cluster # 2073

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Anopheles gambiae
cluster # 2073 cluster # 2073 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2073#0 length = 769 sequences # 1

consensus_2073#1 length = 201 sequences # 1

consensusID : consensus_2073#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 769
fasta sequence

                              [NCCCGAGGTTAATTTTTATATTANNATNATTTATGTCGCCATCGGCACCTATCCTTCGGTATGATCGGGAACGGTGGAAGGTTCGGCCTGCCTATATCGTACAGTGGTTTCCGTATATACCATACGCTTCCTATGGCGCTTATACAGTACGCTTACTGTCGATGTGTCCATACCTATTCCATTTCGCTACACCTGCTCAGCGACAGTTGCTTCGTCCGGCTTATTGCTTCTATGTTGGGAATAAATGCTGACAGGCAGGTAGACTCTCTTCTAAATCGACAAATGGCCCATCATCCGTTTTGGTTCCGACCGGAAAGCAGGCCAGCCACCTAGTGACATTGGAGTCAACGGTATTCCTTTCGCTTCGGGTTTGTGTCCTTCTTTCAAATTTCGGCCTTCTAGCTAGCTTTGGCTAGGTTCCGGGGGCAGGGTTGGCGTCAGGCCGGGAGCCATTCTTTCCTGGCNATTCCGCCCATATGCTGCCCGGGACGACCGTGGTACTTCGGCGGACCCGGCGGGTTAACCGGGCGGTCAACCCGGGTTTCCCGTCNNTTNNGNATCCACTTTCGGCGGCTATGTCNCGTATTGCCACGCTTTTAACCGGGAGCCTTGCGCCGTCCANCCGTGACCATCCACACAGCCTGCCTATTGGGTCTTACCACGCTTTTGAACCGCTCTTACTTGGTCCTACCCGCGCGCTCCGGCCTGCGGCTGTTAGCCAGCCGTTCCGTCCTACGTTCGCGCGCTTTTGGCGGCATTGATTCTCTCG]

[+] EMBL AL695573             [NCCCGAGGTTAATTTTTATATTANNATNATTTATGTCGCCATCGGCACCTATCCTTCGGTATGATCGGGAACGGTGGAAGGTTCGGCCTGCCTATATCGTACAGTGGTTTCCGTATATACCATACGCTTCCTATGGCGCTTATACAGTACGCTTACTGTCGATGTGTCCATACCTATTCCATTTCGCTACACCTGCTCAGCGACAGTTGCTTCGTCCGGCTTATTGCTTCTATGTTGGGAATAAATGCTGACAGGCAGGTAGACTCTCTTCTAAATCGACAAATGGCCCATCATCCGTTTTGGTTCCGACCGGAAAGCAGGCCAGCCACCTAGTGACATTGGAGTCAACGGTATTCCTTTCGCTTCGGGTTTGTGTCCTTCTTTCAAATTTCGGCCTTCTAGCTAGCTTTGGCTAGGTTCCGGGGGCAGGGTTGGCGTCAGGCCGGGAGCCATTCTTTCCTGGCNATTCCGCCCATATGCTGCCCGGGACGACCGTGGTACTTCGGCGGACCCGGCGGGTTAACCGGGCGGTCAACCCGGGTTTCCCGTCNNTTNNGNATCCACTTTCGGCGGCTATGTCNCGTATTGCCACGCTTTTAACCGGGAGCCTTGCGCCGTCCANCCGTGACCATCCACACAGCCTGCCTATTGGGTCTTACCACGCTTTTGAACCGCTCTTACTTGGTCCTACCCGCGCGCTCCGGCCTGCGGCTGTTAGCCAGCCGTTCCGTCCTACGTTCGCGCGCTTTTGGCGGCATTGATTCTCTCG]




>consensus_2073#0
NCCCGAGGTTAATTTTTATATTANNATNATTTATGTCGCCATCGGCACCTATCCTTCGGT
ATGATCGGGAACGGTGGAAGGTTCGGCCTGCCTATATCGTACAGTGGTTTCCGTATATAC
CATACGCTTCCTATGGCGCTTATACAGTACGCTTACTGTCGATGTGTCCATACCTATTCC
ATTTCGCTACACCTGCTCAGCGACAGTTGCTTCGTCCGGCTTATTGCTTCTATGTTGGGA
ATAAATGCTGACAGGCAGGTAGACTCTCTTCTAAATCGACAAATGGCCCATCATCCGTTT
TGGTTCCGACCGGAAAGCAGGCCAGCCACCTAGTGACATTGGAGTCAACGGTATTCCTTT
CGCTTCGGGTTTGTGTCCTTCTTTCAAATTTCGGCCTTCTAGCTAGCTTTGGCTAGGTTC
CGGGGGCAGGGTTGGCGTCAGGCCGGGAGCCATTCTTTCCTGGCNATTCCGCCCATATGC
TGCCCGGGACGACCGTGGTACTTCGGCGGACCCGGCGGGTTAACCGGGCGGTCAACCCGG
GTTTCCCGTCNNTTNNGNATCCACTTTCGGCGGCTATGTCNCGTATTGCCACGCTTTTAA
CCGGGAGCCTTGCGCCGTCCANCCGTGACCATCCACACAGCCTGCCTATTGGGTCTTACC
ACGCTTTTGAACCGCTCTTACTTGGTCCTACCCGCGCGCTCCGGCCTGCGGCTGTTAGCC
AGCCGTTCCGTCCTACGTTCGCGCGCTTTTGGCGGCATTGATTCTCTCG

consensusID : consensus_2073#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [GGTTTCCGTTTCCATCGCTTCCTGGGCGCTTTCAGTCGCTTCTGTCGATGTGTCCATCCTTTCCATTTTGCTCACCTGCTCAGCGACAGTTGCTTCGTCCGGCTTTTGCTTCTTGTTGGGAATAATGCTGACAGGCAGTAGACTCTCTTCTAAATCGACAATGCCATCATCCGTTTGGTCGACGGAAGCAGCAGCACTAGT]

[-] EMBL BX614420             [GGTTTCCGTTTCCATCGCTTCCTGGGCGCTTTCAGTCGCTTCTGTCGATGTGTCCATCCTTTCCATTTTGCTCACCTGCTCAGCGACAGTTGCTTCGTCCGGCTTTTGCTTCTTGTTGGGAATAATGCTGACAGGCAGTAGACTCTCTTCTAAATCGACAATGCCATCATCCGTTTGGTCGACGGAAGCAGCAGCACTAGT]




>consensus_2073#1
GGTTTCCGTTTCCATCGCTTCCTGGGCGCTTTCAGTCGCTTCTGTCGATGTGTCCATCCT
TTCCATTTTGCTCACCTGCTCAGCGACAGTTGCTTCGTCCGGCTTTTGCTTCTTGTTGGG
AATAATGCTGACAGGCAGTAGACTCTCTTCTAAATCGACAATGCCATCATCCGTTTGGTC
GACGGAAGCAGCAGCACTAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2073#0      NCCCGAGGTTAATTTTTATATTANNATNATTTATGTCGCCATCGGCACCTATCCTTCGGT 60
consensus_2073#1      ------------------------------------------------------------
                                                                                  

consensus_2073#0      ATGATCGGGAACGGTGGAAGGTTCGGCCTGCCTATATCGTACAGTGGTTTCCGTATATAC 120
consensus_2073#1      ---------------------------------------------GGTTTCCGT---TTC 12
                                                                   *********   * *

consensus_2073#0      CATACGCTTCCTATGGCGCTTATACAGTACGCTTACTGTCGATGTGTCCATACCTATTCC 180
consensus_2073#1      CAT-CGCTTCCTG-GGCGCTTT--CAGT-CGCTT-CTGTCGATGTGTCCATCCTT--TCC 64
                      *** ********  *******   **** ***** **************** * *  ***

consensus_2073#0      ATTTCGCTACACCTGCTCAGCGACAGTTGCTTCGTCCGGCTTATTGCTTCTATGTTGGGA 240
consensus_2073#1      ATTTTGCT-CACCTGCTCAGCGACAGTTGCTTCGTCCGGCTT-TTGCTTCT-TGTTGGGA 121
                      **** *** ********************************* ******** ********

consensus_2073#0      ATAAATGCTGACAGGCAGGTAGACTCTCTTCTAAATCGACAAATGGCCCATCATCCGTTT 300
consensus_2073#1      ATAA-TGCTGACAGGCAG-TAGACTCTCTTCTAAATCGACAA-TG--CCATCATCCGTTT 176
                      **** ************* *********************** **  *************

consensus_2073#0      TGGTTCCGACCGGAAAGCAGGCCAGCCACCTAGTGACATTGGAGTCAACGGTATTCCTTT 360
consensus_2073#1      GG---TCGAC--GGAAGCAG--CAGCA--CTAGT-------------------------- 201
                       *    ****  * ******  ****   *****                          

consensus_2073#0      CGCTTCGGGTTTGTGTCCTTCTTTCAAATTTCGGCCTTCTAGCTAGCTTTGGCTAGGTTC 420
consensus_2073#1      ------------------------------------------------------------
                                                                                  

consensus_2073#0      CGGGGGCAGGGTTGGCGTCAGGCCGGGAGCCATTCTTTCCTGGCNATTCCGCCCATATGC 480
consensus_2073#1      ------------------------------------------------------------
                                                                                  

consensus_2073#0      TGCCCGGGACGACCGTGGTACTTCGGCGGACCCGGCGGGTTAACCGGGCGGTCAACCCGG 540
consensus_2073#1      ------------------------------------------------------------
                                                                                  

consensus_2073#0      GTTTCCCGTCNNTTNNGNATCCACTTTCGGCGGCTATGTCNCGTATTGCCACGCTTTTAA 600
consensus_2073#1      ------------------------------------------------------------
                                                                                  

consensus_2073#0      CCGGGAGCCTTGCGCCGTCCANCCGTGACCATCCACACAGCCTGCCTATTGGGTCTTACC 660
consensus_2073#1      ------------------------------------------------------------
                                                                                  

consensus_2073#0      ACGCTTTTGAACCGCTCTTACTTGGTCCTACCCGCGCGCTCCGGCCTGCGGCTGTTAGCC 720
consensus_2073#1      ------------------------------------------------------------
                                                                                  

consensus_2073#0      AGCCGTTCCGTCCTACGTTCGCGCGCTTTTGGCGGCATTGATTCTCTCG 769
consensus_2073#1      -------------------------------------------------