTTGAAGAGACTGTGGCGCGAAAACGGAAAAGACTCTAGTATTTGAATGAGTGGAGAGGGATTGTTGAAGGAACAGTGTAGTATAGAACTGTTTAGCTTTAAATCGTTTCCGCGTTGATTTGATGCCTTGCTTGTTCAGTTTGTTCATAGATGTTTTGTATTTTCGTAACTCCTG]




>consensus_2064#1
ACCTTATTTGGTTCGGCTTTGAAGAGACTGTGGCGCGAAAACGGAAAAGACTCTAGTATT
TGAATGAGTGGAGAGGGATTGTTGAAGGAACAGTGTAGTATAGAACTGTTTAGCTTTAAA
TCGTTTCCGCGTTGATTTGATGCCTTGCTTGTTCAGTTTGTTCATAGATGTTTTGTATTT
TCGTAACTCCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2064#0      ------------------------------------------------------------
consensus_2064#1      ACCTTATTTGGTTCGGCTTTGAAGAGACTGTGGCGCGAAAACGGAAAAGACTCTAGTATT 60
                                                                                  

consensus_2064#0      ---ATCCGCCNAGGTTAATTGTTGAAGGAACAGTGTANCTATAGAACTGTTTAGCTTTAA 57
consensus_2064#1      TGAATGAGTGGAGAGGGATTGTTGAAGGAACAGTGTAG-TATAGAACTGTTTAGCTTTAA 119
                         **  *   **    ********************  *********************

consensus_2064#0      ATCGTTTCCGCGTTGATTTGATGCCTTGCCTTGGTTTCAAGTTTGGTTCATAGATGTTTT 117
consensus_2064#1      ATCGTTTCCGCGTTGATTTGATGCCTTGCTT--GTTC--AGTTTG-TTCATAGATGTTTT 174
                      ***************************** *  ***   ****** **************

consensus_2064#0      GTATTTTCGTAACTCCTGTACTGGCGTTAAAAAACGGAAATGGATCTGGTGTTGTTAGGA 177
consensus_2064#1      GTATTTTCGTAACTCCTG------------------------------------------ 192
                      ******************                                          

consensus_2064#0      CCAGGCAAACAACCACATAGGCAAGACGGGCTTAACTTACTTTAGCGTTATGGGGGAACT 237
consensus_2064#1      ------------------------------------------------------------
                                                                                  

consensus_2064#0      TTTGTATAGCACCGTTCCGCGTACCGGCTTTTTTCCCTTTTCCCATTGAATTGGCCTTGG 297
consensus_2064#1      ------------------------------------------------------------
                                                                                  

consensus_2064#0      ACCGGCGGAACACAAAACGTNTACCGNACATGGCCCAATGGAGCGGACTGCAATGGCTTG 357
consensus_2064#1      ------------------------------------------------------------
                                                                                  

consensus_2064#0      ACCGGAACTTAGCACACTTGTACTTGGCGTTATAACCCCAGTTANCCGGGTTAGACCCGC 417
consensus_2064#1      ------------------------------------------------------------
                                                                                  

consensus_2064#0      CGTTTTTCCGGGGANTTACCGTTTACCAAATTACCAAATTTCCCCCCGGAAGGAGGGAAA 477
consensus_2064#1      ------------------------------------------------------------
                                                                                  

consensus_2064#0      AAAGAACCCCTTGGAGACAACAACGTGGGGGGCTTTTTATCTAAAACAAGAAGCGTTGCC 537
consensus_2064#1      ------------------------------------------------------------
                                                                                  

consensus_2064#0      GTTAACCGAGAAGGAGCAGCATAAAAGGAAGAGAACACCCGGACCCCCGGCAAGTTTCCT 597
consensus_2064#1      ------------------------------------------------------------
                                                                                  

consensus_2064#0      GGTCCCCCCCGGGTAAGTCCCGAATTCCAGGGGTGGAGCCAACCTAGGGGGCGCCACANG 657
consensus_2064#1      ------------------------------------------------------------
                                                                                  

consensus_2064#0      CGAAAAGTTCCCAAGAAGACAAGAATTGTTATGCCCCCCAAGCCGTATGAAGATAGGANG 717
consensus_2064#1      ------------------------------------------------------------
                                                                                  

consensus_2064#0      CC 719
consensus_2064#1      --