cluster # 2140

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Anopheles gambiae
cluster # 2140 cluster # 2140 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2140#0 length = 753 sequences # 1

consensus_2140#1 length = 661 sequences # 1

consensusID : consensus_2140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 753
fasta sequence

                              [GCAGAATCGCCACGAGNTACAGAATGAAGTCACTGGTGGCTCTCTGTGTCTGTGCGATGTCACTTGTATCACATCATACAGTAAGATCTTCCCCGATTAAAAGGACCTCTCCGATATTCCTTGATAGAGAAAACATGCATGAAGAAATTGGTGAATACTTCGAAGGAGACATGATGCTTTCTCTCGAGCAGACAGAAGCAGTTAAAAATGGATATGCCTCCATTGTGAATGATAAAACCAAGTGGCCGAACAACATCGTTTACTACACGATCGATACCACCGTTTACAACTCCGTTCACCAGAACAGCATTCGCACGGCAATGGATAGGATCGAGCAGGTGAGCTGCATCCGGTTTGTACCGGGCACGACCCAGAATGGTTACATTTTCATTTCGGAAACTGACCCGGGAGTCTGTTCGGCTAGGGTAGGCTATACTGGAACGAAGCAACCCGTCAACCTGTCAACGAACGGCTGCATGTCCCGTGGACACCATCATCCACGAGCTGCTGCATGCCCTCGGGTTCATTCATATGCAGAGTAGNCCCGATCGTGATCTCTACCTGGATATTGAACTACGCTGCCATAAGTACCGGGCAAAGAGCACAACTTCAATCGCTACTTTNCATCGGCGGCTGACGATCATGGCCATACCCGTACGGATTACGACAAGGTGCTGATGCATTACGCATCGACGGCAGTTNCNAGCGTANAATGGGCCAGCCGAACAGATTATTCCCGNANAAAACGACAAG]

[+] EMBL BX467314             [GCAGAATCGCCACGAGNTACAGAATGAAGTCACTGGTGGCTCTCTGTGTCTGTGCGATGTCACTTGTATCACATCATACAGTAAGATCTTCCCCGATTAAAAGGACCTCTCCGATATTCCTTGATAGAGAAAACATGCATGAAGAAATTGGTGAATACTTCGAAGGAGACATGATGCTTTCTCTCGAGCAGACAGAAGCAGTTAAAAATGGATATGCCTCCATTGTGAATGATAAAACCAAGTGGCCGAACAACATCGTTTACTACACGATCGATACCACCGTTTACAACTCCGTTCACCAGAACAGCATTCGCACGGCAATGGATAGGATCGAGCAGGTGAGCTGCATCCGGTTTGTACCGGGCACGACCCAGAATGGTTACATTTTCATTTCGGAAACTGACCCGGGAGTCTGTTCGGCTAGGGTAGGCTATACTGGAACGAAGCAACCCGTCAACCTGTCAACGAACGGCTGCATGTCCCGTGGACACCATCATCCACGAGCTGCTGCATGCCCTCGGGTTCATTCATATGCAGAGTAGNCCCGATCGTGATCTCTACCTGGATATTGAACTACGCTGCCATAAGTACCGGGCAAAGAGCACAACTTCAATCGCTACTTTNCATCGGCGGCTGACGATCATGGCCATACCCGTACGGATTACGACAAGGTGCTGATGCATTACGCATCGACGGCAGTTNCNAGCGTANAATGGGCCAGCCGAACAGATTATTCCCGNANAAAACGACAAG]




>consensus_2140#0
GCAGAATCGCCACGAGNTACAGAATGAAGTCACTGGTGGCTCTCTGTGTCTGTGCGATGT
CACTTGTATCACATCATACAGTAAGATCTTCCCCGATTAAAAGGACCTCTCCGATATTCC
TTGATAGAGAAAACATGCATGAAGAAATTGGTGAATACTTCGAAGGAGACATGATGCTTT
CTCTCGAGCAGACAGAAGCAGTTAAAAATGGATATGCCTCCATTGTGAATGATAAAACCA
AGTGGCCGAACAACATCGTTTACTACACGATCGATACCACCGTTTACAACTCCGTTCACC
AGAACAGCATTCGCACGGCAATGGATAGGATCGAGCAGGTGAGCTGCATCCGGTTTGTAC
CGGGCACGACCCAGAATGGTTACATTTTCATTTCGGAAACTGACCCGGGAGTCTGTTCGG
CTAGGGTAGGCTATACTGGAACGAAGCAACCCGTCAACCTGTCAACGAACGGCTGCATGT
CCCGTGGACACCATCATCCACGAGCTGCTGCATGCCCTCGGGTTCATTCATATGCAGAGT
AGNCCCGATCGTGATCTCTACCTGGATATTGAACTACGCTGCCATAAGTACCGGGCAAAG
AGCACAACTTCAATCGCTACTTTNCATCGGCGGCTGACGATCATGGCCATACCCGTACGG
ATTACGACAAGGTGCTGATGCATTACGCATCGACGGCAGTTNCNAGCGTANAATGGGCCA
GCCGAACAGATTATTCCCGNANAAAACGACAAG

consensusID : consensus_2140#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [AGCAAGAATCCCGAGGTTAACAACTCTACACAGAATGAANTCACTGGTGGCTCTCTGTGTCTGTGCGATGTCACTTGTATCACATCATACAGTAAGATCTTCCCCGATTAAAAGGACCTCTCCGATATTCCTTGATAGAGAAAACATGCATGAAGAAATTGGTGAATACTTCGAAGGAGACATGATGCTTTCTCTCGAGCAGACAGAAGCAGTTTAAAATGGATATGCCTCCATTGTGAATGATAAAAACCAATGTGGGCCGAACCAACACTCGTTTTACTTACCACNGATTCGATAACCAACCCGGTTTTACCAAAACTCNCGGTTCAACCCAGAAACCAAGCAATTCCGCAACGGGCCAAATTGGATAAGGGATCGAAGCANGGTTGANGCTTGGATCCCGGGATTTAGTCCCCGCCAGCAACGGAAGCCCCAAGAAACTGGGTTCTTAACCCTNTNTACATCTCACCGGCGACCAATCCTTGAACCCCCGGAGAAGATTCNTGNTNCCGGNCCTAAACGAGTTAAGAGCCTAACTAACTAGGGGAAACCAGAAAGCAAAACGCCCCGGTCAAACNCTGGTCCAAACCGGGAAAACGGGCGTAGGCACATTGTTCCCACCCGTCGCGCCACCCCAGTCTCCATACCCACCCGAACGCTT]

[+] EMBL AL696165             [AGCAAGAATCCCGAGGTTAACAACTCTACACAGAATGAANTCACTGGTGGCTCTCTGTGTCTGTGCGATGTCACTTGTATCACATCATACAGTAAGATCTTCCCCGATTAAAAGGACCTCTCCGATATTCCTTGATAGAGAAAACATGCATGAAGAAATTGGTGAATACTTCGAAGGAGACATGATGCTTTCTCTCGAGCAGACAGAAGCAGTTTAAAATGGATATGCCTCCATTGTGAATGATAAAAACCAATGTGGGCCGAACCAACACTCGTTTTACTTACCACNGATTCGATAACCAACCCGGTTTTACCAAAACTCNCGGTTCAACCCAGAAACCAAGCAATTCCGCAACGGGCCAAATTGGATAAGGGATCGAAGCANGGTTGANGCTTGGATCCCGGGATTTAGTCCCCGCCAGCAACGGAAGCCCCAAGAAACTGGGTTCTTAACCCTNTNTACATCTCACCGGCGACCAATCCTTGAACCCCCGGAGAAGATTCNTGNTNCCGGNCCTAAACGAGTTAAGAGCCTAACTAACTAGGGGAAACCAGAAAGCAAAACGCCCCGGTCAAACNCTGGTCCAAACCGGGAAAACGGGCGTAGGCACATTGTTCCCACCCGTCGCGCCACCCCAGTCTCCATACCCACCCGAACGCTT]




>consensus_2140#1
AGCAAGAATCCCGAGGTTAACAACTCTACACAGAATGAANTCACTGGTGGCTCTCTGTGT
CTGTGCGATGTCACTTGTATCACATCATACAGTAAGATCTTCCCCGATTAAAAGGACCTC
TCCGATATTCCTTGATAGAGAAAACATGCATGAAGAAATTGGTGAATACTTCGAAGGAGA
CATGATGCTTTCTCTCGAGCAGACAGAAGCAGTTTAAAATGGATATGCCTCCATTGTGAA
TGATAAAAACCAATGTGGGCCGAACCAACACTCGTTTTACTTACCACNGATTCGATAACC
AACCCGGTTTTACCAAAACTCNCGGTTCAACCCAGAAACCAAGCAATTCCGCAACGGGCC
AAATTGGATAAGGGATCGAAGCANGGTTGANGCTTGGATCCCGGGATTTAGTCCCCGCCA
GCAACGGAAGCCCCAAGAAACTGGGTTCTTAACCCTNTNTACATCTCACCGGCGACCAAT
CCTTGAACCCCCGGAGAAGATTCNTGNTNCCGGNCCTAAACGAGTTAAGAGCCTAACTAA
CTAGGGGAAACCAGAAAGCAAAACGCCCCGGTCAAACNCTGGTCCAAACCGGGAAAACGG
GCGTAGGCACATTGTTCCCACCCGTCGCGCCACCCCAGTCTCCATACCCACCCGAACGCT
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2140#0      -----------GCAGAATCGCCACGAGNTACAGAATGAAGTCACTGGTGGCTCTCTGTGT 49
consensus_2140#1      AGCAAGAATCCCGAGGTTAACAACTCTACACAGAATGAANTCACTGGTGGCTCTCTGTGT 60
                                   **  *  * **     ********** ********************

consensus_2140#0      CTGTGCGATGTCACTTGTATCACATCATACAGTAAGATCTTCCCCGATTAAAAGGACCTC 109
consensus_2140#1      CTGTGCGATGTCACTTGTATCACATCATACAGTAAGATCTTCCCCGATTAAAAGGACCTC 120
                      ************************************************************

consensus_2140#0      TCCGATATTCCTTGATAGAGAAAACATGCATGAAGAAATTGGTGAATACTTCGAAGGAGA 169
consensus_2140#1      TCCGATATTCCTTGATAGAGAAAACATGCATGAAGAAATTGGTGAATACTTCGAAGGAGA 180
                      ************************************************************

consensus_2140#0      CATGATGCTTTCTCTCGAGCAGACAGAAGCAGTTAAAAATGGATATGCCTCCATTGTGAA 229
consensus_2140#1      CATGATGCTTTCTCTCGAGCAGACAGAAGCAGTTTAAAATGGATATGCCTCCATTGTGAA 240
                      ********************************** *************************

consensus_2140#0      TGATAAAACCAAGTG---GCCGAAC-AACA-TCGTTTACTACACGATCGATACCACCGTT 284
consensus_2140#1      TGATAAAAACCAATGTGGGCCGAACCAACACTCGTTTTACTTACCACNGATTCGATAAC- 299
                      ******** * * **   ******* **** ******     ** *  *** * *     

consensus_2140#0      TACAACTCCGTTC-ACCAGAACAGCATTCGCACGGCAATGGATAGGATCGAGCAGGTGAG 343
consensus_2140#1      --CAACCCGGTTTTACCAAAAC-----TCNCGGTTCAACCCA-GAAACCAAGCAATTCCG 351
                        **** * ***  **** ***     ** *    ***   *    * * ****  *  *

consensus_2140#0      CTGCAT-CCGGTTTGTACCGGGCACGACCCAGAATGGTT-ACATTTTCATTTCGGAAACT 401
consensus_2140#1      CAACGGGCCAAATTGGATAAGGGAT--CGAAGCANGGTTGANGCTTGGATCCCGGGATTT 409
                      *  *   **   *** *   ** *   *  ** * **** *   **  **  *** *  *

consensus_2140#0      GA--CCCGGGAGTCTGTTCGGCTAGGGTAGGCTATACTGGAACGAAGCAACCCGTCAACC 459
consensus_2140#1      AGTCCCCGCCAGCAACGGAAGCCCCAAGAAACTGGGTTCTTAACCCTNTNTACATCTCAC 469
                          ****  **        **      *  **    *   *          * **   *

consensus_2140#0      TGTCAACGAACGGCTGCATGTCCCGTGGACACCATCATCCACGAGCTGCTGCATGCCCTC 519
consensus_2140#1      CGGCGACCAATCCTTGAACCCCCGGAGAAGATTCNTGNTNCCGGNCCTAAACGAGTTAAG 529
                       * * ** **    ** *   ** * * * *          **  *     *  *     

consensus_2140#0      GGGTTCATTCATATGCAGAGTAGNCCCGATCGTGATCTCTACCTGGATATTGAACTACGC 579
consensus_2140#1      AGCCTAACTAAC---TAGGGGAAACCAGAAAGCAAAACGCCCCGG----TCAAACNCTGG 582
                       *  * * * *     ** * *  ** **  *  *      ** *    *  ***   * 

consensus_2140#0      TGCCATAAGTACCGGGCAAA-GAGCACAACTTCAATCGCTACTTTNCATCGGCGGCTGAC 638
consensus_2140#1      TCCAA-----ACCGGGAAAACGGGCGTAGGCACA-TTGTTCCCACCCGTCG-CGCC--AC 633
                      * * *     ****** *** * **  *    ** * * * *    * *** ** *  **

consensus_2140#0      GATCATGGCCATACCCGTACGGATTACGACAAGGTGCTGATGCATTACGCATCGACGGCA 698
consensus_2140#1      CCCAGTCTCCATACCCACCCGAACGCTT-------------------------------- 661
                           *  ********   ** *                                     

consensus_2140#0      GTTNCNAGCGTANAATGGGCCAGCCGAACAGATTATTCCCGNANAAAACGACAAG 753
consensus_2140#1      -------------------------------------------------------