cluster # 2085

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Anopheles gambiae
cluster # 2085 cluster # 2085 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2085#0 length = 664 sequences # 1

consensus_2085#1 length = 370 sequences # 1

consensusID : consensus_2085#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [TGCAAGAATTGCCCGAGGNTAGACAGGTGTGTTGGCCAAGCTTCGGGCACAGTACACGCAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAACGGGAGCGAGCGTATGCATTCAGCTGGCGCCTGTTTCAGTATTACCACTTCGAGGCGGACAAAGACTTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTTGCCCGATTGCAACAGAATTTGCCAACNTTAAAANACGCTGGAAGGCGAACGTTAANAGGCGAACTNGCCTGGGGAAGAACCTTTGCAAGAATGGAGGGCTGGGGATCTATCCGAGGGATGATTGTTGCAAATACGTTTCAGGACCTTGGGACCTGGCTAGTTACTGGGGTATCCGGCGGGAACGCAGTACAAAACAAATACACACCAGAGCAGNCTTTCCGTTAACCGCAATGTCCGGGACACGCAAGGAAGTTGTTCAAAGGTTACGCCTTAACCGGAGNTTAACAANATTGCCGACCCTTATAAAGGCGTTAACTTTGGCCAAGGCCGGGCCTAGGAGGGCCCCGGNAAGTTACCTGAAGGCCATTTTATAACCANTTGAACTCGGGCCGCATCACATATACATAGCGCNGAATGACGGCATATCCGCACGAAGCG]

[+] EMBL AL695664             [TGCAAGAATTGCCCGAGGNTAGACAGGTGTGTTGGCCAAGCTTCGGGCACAGTACACGCAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAACGGGAGCGAGCGTATGCATTCAGCTGGCGCCTGTTTCAGTATTACCACTTCGAGGCGGACAAAGACTTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTTGCCCGATTGCAACAGAATTTGCCAACNTTAAAANACGCTGGAAGGCGAACGTTAANAGGCGAACTNGCCTGGGGAAGAACCTTTGCAAGAATGGAGGGCTGGGGATCTATCCGAGGGATGATTGTTGCAAATACGTTTCAGGACCTTGGGACCTGGCTAGTTACTGGGGTATCCGGCGGGAACGCAGTACAAAACAAATACACACCAGAGCAGNCTTTCCGTTAACCGCAATGTCCGGGACACGCAAGGAAGTTGTTCAAAGGTTACGCCTTAACCGGAGNTTAACAANATTGCCGACCCTTATAAAGGCGTTAACTTTGGCCAAGGCCGGGCCTAGGAGGGCCCCGGNAAGTTACCTGAAGGCCATTTTATAACCANTTGAACTCGGGCCGCATCACATATACATAGCGCNGAATGACGGCATATCCGCACGAAGCG]




>consensus_2085#0
TGCAAGAATTGCCCGAGGNTAGACAGGTGTGTTGGCCAAGCTTCGGGCACAGTACACGCA
AAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAAC
GGGAGCGAGCGTATGCATTCAGCTGGCGCCTGTTTCAGTATTACCACTTCGAGGCGGACA
AAGACTTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTTGCCCGATTGCAACA
GAATTTGCCAACNTTAAAANACGCTGGAAGGCGAACGTTAANAGGCGAACTNGCCTGGGG
AAGAACCTTTGCAAGAATGGAGGGCTGGGGATCTATCCGAGGGATGATTGTTGCAAATAC
GTTTCAGGACCTTGGGACCTGGCTAGTTACTGGGGTATCCGGCGGGAACGCAGTACAAAA
CAAATACACACCAGAGCAGNCTTTCCGTTAACCGCAATGTCCGGGACACGCAAGGAAGTT
GTTCAAAGGTTACGCCTTAACCGGAGNTTAACAANATTGCCGACCCTTATAAAGGCGTTA
ACTTTGGCCAAGGCCGGGCCTAGGAGGGCCCCGGNAAGTTACCTGAAGGCCATTTTATAA
CCANTTGAACTCGGGCCGCATCACATATACATAGCGCNGAATGACGGCATATCCGCACGA
AGCG

consensusID : consensus_2085#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [CACCCAACGTAGTGTTAAAATATTAGCTTTTTGTGTAACCCTTCGGCTATTGTAGATTTTAAGAAACATCGACACACAAGGACCCGATGGAATCGATATGGGAAAACATCAGCACCGCGCTGGAACTGGCGCCCGACACAGCGGACAGGTGGTTGGCCAAGCTTCGGGCACAGTACACGCAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAACGGGAGCGAGCGTATGCATTCAGCTGGCCGCCCTGTTTCAGTATTACCACTTCGAGGCGGACAAAGACTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTGCCGATGCACAGATTGAAAATAA]

[+] EMBL BX618700             [CACCCAACGTAGTGTTAAAATATTAGCTTTTTGTGTAACCCTTCGGCTATTGTAGATTTTAAGAAACATCGACACACAAGGACCCGATGGAATCGATATGGGAAAACATCAGCACCGCGCTGGAACTGGCGCCCGACACAGCGGACAGGTGGTTGGCCAAGCTTCGGGCACAGTACACGCAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAACGGGAGCGAGCGTATGCATTCAGCTGGCCGCCCTGTTTCAGTATTACCACTTCGAGGCGGACAAAGACTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTGCCGATGCACAGATTGAAAATAA]




>consensus_2085#1
CACCCAACGTAGTGTTAAAATATTAGCTTTTTGTGTAACCCTTCGGCTATTGTAGATTTT
AAGAAACATCGACACACAAGGACCCGATGGAATCGATATGGGAAAACATCAGCACCGCGC
TGGAACTGGCGCCCGACACAGCGGACAGGTGGTTGGCCAAGCTTCGGGCACAGTACACGC
AAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTAA
CGGGAGCGAGCGTATGCATTCAGCTGGCCGCCCTGTTTCAGTATTACCACTTCGAGGCGG
ACAAAGACTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTGCCGATGCACAGA
TTGAAAATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2085#0      ------------------------------------------------------------
consensus_2085#1      CACCCAACGTAGTGTTAAAATATTAGCTTTTTGTGTAACCCTTCGGCTATTGTAGATTTT 60
                                                                                  

consensus_2085#0      ------------------------------------------------------------
consensus_2085#1      AAGAAACATCGACACACAAGGACCCGATGGAATCGATATGGGAAAACATCAGCACCGCGC 120
                                                                                  

consensus_2085#0      TGCAAGAATTGCCCGAGGN--TAGACAGGTGTGTTGGCCAAGCTTCGGGCACAGTACACG 58
consensus_2085#1      TGGAACTGGCGCCCGACACAGCGGACAGGTG-GTTGGCCAAGCTTCGGGCACAGTACACG 179
                      ** **     ******       ******** ****************************

consensus_2085#0      CAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTA 118
consensus_2085#1      CAAAGCCATCGCCACTACCACACGGAGTCGGAGCTGATCCGTCGAAAGGTTCCCCATCTA 239
                      ************************************************************

consensus_2085#0      ACGGGAGCGAGCGTATGCATTCAGCTGGCG--CCTGTTTCAGTATTACCACTTCGAGGCG 176
consensus_2085#1      ACGGGAGCGAGCGTATGCATTCAGCTGGCCGCCCTGTTTCAGTATTACCACTTCGAGGCG 299
                      *****************************   ****************************

consensus_2085#0      GACAAAGACTTGTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTTGCCCGATTGC 236
consensus_2085#1      GACAAAGACT-GTGTCGCACGGAACTGTGAGACAGTGGGTGAATTCTTTG--CCGAT--- 353
                      ********** **************************************   *****   

consensus_2085#0      AACAGAATTTGCCAACNTTAAAANACGCTGGAAGGCGAACGTTAANAGGCGAACTNGCCT 296
consensus_2085#1      -GCACAGATTGAAAATAA------------------------------------------ 370
                        ** *  ***  **                                             

consensus_2085#0      GGGGAAGAACCTTTGCAAGAATGGAGGGCTGGGGATCTATCCGAGGGATGATTGTTGCAA 356
consensus_2085#1      ------------------------------------------------------------
                                                                                  

consensus_2085#0      ATACGTTTCAGGACCTTGGGACCTGGCTAGTTACTGGGGTATCCGGCGGGAACGCAGTAC 416
consensus_2085#1      ------------------------------------------------------------
                                                                                  

consensus_2085#0      AAAACAAATACACACCAGAGCAGNCTTTCCGTTAACCGCAATGTCCGGGACACGCAAGGA 476
consensus_2085#1      ------------------------------------------------------------
                                                                                  

consensus_2085#0      AGTTGTTCAAAGGTTACGCCTTAACCGGAGNTTAACAANATTGCCGACCCTTATAAAGGC 536
consensus_2085#1      ------------------------------------------------------------
                                                                                  

consensus_2085#0      GTTAACTTTGGCCAAGGCCGGGCCTAGGAGGGCCCCGGNAAGTTACCTGAAGGCCATTTT 596
consensus_2085#1      ------------------------------------------------------------
                                                                                  

consensus_2085#0      ATAACCANTTGAACTCGGGCCGCATCACATATACATAGCGCNGAATGACGGCATATCCGC 656
consensus_2085#1      ------------------------------------------------------------
                                                                                  

consensus_2085#0      ACGAAGCG 664
consensus_2085#1      --------