cluster # 2146

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Anopheles gambiae
cluster # 2146 cluster # 2146 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2146#0 length = 935 sequences # 1

consensus_2146#1 length = 426 sequences # 1

consensusID : consensus_2146#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 935
fasta sequence

                              [ATGCTCAGCAGAATCGCCCGAGGTTAATCACGGCCGAGACATCTGATGTGCAGCATCGACGAGGTGAACTCGGAGCGTGCGGGAGCTCGCGTACACCGCCATCACCGAGCTGGCATCGGTGGATTCGTTCCTGTCGCCGCAGGAAAAGCTCGACTGCATCGTGCGCTGCTGCCGGCACATCTTTAGCTTCCTGAAGAAATCGGTGCAAGGGCCGGCCAGTGCGGATGACTTTCTGCCGGCGCTGATCTTCGTGGTGCTGAAATCGAACCCGGTGCGACTGCACAGCAATATTAAACTTTATTACGCGGTTCAGCAAACGCTTCGCGGCTGATGAGCCGGGCGCANGGCGGTTACTGTTTCACCAACTTTGTGTCTAGTGCAATATCGCTTCATCGGAAGAAACATTATTCCGGGCCGAAGTCGGCCTCTACGCTTGACCGGCAAGAGCCCGACGCTTTCCGGAGCTAGGGTGACTCACTAGTCCGAGCGGCGCAGCAACCGCAANGGGGGCACCCGTCTCGGGCGGCTGGCGCACAAAGGTTGCAACCTGGACTACCGCCACTTGNCGGAGACAGCTCTTGGCGAGACCCCAGNAAATTATNCCACCGACACAGACCATCGNACANCAGNCGCCTCNCNACCAACCCCACACGCCCCCGCCGCCACACACCACACAACAGNGCACACCTCGNCCCCGNCAACNTTACACCACCGNGNNCNACACCCAATCACGGCNCGCCNTCGGAAACCCGCAGACANCAGGCAAATCCGGGNCAAACCCACNCTCGGGCGCNCGCAAGGGAGCAANTTTTCCGGACCAAAAACCCGGNTAACGACCAGGAGTGGTGNCGTTTGGAACCCCGGCGACCACNCCGGGNGTCGCTGGCGATAATATNGGCCCCCCTGGGGCAAGAAACGGACAGCNGGNCNTCCNC]

[+] EMBL AL696189             [ATGCTCAGCAGAATCGCCCGAGGTTAATCACGGCCGAGACATCTGATGTGCAGCATCGACGAGGTGAACTCGGAGCGTGCGGGAGCTCGCGTACACCGCCATCACCGAGCTGGCATCGGTGGATTCGTTCCTGTCGCCGCAGGAAAAGCTCGACTGCATCGTGCGCTGCTGCCGGCACATCTTTAGCTTCCTGAAGAAATCGGTGCAAGGGCCGGCCAGTGCGGATGACTTTCTGCCGGCGCTGATCTTCGTGGTGCTGAAATCGAACCCGGTGCGACTGCACAGCAATATTAAACTTTATTACGCGGTTCAGCAAACGCTTCGCGGCTGATGAGCCGGGCGCANGGCGGTTACTGTTTCACCAACTTTGTGTCTAGTGCAATATCGCTTCATCGGAAGAAACATTATTCCGGGCCGAAGTCGGCCTCTACGCTTGACCGGCAAGAGCCCGACGCTTTCCGGAGCTAGGGTGACTCACTAGTCCGAGCGGCGCAGCAACCGCAANGGGGGCACCCGTCTCGGGCGGCTGGCGCACAAAGGTTGCAACCTGGACTACCGCCACTTGNCGGAGACAGCTCTTGGCGAGACCCCAGNAAATTATNCCACCGACACAGACCATCGNACANCAGNCGCCTCNCNACCAACCCCACACGCCCCCGCCGCCACACACCACACAACAGNGCACACCTCGNCCCCGNCAACNTTACACCACCGNGNNCNACACCCAATCACGGCNCGCCNTCGGAAACCCGCAGACANCAGGCAAATCCGGGNCAAACCCACNCTCGGGCGCNCGCAAGGGAGCAANTTTTCCGGACCAAAAACCCGGNTAACGACCAGGAGTGGTGNCGTTTGGAACCCCGGCGACCACNCCGGGNGTCGCTGGCGATAATATNGGCCCCCCTGGGGCAAGAAACGGACAGCNGGNCNTCCNC]




>consensus_2146#0
ATGCTCAGCAGAATCGCCCGAGGTTAATCACGGCCGAGACATCTGATGTGCAGCATCGAC
GAGGTGAACTCGGAGCGTGCGGGAGCTCGCGTACACCGCCATCACCGAGCTGGCATCGGT
GGATTCGTTCCTGTCGCCGCAGGAAAAGCTCGACTGCATCGTGCGCTGCTGCCGGCACAT
CTTTAGCTTCCTGAAGAAATCGGTGCAAGGGCCGGCCAGTGCGGATGACTTTCTGCCGGC
GCTGATCTTCGTGGTGCTGAAATCGAACCCGGTGCGACTGCACAGCAATATTAAACTTTA
TTACGCGGTTCAGCAAACGCTTCGCGGCTGATGAGCCGGGCGCANGGCGGTTACTGTTTC
ACCAACTTTGTGTCTAGTGCAATATCGCTTCATCGGAAGAAACATTATTCCGGGCCGAAG
TCGGCCTCTACGCTTGACCGGCAAGAGCCCGACGCTTTCCGGAGCTAGGGTGACTCACTA
GTCCGAGCGGCGCAGCAACCGCAANGGGGGCACCCGTCTCGGGCGGCTGGCGCACAAAGG
TTGCAACCTGGACTACCGCCACTTGNCGGAGACAGCTCTTGGCGAGACCCCAGNAAATTA
TNCCACCGACACAGACCATCGNACANCAGNCGCCTCNCNACCAACCCCACACGCCCCCGC
CGCCACACACCACACAACAGNGCACACCTCGNCCCCGNCAACNTTACACCACCGNGNNCN
ACACCCAATCACGGCNCGCCNTCGGAAACCCGCAGACANCAGGCAAATCCGGGNCAAACC
CACNCTCGGGCGCNCGCAAGGGAGCAANTTTTCCGGACCAAAAACCCGGNTAACGACCAG
GAGTGGTGNCGTTTGGAACCCCGGCGACCACNCCGGGNGTCGCTGGCGATAATATNGGCC
CCCCTGGGGCAAGAAACGGACAGCNGGNCNTCCNC

consensusID : consensus_2146#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence

                              [CCGGAACCACAAGTATCTGTTCTCGCCGCCGTCCACCGACGACGAGGACAACGATTCGTACATTCACAAGCGCATCCGGCAGCTGAACTGGATCACGGCCGAGCATCTGATGTGCAGCATCGACGAGGTGAACTCGGAGGTGCGGGAGCTCGCGTACACCGCCATCACCGAGCTGGCATCGGTGGATTCGTTCCTGTCGCCGCAGGAAAAGCTCGACTGCATCGTGCGCTGCTGCCGGCACATCTTTAGCTTCCTGAAGAAATCGGTGCAAGGGCCGGCCAGTGCGGATGACTTTCTGCCGGCGCTGATCTTCGTGGTGCTGAAATCGAACCCGGTGCGACTGCACAGCAATATTAACTTTATTACGCGGTTCAGCAACGCTTCGCGGCTGATGAGCGGCGAGGGCGGTTACTGTTTCACCAATTT]

[+] EMBL BM630055             [CCGGAACCACAAGTATCTGTTCTCGCCGCCGTCCACCGACGACGAGGACAACGATTCGTACATTCACAAGCGCATCCGGCAGCTGAACTGGATCACGGCCGAGCATCTGATGTGCAGCATCGACGAGGTGAACTCGGAGGTGCGGGAGCTCGCGTACACCGCCATCACCGAGCTGGCATCGGTGGATTCGTTCCTGTCGCCGCAGGAAAAGCTCGACTGCATCGTGCGCTGCTGCCGGCACATCTTTAGCTTCCTGAAGAAATCGGTGCAAGGGCCGGCCAGTGCGGATGACTTTCTGCCGGCGCTGATCTTCGTGGTGCTGAAATCGAACCCGGTGCGACTGCACAGCAATATTAACTTTATTACGCGGTTCAGCAACGCTTCGCGGCTGATGAGCGGCGAGGGCGGTTACTGTTTCACCAATTT]




>consensus_2146#1
CCGGAACCACAAGTATCTGTTCTCGCCGCCGTCCACCGACGACGAGGACAACGATTCGTA
CATTCACAAGCGCATCCGGCAGCTGAACTGGATCACGGCCGAGCATCTGATGTGCAGCAT
CGACGAGGTGAACTCGGAGGTGCGGGAGCTCGCGTACACCGCCATCACCGAGCTGGCATC
GGTGGATTCGTTCCTGTCGCCGCAGGAAAAGCTCGACTGCATCGTGCGCTGCTGCCGGCA
CATCTTTAGCTTCCTGAAGAAATCGGTGCAAGGGCCGGCCAGTGCGGATGACTTTCTGCC
GGCGCTGATCTTCGTGGTGCTGAAATCGAACCCGGTGCGACTGCACAGCAATATTAACTT
TATTACGCGGTTCAGCAACGCTTCGCGGCTGATGAGCGGCGAGGGCGGTTACTGTTTCAC
CAATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2146#0      ------------------------------------------------------------
consensus_2146#1      CCGGAACCACAAGTATCTGTTCTCGCCGCCGTCCACCGACGACGAGGACAACGATTCGTA 60
                                                                                  

consensus_2146#0      -ATGCTCAGCAGAATC----GCCCGAGGTTAATCACGGCCGAGACATCTGATGTGCAGCA 55
consensus_2146#1      CATTCACAAGCGCATCCGGCAGCTGAACTGGATCACGGCCGAG-CATCTGATGTGCAGCA 119
                       ** * **   * ***      * **  *  ************ ****************

consensus_2146#0      TCGACGAGGTGAACTCGGAGCGTGCGGGAGCTCGCGTACACCGCCATCACCGAGCTGGCA 115
consensus_2146#1      TCGACGAGGTGAACTCGGAG-GTGCGGGAGCTCGCGTACACCGCCATCACCGAGCTGGCA 178
                      ******************** ***************************************

consensus_2146#0      TCGGTGGATTCGTTCCTGTCGCCGCAGGAAAAGCTCGACTGCATCGTGCGCTGCTGCCGG 175
consensus_2146#1      TCGGTGGATTCGTTCCTGTCGCCGCAGGAAAAGCTCGACTGCATCGTGCGCTGCTGCCGG 238
                      ************************************************************

consensus_2146#0      CACATCTTTAGCTTCCTGAAGAAATCGGTGCAAGGGCCGGCCAGTGCGGATGACTTTCTG 235
consensus_2146#1      CACATCTTTAGCTTCCTGAAGAAATCGGTGCAAGGGCCGGCCAGTGCGGATGACTTTCTG 298
                      ************************************************************

consensus_2146#0      CCGGCGCTGATCTTCGTGGTGCTGAAATCGAACCCGGTGCGACTGCACAGCAATATTAAA 295
consensus_2146#1      CCGGCGCTGATCTTCGTGGTGCTGAAATCGAACCCGGTGCGACTGCACAGCAATATTAA- 357
                      *********************************************************** 

consensus_2146#0      CTTTATTACGCGGTTCAGCAAACGCTTCGCGGCTGATGAGCCGGGCGCANGGCGGTTACT 355
consensus_2146#1      CTTTATTACGCGGTTCAGCAA-CGCTTCGCGGCTGATGAGC--GGCG-AGGGCGGTTACT 413
                      ********************* *******************  **** * **********

consensus_2146#0      GTTTCACCAACTTTGTGTCTAGTGCAATATCGCTTCATCGGAAGAAACATTATTCCGGGC 415
consensus_2146#1      GTTTCACCAATTT----------------------------------------------- 426
                      ********** **                                               

consensus_2146#0      CGAAGTCGGCCTCTACGCTTGACCGGCAAGAGCCCGACGCTTTCCGGAGCTAGGGTGACT 475
consensus_2146#1      ------------------------------------------------------------
                                                                                  

consensus_2146#0      CACTAGTCCGAGCGGCGCAGCAACCGCAANGGGGGCACCCGTCTCGGGCGGCTGGCGCAC 535
consensus_2146#1      ------------------------------------------------------------
                                                                                  

consensus_2146#0      AAAGGTTGCAACCTGGACTACCGCCACTTGNCGGAGACAGCTCTTGGCGAGACCCCAGNA 595
consensus_2146#1      ------------------------------------------------------------
                                                                                  

consensus_2146#0      AATTATNCCACCGACACAGACCATCGNACANCAGNCGCCTCNCNACCAACCCCACACGCC 655
consensus_2146#1      ------------------------------------------------------------
                                                                                  

consensus_2146#0      CCCGCCGCCACACACCACACAACAGNGCACACCTCGNCCCCGNCAACNTTACACCACCGN 715
consensus_2146#1      ------------------------------------------------------------
                                                                                  

consensus_2146#0      GNNCNACACCCAATCACGGCNCGCCNTCGGAAACCCGCAGACANCAGGCAAATCCGGGNC 775
consensus_2146#1      ------------------------------------------------------------
                                                                                  

consensus_2146#0      AAACCCACNCTCGGGCGCNCGCAAGGGAGCAANTTTTCCGGACCAAAAACCCGGNTAACG 835
consensus_2146#1      ------------------------------------------------------------
                                                                                  

consensus_2146#0      ACCAGGAGTGGTGNCGTTTGGAACCCCGGCGACCACNCCGGGNGTCGCTGGCGATAATAT 895
consensus_2146#1      ------------------------------------------------------------
                                                                                  

consensus_2146#0      NGGCCCCCCTGGGGCAAGAAACGGACAGCNGGNCNTCCNC 935
consensus_2146#1      ----------------------------------------