cluster # 213

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Anopheles gambiae
cluster # 213 cluster # 213 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_213#0 length = 873 sequences # 1

consensus_213#1 length = 690 sequences # 1

consensusID : consensus_213#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 873
fasta sequence

                              [GCAGAATCCCCACGAGGAGATTCGCTCGTGGTAGTCACCGTCATTCTCGTGCGCGATCTAGAAAACCGTGAGGAAGACCTACTGAACTTCAGCACCGAACGAGTTACTCTAGAACTGCAACAATGTCGGAACGCGAAAATAACATCTACAAGGCGAAGCTGGCCGAACAGGCTGAGCGATACGATGAAATGGTCGAAGCCATGAAGAAGGTCGCCTCCATGGATGTGGAGCTGACGGTGGAGGAAAGAAATCTCCTGTCGGTGGCTTACAAAAACGTCATCGGTGCACGTCGTGCTTCTTGGCGGATAATCTCTTCGATAGAGCAGAAGGAAGAGAACAAGGGAGTGGAGGAGAAGCTGGAAATGATCAAGAACTACCGCTCACAGGTTGAGAAGGAACTGCGCGACATCTGCTCAGACATTCTCGAGGTGCTTGATAAGCATCTGATCCCGTGTGCAACGACCGGTGAAAGCAAGGTGTTTTACTACAAGATGAAGGGCGATTATCACCGCTATCTGGCTGAGTTTGCCACCGGTGGTGATCGTAAGGATGCCGCCGAGAAATTCGGCTCGTCGCGTACAAGGGCGTGCCAAGGTGAATAATCGCGAATGACTTGACCCTTTCCAGCCAAACGGCACCCCAATTTCGATTGGGGATTNGGGCTTTTGAACTTTCTCCAGTAATTTTACTTCATGAAAGTCCTGAACTCTCCGGGATCGTGCCTTGGACCGTCTAGACGNAAAGGCGGGAATTCGGACGGATTGGCCTATTTGGGCGNAACCTGGATANTCCTGGAGCCGAAGGAACAGGCTTCACAGAGGAATTNCAAGGGGCNTGAAGTATTGCAGGGTTGCATTCGGGGGACGAAACGTG]

[+] EMBL BX467684             [GCAGAATCCCCACGAGGAGATTCGCTCGTGGTAGTCACCGTCATTCTCGTGCGCGATCTAGAAAACCGTGAGGAAGACCTACTGAACTTCAGCACCGAACGAGTTACTCTAGAACTGCAACAATGTCGGAACGCGAAAATAACATCTACAAGGCGAAGCTGGCCGAACAGGCTGAGCGATACGATGAAATGGTCGAAGCCATGAAGAAGGTCGCCTCCATGGATGTGGAGCTGACGGTGGAGGAAAGAAATCTCCTGTCGGTGGCTTACAAAAACGTCATCGGTGCACGTCGTGCTTCTTGGCGGATAATCTCTTCGATAGAGCAGAAGGAAGAGAACAAGGGAGTGGAGGAGAAGCTGGAAATGATCAAGAACTACCGCTCACAGGTTGAGAAGGAACTGCGCGACATCTGCTCAGACATTCTCGAGGTGCTTGATAAGCATCTGATCCCGTGTGCAACGACCGGTGAAAGCAAGGTGTTTTACTACAAGATGAAGGGCGATTATCACCGCTATCTGGCTGAGTTTGCCACCGGTGGTGATCGTAAGGATGCCGCCGAGAAATTCGGCTCGTCGCGTACAAGGGCGTGCCAAGGTGAATAATCGCGAATGACTTGACCCTTTCCAGCCAAACGGCACCCCAATTTCGATTGGGGATTNGGGCTTTTGAACTTTCTCCAGTAATTTTACTTCATGAAAGTCCTGAACTCTCCGGGATCGTGCCTTGGACCGTCTAGACGNAAAGGCGGGAATTCGGACGGATTGGCCTATTTGGGCGNAACCTGGATANTCCTGGAGCCGAAGGAACAGGCTTCACAGAGGAATTNCAAGGGGCNTGAAGTATTGCAGGGTTGCATTCGGGGGACGAAACGTG]




>consensus_213#0
GCAGAATCCCCACGAGGAGATTCGCTCGTGGTAGTCACCGTCATTCTCGTGCGCGATCTA
GAAAACCGTGAGGAAGACCTACTGAACTTCAGCACCGAACGAGTTACTCTAGAACTGCAA
CAATGTCGGAACGCGAAAATAACATCTACAAGGCGAAGCTGGCCGAACAGGCTGAGCGAT
ACGATGAAATGGTCGAAGCCATGAAGAAGGTCGCCTCCATGGATGTGGAGCTGACGGTGG
AGGAAAGAAATCTCCTGTCGGTGGCTTACAAAAACGTCATCGGTGCACGTCGTGCTTCTT
GGCGGATAATCTCTTCGATAGAGCAGAAGGAAGAGAACAAGGGAGTGGAGGAGAAGCTGG
AAATGATCAAGAACTACCGCTCACAGGTTGAGAAGGAACTGCGCGACATCTGCTCAGACA
TTCTCGAGGTGCTTGATAAGCATCTGATCCCGTGTGCAACGACCGGTGAAAGCAAGGTGT
TTTACTACAAGATGAAGGGCGATTATCACCGCTATCTGGCTGAGTTTGCCACCGGTGGTG
ATCGTAAGGATGCCGCCGAGAAATTCGGCTCGTCGCGTACAAGGGCGTGCCAAGGTGAAT
AATCGCGAATGACTTGACCCTTTCCAGCCAAACGGCACCCCAATTTCGATTGGGGATTNG
GGCTTTTGAACTTTCTCCAGTAATTTTACTTCATGAAAGTCCTGAACTCTCCGGGATCGT
GCCTTGGACCGTCTAGACGNAAAGGCGGGAATTCGGACGGATTGGCCTATTTGGGCGNAA
CCTGGATANTCCTGGAGCCGAAGGAACAGGCTTCACAGAGGAATTNCAAGGGGCNTGAAG
TATTGCAGGGTTGCATTCGGGGGACGAAACGTG

consensusID : consensus_213#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [GGCCGAGAATAATTTTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTTGTAATAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTTTCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCAATTGGGAGACGCTACCTACCTTCGGGCGGTCTGCACAACGATGTGGCCCTACTGTTCCTTAACGCGCCCGTCGAACCGAACGAAAGCATCCAGACGGTGTGTCTGCCCCCGCAGGACATGGCGTTCAACCACGAGACGTGCTTTGCCAGCGGCTGGGGCAAGGACGTGTTCGGTAAGGCCGGCACGTACCAGGTCATCCTGAAGAAGATTGATCTGCCGGTCGTGCCGAACGATCAGTGCCAGACGGCGCTGCGCACCACGCGCCTCGGGCCCAAGTTTAACCTGCACAAGAGCTTCATCTGTGCGGGCGGTGTGCCCGGCAAGGATACGTGCAAGGGTGACGGCGGTTCGCCGCTCGTCTGTCCCATCCCGAACTCGCCCCACCACTACTACCAGACGGGGCTGGTCGCGTGGGGCATCG]

[+] EMBL BX607494             [GGCCGAGAATAATTTTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTTGTAATAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTTTCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCAATTGGGAGACGCTACCTACCTTCGGGCGGTCTGCACAACGATGTGGCCCTACTGTTCCTTAACGCGCCCGTCGAACCGAACGAAAGCATCCAGACGGTGTGTCTGCCCCCGCAGGACATGGCGTTCAACCACGAGACGTGCTTTGCCAGCGGCTGGGGCAAGGACGTGTTCGGTAAGGCCGGCACGTACCAGGTCATCCTGAAGAAGATTGATCTGCCGGTCGTGCCGAACGATCAGTGCCAGACGGCGCTGCGCACCACGCGCCTCGGGCCCAAGTTTAACCTGCACAAGAGCTTCATCTGTGCGGGCGGTGTGCCCGGCAAGGATACGTGCAAGGGTGACGGCGGTTCGCCGCTCGTCTGTCCCATCCCGAACTCGCCCCACCACTACTACCAGACGGGGCTGGTCGCGTGGGGCATCG]




>consensus_213#1
GGCCGAGAATAATTTTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTG
GTTTGTAATAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGG
CGCGAGAGGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAG
GATGCTTTCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTA
GTTCTAACCGTAAACGATGCCAATTAGCAATTGGGAGACGCTACCTACCTTCGGGCGGTC
TGCACAACGATGTGGCCCTACTGTTCCTTAACGCGCCCGTCGAACCGAACGAAAGCATCC
AGACGGTGTGTCTGCCCCCGCAGGACATGGCGTTCAACCACGAGACGTGCTTTGCCAGCG
GCTGGGGCAAGGACGTGTTCGGTAAGGCCGGCACGTACCAGGTCATCCTGAAGAAGATTG
ATCTGCCGGTCGTGCCGAACGATCAGTGCCAGACGGCGCTGCGCACCACGCGCCTCGGGC
CCAAGTTTAACCTGCACAAGAGCTTCATCTGTGCGGGCGGTGTGCCCGGCAAGGATACGT
GCAAGGGTGACGGCGGTTCGCCGCTCGTCTGTCCCATCCCGAACTCGCCCCACCACTACT
ACCAGACGGGGCTGGTCGCGTGGGGCATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_213#0      GCAGAATCCCCACGAGGAGATTCGCTCGTGGTAGTCACCGTCATTCTCGTGCGCGATCTA 60
consensus_213#1      ------------------------------------------------------------
                                                                                 

consensus_213#0      GAAAACCGTGAGGAAGACCTACTGAACTTCAGCACCGAACGAGTTACTCTAGAACTGCAA 120
consensus_213#1      ---------------------------------------------------GGCCGAGAA 9
                                                                        *  *   **

consensus_213#0      CAATGTCGGAACGCGAAA-ATAACATCTACAAGGCGAAGCTGGCCGAACAGGCTGAGCGA 179
consensus_213#1      TAATTTTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTT-GTAA 68
                      *** * * *  *   **   *****   *  **      ***       ** *  *  *

consensus_213#0      TACGATGAAATGGTCGAAGCCATGAAGAAGGTCGCCTCCATGGATGTGGAGCTGACGGTG 239
consensus_213#1      TAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCG-CGAGA 127
                     **     * * *     *   *   *    ****    *** * * *   *  * **   

consensus_213#0      GAGGAAAGAAATCTCCTGTCGGTGG-CTTACAAAAACGTCATCGGT-GCACGTCGTGCTT 297
consensus_213#1      GGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTT 187
                     *  ****    *   * ****  ** *  *** ** **  * ** * **      *****

consensus_213#0      C--TTGGCGGATAATCTCTTCGATAGAGCAGAAGGAAGAGAACAAGGGAGTGGAGGAGAA 355
consensus_213#1      TCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGC-GATTAGATACCGCCCTAGTTCTA 246
                        **     * **        * **    *****  **  * *         **    *

consensus_213#0      GCTGGAAATGATCAAGAACTACCGCTCACAGGTTGAGAAGGAACTGCGCGACATCTGCTC 415
consensus_213#1      ACCGTAAACGAT-GCCAATTAGCAATTGGGAGACGCTACCTACCTTCGGGCGGTCTGCAC 305
                      * * *** ***    ** ** *  *     *  *  *   * ** ** *   ***** *

consensus_213#0      A--GACATTCTCGAGGTGCTTGATAA-GCATCTGATCCCGTGTGCAACGACCG-GTGAAA 471
consensus_213#1      AACGATGTGGCCCTACTGTTCCTTAACGCGCCCG---TCGAACCGAACGAAAGCATCCAG 362
                     *  **  *   *    ** *   *** **  * *    **     *****  *  *  * 

consensus_213#0      GCAAGGTGTTTTACTACAAGATGAAGGGCGATTATCACCGCTATCTGGCTGAGTTTGCCA 531
consensus_213#1      ACGGTGTGTCTGCCCCCGCAGGACATGGCGTTCA--ACCACGA---GACGTGCTTTGCCA 417
                      *   **** *  *  *       * **** * *  *** * *   * *    *******

consensus_213#0      CCGGTGGTGATCGTAAGGATGCCGCCGAGAAATTCGGCTCGTCGCGTACAAGGGCGTGCC 591
consensus_213#1      GCGGCTGGG---GCAAGGACGTGTTCGGTAAGGCCGGC-----ACGTACCAGGTCATCCT 469
                      ***  * *   * ***** *    **  **   ****      ***** *** * * * 

consensus_213#0      AAGGTGAATAATCGCGAATGACTTGACCCTTTCCAGCCAAACGGCACCCCAATTTCGATT 651
consensus_213#1      GAAGAAGAT---------TGATCTG--CCGGTCGTGCCGAACGAT----CAGTGCCAGAC 514
                      * *   **         ***  **  **  **  *** ****      ** *  *    

consensus_213#0      GGGGATTNGGGCTTTTGAACTTTCTCCAGTAATTTTACTTCATGAAAGTCCTGAACTCTC 711
consensus_213#1      GGCGCTGCGCACCAC-GCGCCTCGGGCCCAAGTTTAACCTGCACAAGAGCTTCATCTGTG 573
                     ** * *  *  *    *  * *    *   * *** ** *    **   * * * ** * 

consensus_213#0      CGGG-ATCGTGCCTTGGACCGTCTAGACGNAAAGG---CGGGAATTCG--GACGGATTGG 765
consensus_213#1      CGGGCGGTGTGCCCGGCAAGGA-TACGTGCAAGGGTGACGGCGGTTCGCCGCTCGTCTGT 632
                     ****    *****  * *  *  **   * ** **   ***   ****  *   *  ** 

consensus_213#0      CCTATTTGGGCGNAACCTGGATANTCCTGGAGCCGAAGGAACAGGCTTCACAGAGGAATT 825
consensus_213#1      CCCATCCCGAACTCGCCCCACCACTACT--ACCAGACGGGGCTGGTCGCGTGG-GGCATC 689
                     ** **   *      **     * * **  * * ** **  * **   *   * ** ** 

consensus_213#0      NCAAGGGGCNTGAAGTATTGCAGGGTTGCATTCGGGGGACGAAACGTG 873
consensus_213#1      G----------------------------------------------- 690