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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1276 fasta sequence
[TCATGCCAAGAATCCGAGGTNATTTAGATCTGGATCCAGATGATCGACGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGTGGAAGCAAATATTGATACCACAGGAATCAAACGAGAGCCATATGCGCTGCGGGACATACCTACGAATGTTTCACACGAATAGAACACACTGCAAGGGATTGGGCCACTACGAACGCGCTACAACCAGCTTAGCGCTCAGAGTAATNGCGCNTGGCGTGATTGCTGNGGGGAACCTGGTNTCCNGGGCCCACCATTGCAGTANNATGGGGCACTNTCTTTTAAACCGGGCCTGGTATTNNCTTAAACACCTTTGTGCCTTAGGNGAACCGTATATNGNGGGNGCATACAATAGGTATCATCACTGCGTCACTTTTAACCCGTGGGCGGAAACCGAATTATAAAACCCCGNGGTAAGNACAACNAAGAAATAAGACCNGANATGGANGNGCNAGTTNAAACACCAGCTACGTNGGAAGAAAAAAAACATATACCCGGNCGCCAAGNGAGNGACGGCNCNCCGGANTTACATNCGGCATATTGGGGGNGGCCGCCGCCCNACCACAANCGATACCACGCGAGNNGCGCCAGCAGGACAGNAACACACAAGGGGGCACGAGAAACCCCCACCANAGGCGCCACAGAGCCGGCGNACACACAACAGGGAACGAACACAACAACACCGGCACCAAAGGGGCAGAAAAAACCACAGCGAACAAAGAGGCACCAGGCACACCATAGGCCAACATNCCCGGANAAACAACGCCAAAAACAAGGGANCACANNCAAANAAACCACCGGACAGCATCACANACAGACACAACGNCGGCCCACACGGGCAACACACACCACGANGGGTANAAACCATCACGAAACAACAANATATCATAAACAANAAATNAACNCCANCACAAAACACAAACAAGGGAANAAAACAACAAACCCANAANAAAGAAGGCNGAGAAACACGAAGNACAAAACAAACGAGACCACCCACACACANCAGCAGCAATAGNGANTAAACACCACNAGAGACGANCAGACAGNCAAAAGCANAACGAGGAGACGACCNCGACGGGANCAAACAAACCACGAAGGGNAACAACGCGAGNAAGCCCACCAAAAACCGNACCNCGCACGAACAGCAAACCAAAAGGGNGGANACCCCCAGACAGGAAAANNGACCAGCTAACCCNGAACAACCAAGAGCAACGNCGCAACCAAAAGGAGAGTCAAACAAGA]
[+] EMBL AL695542 [TCATGCCAAGAATCCGAGGTNATTTAGATCTGGATCCAGATGATCGACGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGTGGAAGCAAATATTGATACCACAGGAATCAAACGAGAGCCATATGCGCTGCGGGACATACCTACGAATGTTTCACACGAATAGAACACACTGCAAGGGATTGGGCCACTACGAACGCGCTACAACCAGCTTAGCGCTCAGAGTAATNGCGCNTGGCGTGATTGCTGNGGGGAACCTGGTNTCCNGGGCCCACCATTGCAGTANNATGGGGCACTNTCTTTTAAACCGGGCCTGGTATTNNCTTAAACACCTTTGTGCCTTAGGNGAACCGTATATNGNGGGNGCATACAATAGGTATCATCACTGCGTCACTTTTAACCCGTGGGCGGAAACCGAATTATAAAACCCCGNGGTAAGNACAACNAAGAAATAAGACCNGANATGGANGNGCNAGTTNAAACACCAGCTACGTNGGAAGAAAAAAAACATATACCCGGNCGCCAAGNGAGNGACGGCNCNCCGGANTTACATNCGGCATATTGGGGGNGGCCGCCGCCCNACCACAANCGATACCACGCGAGNNGCGCCAGCAGGACAGNAACACACAAGGGGGCACGAGAAACCCCCACCANAGGCGCCACAGAGCCGGCGNACACACAACAGGGAACGAACACAACAACACCGGCACCAAAGGGGCAGAAAAAACCACAGCGAACAAAGAGGCACCAGGCACACCATAGGCCAACATNCCCGGANAAACAACGCCAAAAACAAGGGANCACANNCAAANAAACCACCGGACAGCATCACANACAGACACAACGNCGGCCCACACGGGCAACACACACCACGANGGGTANAAACCATCACGAAACAACAANATATCATAAACAANAAATNAACNCCANCACAAAACACAAACAAGGGAANAAAACAACAAACCCANAANAAAGAAGGCNGAGAAACACGAAGNACAAAACAAACGAGACCACCCACACACANCAGCAGCAATAGNGANTAAACACCACNAGAGACGANCAGACAGNCAAAAGCANAACGAGGAGACGACCNCGACGGGANCAAACAAACCACGAAGGGNAACAACGCGAGNAAGCCCACCAAAAACCGNACCNCGCACGAACAGCAAACCAAAAGGGNGGANACCCCCAGACAGGAAAANNGACCAGCTAACCCNGAACAACCAAGAGCAACGNCGCAACCAAAAGGAGAGTCAAACAAGA]
consensusID : consensus_2067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence
[GGCTGCGACCGATGCCGGGAGGGTGACGCTACGTTCGAGGAGCGTTTCAACATGATCTGCTGTCCCGCCTGTCGCCGGGAGTACTCGAAGGAGCTGAACCTGGAGGAACTGCCAACAGTGTGTGTGTACTGTTCGGCGGAAATTCCCTCCGAATGGTTAAGCCAAATTTTGGATCTGGATCCAGATGATCGTCGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGGCAAGCAAATATTGATCCACAGCAATCAAACGAGAGCCATTGCGCTGCGGCACATCCTCGAATGTTTCACACGAATAGCCACCTGCAAGGGATTGGCCCACTCGAACGCGCTCAACCAGCTAGCGCTAGAGTATGCGCTGCTAATGCGGGAACGGTTCGGTCACATGAGTTTGGAATTTTTAACCGGCTGTTTCTACCTGCTGGACGTTTGGGCTATGTTTTGCTATTACGGCGACGATGAACCGGAGCAGCAGGCCGAGGAGCGTACCGTGCTGAAACAGTTCCGCCAGGCGCTCGCTATGATTGGCGCCGACAATCGGGGGCAGATTTTGGATTACATGCAGCGGTACAAGATAATCGACGGGGAATCGATGGCAGAATGCATCGAAACAATGGAGCAAACGGCTTAATAACGCTTTGTTTTTTTTTTTGTAATTCAAATTTTAATTTCCTTTTCTTTGCTTCACCAACGGTTCGCGCATCGCCGGTGAGTGGTTACATTGTTTTTGTTTCGGGCGC]
[+] EMBL BX608716 [GGCTGCGACCGATGCCGGGAGGGTGACGCTACGTTCGAGGAGCGTTTCAACATGATCTGCTGTCCCGCCTGTCGCCGGGAGTACTCGAAGGAGCTGAACCTGGAGGAACTGCCAACAGTGTGTGTGTACTGTTCGGCGGAAATTCCCTCCGAATGGTTAAGCCAAATTTTGGATCTGGATCCAGATGATCGTCGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGGCAAGCAAATATTGATCCACAGCAATCAAACGAGAGCCATTGCGCTGCGGCACATCCTCGAATGTTTCACACGAATAGCCACCTGCAAGGGATTGGCCCACTCGAACGCGCTCAACCAGCTAGCGCTAGAGTATGCGCTGCTAATGCGGGAACGGTTCGGTCACATGAGTTTGGAATTTTTAACCGGCTGTTTCTACCTGCTGGACGTTTGGGCTATGTTTTGCTATTACGGCGACGATGAACCGGAGCAGCAGGCCGAGGAGCGTACCGTGCTGAAACAGTTCCGCCAGGCGCTCGCTATGATTGGCGCCGACAATCGGGGGCAGATTTTGGATTACATGCAGCGGTACAAGATAATCGACGGGGAATCGATGGCAGAATGCATCGAAACAATGGAGCAAACGGCTTAATAACGCTTTGTTTTTTTTTTTGTAATTCAAATTTTAATTTCCTTTTCTTTGCTTCACCAACGGTTCGCGCATCGCCGGTGAGTGGTTACATTGTTTTTGTTTCGGGCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2067#0 TCATGCCAAGAATCCGAGGTNATTTAGATCTGGATCCAGATGATCGACGCGACGAAACAC 60
consensus_2067#1 ------------------------------------------------------------
consensus_2067#0 GTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGTGGAAGCAAATATTGATACCACAG 120
consensus_2067#1 ------------------------------------------------------------
consensus_2067#0 GAATCAAACGAGAGCCATATGCGCTGCGGGACATACCTACGAATGTTTCACACGAATAGA 180
consensus_2067#1 ------------------------------------------------------------
consensus_2067#0 ACACACTGCAAGGGATTGGGCCACTACGAACGCGCTACAACCAGCTTAGCGCTCAGAGTA 240
consensus_2067#1 ------------------------------------------------------------
consensus_2067#0 ATNGCGCNTGGCGTGATTGCTGNGGGGAACCTGGTNTCCNGGGCCCACCATTGCAGTANN 300
consensus_2067#1 ---------------------------------------GGCTGCGACCGATGCCG-GGA 20
* * *** *** *
consensus_2067#0 ATGGGGCACTNTCTTTTAAACCGGGCCTGGTATTNNCTTAAACACCTTTGTGCCTTAGGN 360
consensus_2067#1 GGGTGACGCTACGTTCGAGGAGCGTTTCAACATGATCTGCTGT-CCCGCCTGTCGCCGGG 79
* * * ** ** * * ** ** ** ** * **
consensus_2067#0 GAACCGTATATNGNGGGNGCATACAATAGGTATCATCACTGCGTCACTTTTAACCCGTGG 420
consensus_2067#1 AGTACTCGAAGGAGCTGAACCTGGAGGAACTGCCAACAGTGTGTGTGT----ACTGTTCG 135
* * * * * * * * ** ** ** ** * ** * *
consensus_2067#0 GCGGAAACCGAATTATAAAACCCCGNGGTAAGNACAACNAAGAAATAAGACCNGANATGG 480
consensus_2067#1 GCGGAAATTCCCTCCGAAT------GGTTAAGCCAAATTTTGGATCTGGATCC-AGATGA 188
******* * ** * **** ** * * ** * * ***
consensus_2067#0 ANGNGCNAGTTNAAACAC-CAGCTACGTNGGAAGAAAAAAAACATATACCCGGNCGCCAA 539
consensus_2067#1 TCGT-CGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACT--ACGGCAA 245
* * * ****** * ** * * * * * **** * ** ***
consensus_2067#0 GNGAGNGACGGCNCNCCGGANTTACATNCGGCATATTGGGGGNGGCCGCCGCCCNACCAC 599
consensus_2067#1 GCAAATATTGATCCACAGCAATCAAACGAGAGCCATTGC-----GCTGCGGCACATCCTC 300
* * * * * * * * * * * **** ** ** ** * ** *
consensus_2067#0 AANCGATACCACGCGAGNNGC-GCCAGCAGGACAGNAACACACAAGGGGGCACGAGAAAC 658
consensus_2067#1 GAATG-TTTCACACGAATAGCCACCTGCAAGGGATTGGCCCACTCGAACGCGC------- 352
* * * *** *** ** ** *** * * * *** * ** *
consensus_2067#0 CCCCACCANAGGCGCCACAGAGCCGGCGNACACACAACAGGGAACGAACACAACAACACC 718
consensus_2067#1 -TCAACCAGC-------TAGCGCTAGAGTATGCGCTGCT-------AATGCGGGAACGGT 397
* **** ** ** * * * * * * ** * ***
consensus_2067#0 GGCACCAAAGGGGCAGAAAAAACCACAGCGAACAAAGAGGCACCAGGCACACCATAGGCC 778
consensus_2067#1 TCGGTCACATGAGTTTGGAATTTTTAACCGGCTGTTT--CTACCTGCTGGACGTTTGGGC 455
** * * * ** * ** *** * ** * ** *
consensus_2067#0 AACATNCCCGGANAAACAACGCCAAAAACAAGGGANCACANNCAAANAAACCACCGGACA 838
consensus_2067#1 TATGTTTT-GCTATTACGGCGACGATGAACCGGAGCAGCAGGCCGAGGAGC----GTACC 510
* * * ** ** * * * ** ** * * * * * **
consensus_2067#0 GCATCACANACAGACACAACGNCGGCCCAC-ACGGGCAACACACACCACGANGGGTANAA 897
consensus_2067#1 GTGCTG-AAACAGTTCCGCCAGGCGCTCGCTATGATTGGCGCCGACAATCGGGGGCAGAT 569
* * **** * * ** * * * * * * ** * *** * *
consensus_2067#0 ACC--ATCACGAAACAACAANATATCATAAACAANAAATNAACNCCANCACAAAACACAA 955
consensus_2067#1 TTTGGATTAC-ATGCAGCGGTACAAGATAATCGACGGGGAATCGATGGCAGAATGCATCG 628
** ** * ** * * * **** * * * * ** ** **
consensus_2067#0 ACAAGGGAANAAAACAACAAACCCANAANAAAGAAGGCNGAGAAACACGAAGNACAAAAC 1015
consensus_2067#1 A------AACAATGGAGCAAAC---GGCTTAATAACGCTTTGTTTTTTTTTTTGTAATTC 679
* ** ** * ***** ** ** ** * ** *
consensus_2067#0 AAACGA-GACCACCCACACACANCAGCAGCAATAGNGANTAAACACCACNAGAGA-CGAN 1073
consensus_2067#1 AAATTTTAATTTCCTTTTCTTTGCTTCACCAACGGT--TCGCGCATCGCCGGTGAGTGGT 737
*** * ** * * ** *** * ** * * * ** *
consensus_2067#0 CAGACAGNCAAAAGCANAACGAGGAGACGACCNCGACGGGANCAAACAAACCACGAAGGG 1133
consensus_2067#1 TACATTGTTTTTGTTTCGGGCGC------------------------------------- 760
* * *
consensus_2067#0 NAACAACGCGAGNAAGCCCACCAAAAACCGNACCNCGCACGAACAGCAAACCAAAAGGGN 1193
consensus_2067#1 ------------------------------------------------------------
consensus_2067#0 GGANACCCCCAGACAGGAAAANNGACCAGCTAACCCNGAACAACCAAGAGCAACGNCGCA 1253
consensus_2067#1 ------------------------------------------------------------
consensus_2067#0 ACCAAAAGGAGAGTCAAACAAGA 1276
consensus_2067#1 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||