cluster # 2071

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Anopheles gambiae
cluster # 2071 cluster # 2071 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2071#0 length = 685 sequences # 1

consensus_2071#1 length = 668 sequences # 1

consensusID : consensus_2071#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [CCGCACCACCAAAAATGTCATGGAAAAAGACGACGAAACCTCTAATAGTTGCAGTGACGAGGTGACAGACGACTCCAGCTATACAAAACCCAGTAAAGCACAATCAAACGTGGTAATATGTGAGATATGTGGTAAAACAATGCTACCCACCTATTACCAGGGCCATCTGAACGAACACAATGGGCTTAAACCTTTCGCCTGTGTCGCGCCTGGCTGTAGCAAAACGTTTTCCTGTCGGCATGGACTACGCCGCCATAGCTACTATCGACACAGTGGACAAATGTTCCTCTGTCAGGAGTGTGGGAAAGTATACAAATCAAAGCTGGAACTAAGCACACACCGACTGCATGTGCACACGCGCGGCAAAGCATTCGGTTGTGAGGAGTGTGGAAAATCGTTCGTAACTAGATCATATCTAACAACTCATCGGAAAGCACACACGGGCGGACCACAGGTACAGTGTTCGTACTGTCCAAAGATGCTGTACAGTAAAAAGGGATTAAAACATCACGAGCTGCTGCATACGAATGAGCAGCTATTTGCATGTGCGAAATGTTCTAGTAAGTTTAGCACCAAACGGCAATTGGATGGTCACGTACAGCGAGGATGCGCAAACAGGGGGAGTGAGCATTCAGCAAACATTCAGCATCAGGAGCGATAGTATGGATAAAAGCACGCGAAACAC]

[+] EMBL BM587754             [CCGCACCACCAAAAATGTCATGGAAAAAGACGACGAAACCTCTAATAGTTGCAGTGACGAGGTGACAGACGACTCCAGCTATACAAAACCCAGTAAAGCACAATCAAACGTGGTAATATGTGAGATATGTGGTAAAACAATGCTACCCACCTATTACCAGGGCCATCTGAACGAACACAATGGGCTTAAACCTTTCGCCTGTGTCGCGCCTGGCTGTAGCAAAACGTTTTCCTGTCGGCATGGACTACGCCGCCATAGCTACTATCGACACAGTGGACAAATGTTCCTCTGTCAGGAGTGTGGGAAAGTATACAAATCAAAGCTGGAACTAAGCACACACCGACTGCATGTGCACACGCGCGGCAAAGCATTCGGTTGTGAGGAGTGTGGAAAATCGTTCGTAACTAGATCATATCTAACAACTCATCGGAAAGCACACACGGGCGGACCACAGGTACAGTGTTCGTACTGTCCAAAGATGCTGTACAGTAAAAAGGGATTAAAACATCACGAGCTGCTGCATACGAATGAGCAGCTATTTGCATGTGCGAAATGTTCTAGTAAGTTTAGCACCAAACGGCAATTGGATGGTCACGTACAGCGAGGATGCGCAAACAGGGGGAGTGAGCATTCAGCAAACATTCAGCATCAGGAGCGATAGTATGGATAAAAGCACGCGAAACAC]




>consensus_2071#0
CCGCACCACCAAAAATGTCATGGAAAAAGACGACGAAACCTCTAATAGTTGCAGTGACGA
GGTGACAGACGACTCCAGCTATACAAAACCCAGTAAAGCACAATCAAACGTGGTAATATG
TGAGATATGTGGTAAAACAATGCTACCCACCTATTACCAGGGCCATCTGAACGAACACAA
TGGGCTTAAACCTTTCGCCTGTGTCGCGCCTGGCTGTAGCAAAACGTTTTCCTGTCGGCA
TGGACTACGCCGCCATAGCTACTATCGACACAGTGGACAAATGTTCCTCTGTCAGGAGTG
TGGGAAAGTATACAAATCAAAGCTGGAACTAAGCACACACCGACTGCATGTGCACACGCG
CGGCAAAGCATTCGGTTGTGAGGAGTGTGGAAAATCGTTCGTAACTAGATCATATCTAAC
AACTCATCGGAAAGCACACACGGGCGGACCACAGGTACAGTGTTCGTACTGTCCAAAGAT
GCTGTACAGTAAAAAGGGATTAAAACATCACGAGCTGCTGCATACGAATGAGCAGCTATT
TGCATGTGCGAAATGTTCTAGTAAGTTTAGCACCAAACGGCAATTGGATGGTCACGTACA
GCGAGGATGCGCAAACAGGGGGAGTGAGCATTCAGCAAACATTCAGCATCAGGAGCGATA
GTATGGATAAAAGCACGCGAAACAC

consensusID : consensus_2071#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [CCGAAACAAACCGGCGCAGTTTTACCCGGGCCGGGAAAACTCTCATCAAAAGTCTTGAAAATGAACAATTTTTCAACTGTTTGTCGATTGTGCTTTAATCCCACCGCTTCAAACGTTGAGGACGATCAGATTTATCAGCAAATAAACCTTTGCCTTGGTTTGGTTATAAATCCAACGAATAAATCATGGCCATGTCGTATCTGCGGCAGCTGTGCTGAAAAGGTGAAAGAATTTCACAAATATCGTGAATTGTGTTGGGATGTACATAATATGTTGCTGAATGTGTTGAACGGCGAAAATACGGTGGATACACAGAATGGAAAATCCACCATCAAAAAAGTCATGAAAAAAGACAACGAAACCACGAATAGTTGCAGTGATGAAGTAACAGACGACTCCTGTGATACAAAAGCGCAAGCGGAGCCCAGCAAAGCACAATCAAACGTGGTAATATGTGAGATATGTGGTAAAACAATGCTACCCACCTACTACCAGGGCCATCTGAACGAACACAATGGGCTTAAACCTTTCGCCTGTGTCGCGCCTGGCTGTAGCAAAATGTTTTCCTGTCGGCATGGACTACGCCGCCATAGCTACTATCGGCACAGTGGACAAATGTTCCTCTGTCAGGATTGTGGAAAAGCATACAAATCAAAGCTGGAACTAAG]

[+] EMBL BM582727             [CCGAAACAAACCGGCGCAGTTTTACCCGGGCCGGGAAAACTCTCATCAAAAGTCTTGAAAATGAACAATTTTTCAACTGTTTGTCGATTGTGCTTTAATCCCACCGCTTCAAACGTTGAGGACGATCAGATTTATCAGCAAATAAACCTTTGCCTTGGTTTGGTTATAAATCCAACGAATAAATCATGGCCATGTCGTATCTGCGGCAGCTGTGCTGAAAAGGTGAAAGAATTTCACAAATATCGTGAATTGTGTTGGGATGTACATAATATGTTGCTGAATGTGTTGAACGGCGAAAATACGGTGGATACACAGAATGGAAAATCCACCATCAAAAAAGTCATGAAAAAAGACAACGAAACCACGAATAGTTGCAGTGATGAAGTAACAGACGACTCCTGTGATACAAAAGCGCAAGCGGAGCCCAGCAAAGCACAATCAAACGTGGTAATATGTGAGATATGTGGTAAAACAATGCTACCCACCTACTACCAGGGCCATCTGAACGAACACAATGGGCTTAAACCTTTCGCCTGTGTCGCGCCTGGCTGTAGCAAAATGTTTTCCTGTCGGCATGGACTACGCCGCCATAGCTACTATCGGCACAGTGGACAAATGTTCCTCTGTCAGGATTGTGGAAAAGCATACAAATCAAAGCTGGAACTAAG]




>consensus_2071#1
CCGAAACAAACCGGCGCAGTTTTACCCGGGCCGGGAAAACTCTCATCAAAAGTCTTGAAA
ATGAACAATTTTTCAACTGTTTGTCGATTGTGCTTTAATCCCACCGCTTCAAACGTTGAG
GACGATCAGATTTATCAGCAAATAAACCTTTGCCTTGGTTTGGTTATAAATCCAACGAAT
AAATCATGGCCATGTCGTATCTGCGGCAGCTGTGCTGAAAAGGTGAAAGAATTTCACAAA
TATCGTGAATTGTGTTGGGATGTACATAATATGTTGCTGAATGTGTTGAACGGCGAAAAT
ACGGTGGATACACAGAATGGAAAATCCACCATCAAAAAAGTCATGAAAAAAGACAACGAA
ACCACGAATAGTTGCAGTGATGAAGTAACAGACGACTCCTGTGATACAAAAGCGCAAGCG
GAGCCCAGCAAAGCACAATCAAACGTGGTAATATGTGAGATATGTGGTAAAACAATGCTA
CCCACCTACTACCAGGGCCATCTGAACGAACACAATGGGCTTAAACCTTTCGCCTGTGTC
GCGCCTGGCTGTAGCAAAATGTTTTCCTGTCGGCATGGACTACGCCGCCATAGCTACTAT
CGGCACAGTGGACAAATGTTCCTCTGTCAGGATTGTGGAAAAGCATACAAATCAAAGCTG
GAACTAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2071#0      CCGCACCACCAAAAATGTCATGGAAAAAGACGACGAAACCTCTAATAGTTGCAGTGACGA 60
consensus_2071#1      --------------------------------CCGAAAC---AAACCGGCGCAGTTTTAC 25
                                                       ******    **  *  *****     

consensus_2071#0      GGTGACAGACGACTCCAGCTATACAAAACCCAGTAAAGCACAATCAAACGTGGTAATATG 120
consensus_2071#1      CCGGGCCGGGAAAACTCTCATCAAAAGTCTTGAAAATGAACAATTT--TTCAACTGTTTG 83
                         * * *   *  *   *   * **  *     ** * *****            * **

consensus_2071#0      TGAGATATGTGGTAAAACAATGCTACCCACCTATTACCAGGGCCATCTGAACGAACACAA 180
consensus_2071#1      TCGATTGTGCTTTAATCCCAC-CGCTTCAAACGTTG--AGGACGATCAGATTTATCA--- 137
                      *    * **   ***  * *  *    **    **   *** * *** **   * **   

consensus_2071#0      TGGGCTTAAACCTTTCGCCTGTGTCGCGCCTGGCTGTAGCAAAACGTTTTCCTGTCGGCA 240
consensus_2071#1      -GCAAATAAACCTTTGCCTTGGTTTGGTTATAAATCCAACGAATAAATC----ATGGCCA 192
                       *    *********  * **  * *    *   *  * * **    *      * * **

consensus_2071#0      TGGACTACGCCGCCATAGCTACTATCGACACAGTGGACAAATGTTCCT----CTGTCAGG 296
consensus_2071#1      TGTCGTAT-CTGCGGCAGCTG-TGCTGAAAAGGTGAAAGAATTTCACAAATATCGTGAAT 250
                      **   **  * **   ****  *   ** *  *** *  *** *  *       ** *  

consensus_2071#0      AGTGTGGGAAAGTATACAAATCAAAGCTGGAACTAAGCACACACCGACTGCATG-TGCAC 355
consensus_2071#1      TGTGTTGGGATGTACATAATATGTTGCTGAATGTGT-TGAACGGCGAAAATACGGTGGAT 309
                       **** ** * *** * **      **** *  *      **  ***    * * ** * 

consensus_2071#0      ACGCGCGGCAAAGCATTCG--GTTGTGAGGAGTGTGGAAAATCGTT-CGTAACTA--GAT 410
consensus_2071#1      ACACAGAATGGAAAATCCACCATCAAAAAAGTCATGAAAAAAGACAACGAAACCACGAAT 369
                      ** *       *  ** *    *    *      ** ****      ** *** *   **

consensus_2071#0      CATATC--TAACAACTCATCGGAAAGCACACACGGGCGGACCACAGGTACAGTGTTC--- 465
consensus_2071#1      AGTTGCAGTGATGAAGTAACAGACGACTCCTGTGATACAAAAGCGCAAGCGGAGCCCAGC 429
                        *  *  * *  *   * * **   * *    *     *   *     * * *  *   

consensus_2071#0      ---GTACTGTCCAAAGATGCTGTACAGTAAAAAGGGATTAAAACATCACGAGCTGCTGCA 522
consensus_2071#1      AAAGCACAATCAAACGTGGTAATATGTGAGATATGTGGTAAAACAATGCTACCCACCTAC 489
                         * **  ** ** *  *   **    * * * *   *******   * * *  *    

consensus_2071#0      TACGAATG--AGC--AGCTATTTGCATGTGCGAAATGTTCTAGTAAGTTTAGCACCAAAC 578
consensus_2071#1      TACCAGGGCCATCTGAACGAACACAATGGGCTTAAACCTTTCGCCTGTGTCGCGCCTGGC 549
                      *** *  *  * *  * * *     *** **  **   * * *   ** * ** **   *

consensus_2071#0      GGCAATTGGATGGTCACGTA-CAGCGAGGA-TGCGCAAACAGGGGGAGT----GAGCATT 632
consensus_2071#1      TGTAGCAAAATGTTTTCCTGTCGGCATGGACTACGCCGCCATAGCTACTATCGGCACAGT 609
                       * *     *** *  * *  * **  *** * ***   **  *  * *    *  ** *

consensus_2071#0      CAGCAAACATTCAGC-ATCAGGAGCGATAGTATGGATA-AAAGCACGCGAAACAC---- 685
consensus_2071#1      GGACAAATGTTCCTCTGTCAGGATTGTGGAAAAGCATACAAATCAAAGCTGGAACTAAG 668
                         ****  ***  *  ******  *     * * *** *** **        **