cluster # 2158

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Anopheles gambiae
cluster # 2158 cluster # 2158 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2158#0 length = 642 sequences # 1

consensus_2158#1 length = 560 sequences # 1

consensusID : consensus_2158#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [ATCGCAGCAGGTTACAGCTTTAGCAGTACACGATCTGGTCGCTAAGTGTTTCCATCGCAGCCCAATAAGCTCCAGCTTGCTACAACCCGTCACCATGAAGGCTGTCCTGTTCTTCGCCGCTCTCGCGCTGTTCGTCGCACTGGCCCTCGGCCAGAATGGCTGCGTCCGTGACGATTCCGACGGTCAGCCGCTCTGCAAATGCTGAGGAAATGACGGCCCGCCTGTGGCGTAACAACTGGGACCCCACCGCTACTGGGAGTGCGAGACTGCCAACACGCCCGCCACTACCGTCGCTGCCGACCGAAGGTATGTTCAACGGTGCCACCCGTACCTGCATCAACTGGTTCGACTGGGAGTGGACCCCGAACTGCAAGCACGGCACAGAACGCGTGTAAAGGCCGGTATTAGGAAANGGGTGGGAAACACCGTGCTCACGCACAAAACACCACACGAATCCTTCCTANNTTNCCCCNCTTACCCGTTCTACACATGTCGGCTAAAGAGCCACCACGCTCCTCTCCCGAAAGTTTTGCGGGACTTTTCAGATCNGGCATTTGNACAACAAAGTCCCGAAACAGCAATCACCAAAACCAACTGTGTATGTAAACGGACAACGTACCNAACATCCCGGGTCNAATCAAA]

[+] EMBL AL696305             [ATCGCAGCAGGTTACAGCTTTAGCAGTACACGATCTGGTCGCTAAGTGTTTCCATCGCAGCCCAATAAGCTCCAGCTTGCTACAACCCGTCACCATGAAGGCTGTCCTGTTCTTCGCCGCTCTCGCGCTGTTCGTCGCACTGGCCCTCGGCCAGAATGGCTGCGTCCGTGACGATTCCGACGGTCAGCCGCTCTGCAAATGCTGAGGAAATGACGGCCCGCCTGTGGCGTAACAACTGGGACCCCACCGCTACTGGGAGTGCGAGACTGCCAACACGCCCGCCACTACCGTCGCTGCCGACCGAAGGTATGTTCAACGGTGCCACCCGTACCTGCATCAACTGGTTCGACTGGGAGTGGACCCCGAACTGCAAGCACGGCACAGAACGCGTGTAAAGGCCGGTATTAGGAAANGGGTGGGAAACACCGTGCTCACGCACAAAACACCACACGAATCCTTCCTANNTTNCCCCNCTTACCCGTTCTACACATGTCGGCTAAAGAGCCACCACGCTCCTCTCCCGAAAGTTTTGCGGGACTTTTCAGATCNGGCATTTGNACAACAAAGTCCCGAAACAGCAATCACCAAAACCAACTGTGTATGTAAACGGACAACGTACCNAACATCCCGGGTCNAATCAAA]




>consensus_2158#0
ATCGCAGCAGGTTACAGCTTTAGCAGTACACGATCTGGTCGCTAAGTGTTTCCATCGCAG
CCCAATAAGCTCCAGCTTGCTACAACCCGTCACCATGAAGGCTGTCCTGTTCTTCGCCGC
TCTCGCGCTGTTCGTCGCACTGGCCCTCGGCCAGAATGGCTGCGTCCGTGACGATTCCGA
CGGTCAGCCGCTCTGCAAATGCTGAGGAAATGACGGCCCGCCTGTGGCGTAACAACTGGG
ACCCCACCGCTACTGGGAGTGCGAGACTGCCAACACGCCCGCCACTACCGTCGCTGCCGA
CCGAAGGTATGTTCAACGGTGCCACCCGTACCTGCATCAACTGGTTCGACTGGGAGTGGA
CCCCGAACTGCAAGCACGGCACAGAACGCGTGTAAAGGCCGGTATTAGGAAANGGGTGGG
AAACACCGTGCTCACGCACAAAACACCACACGAATCCTTCCTANNTTNCCCCNCTTACCC
GTTCTACACATGTCGGCTAAAGAGCCACCACGCTCCTCTCCCGAAAGTTTTGCGGGACTT
TTCAGATCNGGCATTTGNACAACAAAGTCCCGAAACAGCAATCACCAAAACCAACTGTGT
ATGTAAACGGACAACGTACCNAACATCCCGGGTCNAATCAAA

consensusID : consensus_2158#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence

                              [TTGCTACAACCCGTCACCATGAAGGCTGTCCTGTTCTTCGCCGCTCTCGCGCTGTTCGTCGCACTGGCCCTCGGCCAGAATGGCTGCGTCCGTGACGATTCCGACGGTCAGCCGCTCTGCAATGCTGAGGAAATGACGGCCCGCCTGTGGCGTAACAACTGGGACCCCACCGCCTACTGGGAGTGCGAGACTGCCAACACGCCCGCCACCTACCGTCGCTGCCCGACCGAGGGTATGTTCAACGGTGCCACCCGTACCTGCATCAACTGGTTCGACTGGGAGTGGACCCCGACCTGCAAGCCGCCCAGCCGCGTGTAAGCCGGTATTAGGAAGGGGTGGGAAACCCGTGCTCACGCACAAAACACACACGAATCCTTCCTACTTCCCCCTTACCCGTCCTACACTTCGCTAAAACCACACGCTCCTCTCCCGAAGTTTTGCGGCTTTTTTGCATTGCAAAAAGTCCGAAACGCAATCACCACACCACTGTGTATGTAAAGGAAACGTACCAACATCCCGGCAATAAAAATAAAAAGGCTGTAGTTACTTAGAGTGCCAAT]

[+] EMBL BX620207             [TTGCTACAACCCGTCACCATGAAGGCTGTCCTGTTCTTCGCCGCTCTCGCGCTGTTCGTCGCACTGGCCCTCGGCCAGAATGGCTGCGTCCGTGACGATTCCGACGGTCAGCCGCTCTGCAATGCTGAGGAAATGACGGCCCGCCTGTGGCGTAACAACTGGGACCCCACCGCCTACTGGGAGTGCGAGACTGCCAACACGCCCGCCACCTACCGTCGCTGCCCGACCGAGGGTATGTTCAACGGTGCCACCCGTACCTGCATCAACTGGTTCGACTGGGAGTGGACCCCGACCTGCAAGCCGCCCAGCCGCGTGTAAGCCGGTATTAGGAAGGGGTGGGAAACCCGTGCTCACGCACAAAACACACACGAATCCTTCCTACTTCCCCCTTACCCGTCCTACACTTCGCTAAAACCACACGCTCCTCTCCCGAAGTTTTGCGGCTTTTTTGCATTGCAAAAAGTCCGAAACGCAATCACCACACCACTGTGTATGTAAAGGAAACGTACCAACATCCCGGCAATAAAAATAAAAAGGCTGTAGTTACTTAGAGTGCCAAT]




>consensus_2158#1
TTGCTACAACCCGTCACCATGAAGGCTGTCCTGTTCTTCGCCGCTCTCGCGCTGTTCGTC
GCACTGGCCCTCGGCCAGAATGGCTGCGTCCGTGACGATTCCGACGGTCAGCCGCTCTGC
AATGCTGAGGAAATGACGGCCCGCCTGTGGCGTAACAACTGGGACCCCACCGCCTACTGG
GAGTGCGAGACTGCCAACACGCCCGCCACCTACCGTCGCTGCCCGACCGAGGGTATGTTC
AACGGTGCCACCCGTACCTGCATCAACTGGTTCGACTGGGAGTGGACCCCGACCTGCAAG
CCGCCCAGCCGCGTGTAAGCCGGTATTAGGAAGGGGTGGGAAACCCGTGCTCACGCACAA
AACACACACGAATCCTTCCTACTTCCCCCTTACCCGTCCTACACTTCGCTAAAACCACAC
GCTCCTCTCCCGAAGTTTTGCGGCTTTTTTGCATTGCAAAAAGTCCGAAACGCAATCACC
ACACCACTGTGTATGTAAAGGAAACGTACCAACATCCCGGCAATAAAAATAAAAAGGCTG
TAGTTACTTAGAGTGCCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2158#0      ATCGCAGCAGGTTACAGCTTTAGCAGTACACGATCTGGTCGCTAAGTGTTTCCATCGCAG 60
consensus_2158#1      ------------------------------------------------------------
                                                                                  

consensus_2158#0      CCCAATAAGCTCCAGCTTGCTACAACCCGTCACCATGAAGGCTGTCCTGTTCTTCGCCGC 120
consensus_2158#1      ----------------TTGCTACAACCCGTCACCATGAAGGCTGTCCTGTTCTTCGCCGC 44
                                      ********************************************

consensus_2158#0      TCTCGCGCTGTTCGTCGCACTGGCCCTCGGCCAGAATGGCTGCGTCCGTGACGATTCCGA 180
consensus_2158#1      TCTCGCGCTGTTCGTCGCACTGGCCCTCGGCCAGAATGGCTGCGTCCGTGACGATTCCGA 104
                      ************************************************************

consensus_2158#0      CGGTCAGCCGCTCTGCAAATGCTGAGGAAATGACGGCCCGCCTGTGGCGTAACAACTGGG 240
consensus_2158#1      CGGTCAGCCGCTCTGCAA-TGCTGAGGAAATGACGGCCCGCCTGTGGCGTAACAACTGGG 163
                      ****************** *****************************************

consensus_2158#0      ACCCCACCGC-TACTGGGAGTGCGAGACTGCCAACACGCCCGCCAC-TACCGTCGCTGCC 298
consensus_2158#1      ACCCCACCGCCTACTGGGAGTGCGAGACTGCCAACACGCCCGCCACCTACCGTCGCTGCC 223
                      ********** *********************************** *************

consensus_2158#0      -GACCGAAGGTATGTTCAACGGTGCCACCCGTACCTGCATCAACTGGTTCGACTGGGAGT 357
consensus_2158#1      CGACCGAGGGTATGTTCAACGGTGCCACCCGTACCTGCATCAACTGGTTCGACTGGGAGT 283
                       ****** ****************************************************

consensus_2158#0      GGACCCCGAACTGCAAGCACGGCACAGAACGCGTGTAAAGGCCGGTATTAGGAAANGGGT 417
consensus_2158#1      GGACCCCGACCTGCAAGCC--GCCCAGC-CGCGTGTAA--GCCGGTATTAGGAA-GGGGT 337
                      ********* ********   ** ***  *********  **************  ****

consensus_2158#0      GGGAAACACCGTGCTCACGCACAAAACACCACACGAATCCTTCCTANNTTNCCCCNCTTA 477
consensus_2158#1      GGGAAAC-CCGTGCTCACGCACAAAACAC-ACACGAATCCTTCCTACTT---CCCCCTTA 392
                      ******* ********************* ****************  *   *** ****

consensus_2158#0      CCCGTTCTACACATGTCGGCTAAAGAGCCACCACGCTCCTCTCCCGAAAGTTTTGCGGGA 537
consensus_2158#1      CCCGTCCTACAC---TTCGCTAAAA--CCAC-ACGCTCCTCTCCCGAA-GTTTTGCGGCT 445
                      ***** ******   *  ******   **** **************** *********  

consensus_2158#0      CTTTTCAGATCNGGCATTTGNACAACAAAGTCCCGAAACAGCAATCACCAAAACCAACTG 597
consensus_2158#1      TTTTT--------GCATTGCAA----AAAGTCC-GAAAC-GCAATCACCACA--CCACTG 489
                       ****        *****   *    ******* ***** ********** *  * ****

consensus_2158#0      TGTATGTAAACGGACAACGTACCNAACATCCCGG--GTCNAATCAAA------------- 642
consensus_2158#1      TGTATGTAAA--GGAAACGTACCAA-CATCCCGGCAATAAAAATAAAAAGGCTGTAGTTA 546
                      **********  *  ******** * ********   *  **  ***             

consensus_2158#0      --------------
consensus_2158#1      CTTAGAGTGCCAAT 560