cluster # 215

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Anopheles gambiae
cluster # 215 cluster # 215 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_215#0 length = 602 sequences # 1

consensus_215#1 length = 485 sequences # 1

consensusID : consensus_215#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence

                              [ACTGCGTCGCGGACTCGACAACACGTTCGCAGCGACACAGCACCGTGCAAGGCAGACAGTCCGTGTGTGTGCCTCTCTCTCGCGAGTGTGGAGAGGCTCAGGAAAAAGGGAAAGAAAATCAAACAAATTCCGGACAGACCGAGAGCGCCCGTACAGCGAATAGATACATACCGTCGTTGTCGTCGTCGTCACCAGGACATACAGTGTGTGTGGGTCGGGACCGTGTCATAATCATCATCGCGGCCAGTACCGTACGCTCCTGCAAGTGGAGATAACCGTTCCTCTGTCCTCTGCGTTGGCCACTCTGGCCGAGCGCGTGCCCCCGAACCAGAAGGCTAACCTGGCCGCGTTCAAGACGAAGAGCGACAAATATCTGCGCAGCGTTGTTGCCAACCCGGAGACACCGCCGAAAATCGACTGGTCGTTCTACAAGAAGAATGTCCCCGTGGCCGGCATGGTGGACAAGTTCCAGAAGGCGTACGANNGCCTGCAGATCCCGTACCCGGCCGATAACGTGACCAAGCTGGTGGAGGCGCAGGAGANNGAGGTCCAGCAGGATATCGCCNAAGTTCGTGANNGAGTCGGAGGTGCGCATTCCCCGA]

[+] EMBL CF541552             [ACTGCGTCGCGGACTCGACAACACGTTCGCAGCGACACAGCACCGTGCAAGGCAGACAGTCCGTGTGTGTGCCTCTCTCTCGCGAGTGTGGAGAGGCTCAGGAAAAAGGGAAAGAAAATCAAACAAATTCCGGACAGACCGAGAGCGCCCGTACAGCGAATAGATACATACCGTCGTTGTCGTCGTCGTCACCAGGACATACAGTGTGTGTGGGTCGGGACCGTGTCATAATCATCATCGCGGCCAGTACCGTACGCTCCTGCAAGTGGAGATAACCGTTCCTCTGTCCTCTGCGTTGGCCACTCTGGCCGAGCGCGTGCCCCCGAACCAGAAGGCTAACCTGGCCGCGTTCAAGACGAAGAGCGACAAATATCTGCGCAGCGTTGTTGCCAACCCGGAGACACCGCCGAAAATCGACTGGTCGTTCTACAAGAAGAATGTCCCCGTGGCCGGCATGGTGGACAAGTTCCAGAAGGCGTACGANNGCCTGCAGATCCCGTACCCGGCCGATAACGTGACCAAGCTGGTGGAGGCGCAGGAGANNGAGGTCCAGCAGGATATCGCCNAAGTTCGTGANNGAGTCGGAGGTGCGCATTCCCCGA]




>consensus_215#0
ACTGCGTCGCGGACTCGACAACACGTTCGCAGCGACACAGCACCGTGCAAGGCAGACAGT
CCGTGTGTGTGCCTCTCTCTCGCGAGTGTGGAGAGGCTCAGGAAAAAGGGAAAGAAAATC
AAACAAATTCCGGACAGACCGAGAGCGCCCGTACAGCGAATAGATACATACCGTCGTTGT
CGTCGTCGTCACCAGGACATACAGTGTGTGTGGGTCGGGACCGTGTCATAATCATCATCG
CGGCCAGTACCGTACGCTCCTGCAAGTGGAGATAACCGTTCCTCTGTCCTCTGCGTTGGC
CACTCTGGCCGAGCGCGTGCCCCCGAACCAGAAGGCTAACCTGGCCGCGTTCAAGACGAA
GAGCGACAAATATCTGCGCAGCGTTGTTGCCAACCCGGAGACACCGCCGAAAATCGACTG
GTCGTTCTACAAGAAGAATGTCCCCGTGGCCGGCATGGTGGACAAGTTCCAGAAGGCGTA
CGANNGCCTGCAGATCCCGTACCCGGCCGATAACGTGACCAAGCTGGTGGAGGCGCAGGA
GANNGAGGTCCAGCAGGATATCGCCNAAGTTCGTGANNGAGTCGGAGGTGCGCATTCCCC
GA

consensusID : consensus_215#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [AACAGCAAATAGCGCTCTGCATGCTGCCGCTGATGCTGTTCGAGGAAGGCAAGGCCGGTTACGATCTGGTGACGAGCGGAGACTTTGTGGCGCACTATGGTAGAACGAGCAGAACACGTTAAATTTGTACCAGCAAAGGAACGCATTAAACAACACTGAAGTAATTTAACGAGCTGCAAAACAGACCGCAACCAGACACGCGGACCAACACGGTTATCACATTGCATCCGAAATCTCGTCTTCAAACTTATCAGCAAATCGAAGCATTGCACGTGAAGCGTCTTCCTGCTTGTGATGATAGCCCACACACACACATGCACGCGGCCATCGAACGAAACACCGGGAAGAATTCGCAAATAAAAACCCACCCGACCCGGCCCGAGATAACGCGACCGCCAAACCGTCCAAACAGAAAGCAGTTTGGTGCGATAAGCGCGCGAAAGGTTGGGAGAGGGTAGATTAGATTCGGGAGTTTGCAGATTTTT]

[+] EMBL BX603154             [AACAGCAAATAGCGCTCTGCATGCTGCCGCTGATGCTGTTCGAGGAAGGCAAGGCCGGTTACGATCTGGTGACGAGCGGAGACTTTGTGGCGCACTATGGTAGAACGAGCAGAACACGTTAAATTTGTACCAGCAAAGGAACGCATTAAACAACACTGAAGTAATTTAACGAGCTGCAAAACAGACCGCAACCAGACACGCGGACCAACACGGTTATCACATTGCATCCGAAATCTCGTCTTCAAACTTATCAGCAAATCGAAGCATTGCACGTGAAGCGTCTTCCTGCTTGTGATGATAGCCCACACACACACATGCACGCGGCCATCGAACGAAACACCGGGAAGAATTCGCAAATAAAAACCCACCCGACCCGGCCCGAGATAACGCGACCGCCAAACCGTCCAAACAGAAAGCAGTTTGGTGCGATAAGCGCGCGAAAGGTTGGGAGAGGGTAGATTAGATTCGGGAGTTTGCAGATTTTT]




>consensus_215#1
AACAGCAAATAGCGCTCTGCATGCTGCCGCTGATGCTGTTCGAGGAAGGCAAGGCCGGTT
ACGATCTGGTGACGAGCGGAGACTTTGTGGCGCACTATGGTAGAACGAGCAGAACACGTT
AAATTTGTACCAGCAAAGGAACGCATTAAACAACACTGAAGTAATTTAACGAGCTGCAAA
ACAGACCGCAACCAGACACGCGGACCAACACGGTTATCACATTGCATCCGAAATCTCGTC
TTCAAACTTATCAGCAAATCGAAGCATTGCACGTGAAGCGTCTTCCTGCTTGTGATGATA
GCCCACACACACACATGCACGCGGCCATCGAACGAAACACCGGGAAGAATTCGCAAATAA
AAACCCACCCGACCCGGCCCGAGATAACGCGACCGCCAAACCGTCCAAACAGAAAGCAGT
TTGGTGCGATAAGCGCGCGAAAGGTTGGGAGAGGGTAGATTAGATTCGGGAGTTTGCAGA
TTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_215#0      ACTGCGTCGCGGACTCGACAACACGTTCGCAGCGACACAGCACCGTGCAAGGCAGACAGT 60
consensus_215#1      ------------------------------------------------------------
                                                                                 

consensus_215#0      CCGTGTGTGTGCCTCTCTCTCGCGAGTGTGGAGAG-GCTCAGGAAAAAGGGAAAGAAAAT 119
consensus_215#1      -----------------------AACAGCAAATAGCGCTCTGCATGCTGCCGCTGATGCT 37
                                             *  *   * ** **** * *    *     **   *

consensus_215#0      CAAACAAATTCCGGACAGACCGAGAGCGCCCGTACAGCGAATAGATACATACCGTCGTTG 179
consensus_215#1      --GTTCGAGGAAGGCAAGGCCGGTTACGATCTGGTGACGAGCGGAGACTTTGTGGCGC-A 94
                            *    **  ** ***    **  *      ***   ** ** *   * **   

consensus_215#0      TCGTCGTCGTCACCAGGACATACAGTGTGTGTGGGTCGGGACCGTGTCATAATCATCATC 239
consensus_215#1      CTATGGTAGAACGAGCAGAACACGTTAAATTTGTACCAGCAAAGGAACGCATTAAACAAC 154
                        * ** *          * **  *   * **   * * *  *   *  * * * ** *

consensus_215#0      GCGGCCAGTACCGTACGCTCCTGCAAGTGGAG-ATAACCGTTC-CTCTGTCCTCTGCGTT 297
consensus_215#1      ACTGAAGTAATTTAACGAGCTGCAAAACAGACCGCAACCAGACACGCGGACCAACACGGT 214
                      * *     *    ***  *    **   **    ****   * * * * **    ** *

consensus_215#0      GGCCACTCTGG--CCGAGCGCGTGCCCCCGAACCAGAAGGCTAACCTGGCCGCGTTCAAG 355
consensus_215#1      TATCACATTGCATCCGAAATCTCGTCTTCAAACTTATCAGCAAATCGAA--GCATT--GC 270
                        ***  **   ****   *  * *  * ***      ** ** *     ** **    

consensus_215#0      ACGAAGAGCGACAAATATCTGCGCAGCGTTGTTGCCAACCCGGAGACACCGCCGAAAATC 415
consensus_215#1      ACGTGAAGCGTC---TTCCTGCTTGTGATGATAGCCCACACACACACAT-GCACGCGGCC 326
                     ***   **** *   *  ****      *  * *** ** *  * ***  **       *

consensus_215#0      GACTGGTCGTTCTACAAGAAGAATGTCCCCGTGGCCGGCATGGTGGACAAGTTCCAGAAG 475
consensus_215#1      ATCGAACGAAACACCGGGAAGAATTCGCAAATAAAAACCCACCCGACCCGGCCCGAGATA 386
                       *        *  *  *******   *   *      *     *  *  *  * ***  

consensus_215#0      GCGTACGANNGCCTGCAGATCCCGTACCCGGCCGATAACGTGACCAAGCTGGTGGAGGCG 535
consensus_215#1      ACG--CGACCGCC-----AAACCGT-CCAAACAGAAAGCA-GTTTGGTGCGATAAGCGCG 437
                      **  ***  ***     *  **** **   * ** * *  *        * *    ***

consensus_215#0      CAGGAGANNGAGGTCCAGCAGGATATCGCCNA-AGTTCGTGANNGAGTCGGAGGTGCGCA 594
consensus_215#1      CGAAAGGTTGGGAGAGGGTAGATTAGATTCGGGAGTTTGCAGATTTTT------------ 485
                     *   **   * *     * **  **    *   **** *        *            

consensus_215#0      TTCCCCGA 602
consensus_215#1      --------