cluster # 2173

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Anopheles gambiae
cluster # 2173 cluster # 2173 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2173#0 length = 644 sequences # 1

consensus_2173#1 length = 603 sequences # 1

consensusID : consensus_2173#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCGAAATCGTCTGCGAACGATGCAATCTTTTGTGTGATAATAAACGCCGCCTGTAGTGATAAAGTTGGCTTGCATTTTTTTTACACTTTTTTAAACTACCCCTAGGAGGGTGGGATCATCAATTTTCGTCGAAGTTTGTGCGTGACGCACGGAGCGAATGCGGGCTGGGTGTGTAGTGCTTGACTGGGTGATAACATGTCGTTGTACAAAATACGGGTGGCTGACTTGGAGAACATCTTGGAACAGGATGAGATAGATCTGAAAGTGCTCCGAAGCTTCTGCTTCAATGGCATACCGGACTGCAACGGATTTCGAGCGCTGTGCTGGAAGCTGCTGCTCGGCTATCTGAACCCCAAAAAGTCAACATGGCCAGCGAAGCTTACGAAGCAGCGCGAACTGTACAAACAGTTTGTCAAGGAAATGGTAATTTCGCCCGGCGAACAGGATGGCCCGGAATGTATCGATCATCCGCTGAGCGACGGTCCGGAAAGCAATTGGAGCACGTTCTTCAGGGACAATGAGGTGCTGCTACAGATCGACAAGGACGTGAGGCGGCTCTGTCCCGACATTTCCTTCTTCCAGCAGGCGACCGAGTTCCCCGTGCGAGTTTGTGAAAGAGCGCGAGCGAAAGCTGCACGTGCGAG]

[+] EMBL BM579301             [CCGAAATCGTCTGCGAACGATGCAATCTTTTGTGTGATAATAAACGCCGCCTGTAGTGATAAAGTTGGCTTGCATTTTTTTTACACTTTTTTAAACTACCCCTAGGAGGGTGGGATCATCAATTTTCGTCGAAGTTTGTGCGTGACGCACGGAGCGAATGCGGGCTGGGTGTGTAGTGCTTGACTGGGTGATAACATGTCGTTGTACAAAATACGGGTGGCTGACTTGGAGAACATCTTGGAACAGGATGAGATAGATCTGAAAGTGCTCCGAAGCTTCTGCTTCAATGGCATACCGGACTGCAACGGATTTCGAGCGCTGTGCTGGAAGCTGCTGCTCGGCTATCTGAACCCCAAAAAGTCAACATGGCCAGCGAAGCTTACGAAGCAGCGCGAACTGTACAAACAGTTTGTCAAGGAAATGGTAATTTCGCCCGGCGAACAGGATGGCCCGGAATGTATCGATCATCCGCTGAGCGACGGTCCGGAAAGCAATTGGAGCACGTTCTTCAGGGACAATGAGGTGCTGCTACAGATCGACAAGGACGTGAGGCGGCTCTGTCCCGACATTTCCTTCTTCCAGCAGGCGACCGAGTTCCCCGTGCGAGTTTGTGAAAGAGCGCGAGCGAAAGCTGCACGTGCGAG]




>consensus_2173#0
CCGAAATCGTCTGCGAACGATGCAATCTTTTGTGTGATAATAAACGCCGCCTGTAGTGAT
AAAGTTGGCTTGCATTTTTTTTACACTTTTTTAAACTACCCCTAGGAGGGTGGGATCATC
AATTTTCGTCGAAGTTTGTGCGTGACGCACGGAGCGAATGCGGGCTGGGTGTGTAGTGCT
TGACTGGGTGATAACATGTCGTTGTACAAAATACGGGTGGCTGACTTGGAGAACATCTTG
GAACAGGATGAGATAGATCTGAAAGTGCTCCGAAGCTTCTGCTTCAATGGCATACCGGAC
TGCAACGGATTTCGAGCGCTGTGCTGGAAGCTGCTGCTCGGCTATCTGAACCCCAAAAAG
TCAACATGGCCAGCGAAGCTTACGAAGCAGCGCGAACTGTACAAACAGTTTGTCAAGGAA
ATGGTAATTTCGCCCGGCGAACAGGATGGCCCGGAATGTATCGATCATCCGCTGAGCGAC
GGTCCGGAAAGCAATTGGAGCACGTTCTTCAGGGACAATGAGGTGCTGCTACAGATCGAC
AAGGACGTGAGGCGGCTCTGTCCCGACATTTCCTTCTTCCAGCAGGCGACCGAGTTCCCC
GTGCGAGTTTGTGAAAGAGCGCGAGCGAAAGCTGCACGTGCGAG

consensusID : consensus_2173#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [GCAGATCGCCACGAGGTCAAAGCTTACGAAGCAGCGCGACACTGTACAACAGTTTGTCAAGGAAATGGTAATTTCGCCCGGCGAACAGGATGGTCCGGAATGTATCGATCATCCGCTGAGCGACGGTCCGGAAAGCAATTGGAGCACGTTCTTCAGGGATAATGAGGTGCTGCTACAGATCGACAAGGACGTGAGGCGGCTCTGTCCCGACATTTCCTTCTTCCAGCAGGCGACCGAGTTCCCGTGCGAGTTCGTGAAGGAGCGCGAGCGAAAGCTGCACGTGCGAGTCGCTCCCACGACGCTCAGTTCCGGCAACGTGGAGCGGAAAGGTGTCGGTATGACCAAGATCAATCTCATCACGAAACGGGCGACGGAAAGCTACGAAGCGATGGATGCCGGCCACGGAGGCACACTGGCGAAGTGGTCGAACGGATACTGTNTCCCTATACGCGAAGCTTAAAACCCGGCAGGGGCTACGTGCAGGGGCATGAAACGAAATCATCGGGGCCATCTACTACGTGTTCGNNNGTCGATCCGCACCTACGAGTATCGGCCGGTACAGCCGANGCGGACTGCTTACTTCCTGCTTCACCGACGCTCGAT]

[+] EMBL AL696365             [GCAGATCGCCACGAGGTCAAAGCTTACGAAGCAGCGCGACACTGTACAACAGTTTGTCAAGGAAATGGTAATTTCGCCCGGCGAACAGGATGGTCCGGAATGTATCGATCATCCGCTGAGCGACGGTCCGGAAAGCAATTGGAGCACGTTCTTCAGGGATAATGAGGTGCTGCTACAGATCGACAAGGACGTGAGGCGGCTCTGTCCCGACATTTCCTTCTTCCAGCAGGCGACCGAGTTCCCGTGCGAGTTCGTGAAGGAGCGCGAGCGAAAGCTGCACGTGCGAGTCGCTCCCACGACGCTCAGTTCCGGCAACGTGGAGCGGAAAGGTGTCGGTATGACCAAGATCAATCTCATCACGAAACGGGCGACGGAAAGCTACGAAGCGATGGATGCCGGCCACGGAGGCACACTGGCGAAGTGGTCGAACGGATACTGTNTCCCTATACGCGAAGCTTAAAACCCGGCAGGGGCTACGTGCAGGGGCATGAAACGAAATCATCGGGGCCATCTACTACGTGTTCGNNNGTCGATCCGCACCTACGAGTATCGGCCGGTACAGCCGANGCGGACTGCTTACTTCCTGCTTCACCGACGCTCGAT]




>consensus_2173#1
GCAGATCGCCACGAGGTCAAAGCTTACGAAGCAGCGCGACACTGTACAACAGTTTGTCAA
GGAAATGGTAATTTCGCCCGGCGAACAGGATGGTCCGGAATGTATCGATCATCCGCTGAG
CGACGGTCCGGAAAGCAATTGGAGCACGTTCTTCAGGGATAATGAGGTGCTGCTACAGAT
CGACAAGGACGTGAGGCGGCTCTGTCCCGACATTTCCTTCTTCCAGCAGGCGACCGAGTT
CCCGTGCGAGTTCGTGAAGGAGCGCGAGCGAAAGCTGCACGTGCGAGTCGCTCCCACGAC
GCTCAGTTCCGGCAACGTGGAGCGGAAAGGTGTCGGTATGACCAAGATCAATCTCATCAC
GAAACGGGCGACGGAAAGCTACGAAGCGATGGATGCCGGCCACGGAGGCACACTGGCGAA
GTGGTCGAACGGATACTGTNTCCCTATACGCGAAGCTTAAAACCCGGCAGGGGCTACGTG
CAGGGGCATGAAACGAAATCATCGGGGCCATCTACTACGTGTTCGNNNGTCGATCCGCAC
CTACGAGTATCGGCCGGTACAGCCGANGCGGACTGCTTACTTCCTGCTTCACCGACGCTC
GAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2173#0      -------------------------CCGAAATCGTCTGCGAACGATGCAATCTTTTGT-G 34
consensus_2173#1      GCAGATCGCCACGAGGTCAAAGCTTACGAAGCAGCGCG-ACACTGTACAACAGTTTGTCA 59
                                                ****   *   *   **  * ***   *****  

consensus_2173#0      TGATAATAAACGCCGCCTGTAGTGATAAAGTTGGCTTGCATTTTTTTTACACTTTTTTAA 94
consensus_2173#1      AGGAAATGGTAATTTCGCCCGGCGAACAGGATGGTCCGGAATGTATCGATCATCCGCTGA 119
                       *  ***        *     * **  * * ***   * * * * *  *   *    * *

consensus_2173#0      ACTACCCCTAGGAGGGTGGGATCATCAATTTTCGTCGAAGTTTGTGCGTGACGCACGGAG 154
consensus_2173#1      GCGACGGTCCGGAAAGCAATTGGAGCA-CGTTCTTCAGGGATAATGAGGTGC---TGCTA 175
                       * **     ***  *       * **   *** **   * *  ** *   *    *   

consensus_2173#0      CGAATGCGGGCTGGGTGTGTAGTGCTTGACTGGGTGATAACATGTCGTTGTACAAAATAC 214
consensus_2173#1      CAGAT-CGACAAGGACGTGAGGC----GGCTCTGTCCCGACATTTCCTTCTTCCAG---C 227
                      *  ** **    **  ***  *     * **  **    **** ** ** * * *    *

consensus_2173#0      GGGTGGCTGACTTGGAGAACA---TCTTGGAACAGGATGAGATAGATCTGAAAGTGCTCC 271
consensus_2173#1      AGGCGACCGAGTTCCCGTGCGAGTTCGTGAAGGAGCGCGAGCGAAAGCTGCACGTGCGA- 286
                       ** * * ** **   *  *    ** ** *  **   ***  * * *** * ****   

consensus_2173#0      GAAGCTTCTGCTTCAATGGCATACCGGACTGC--AACGGATTTCGAGCGCTGTG-CTGGA 328
consensus_2173#1      GTCGCTCCCACGACGCTCAGTTCCGGCAACGTGGAGCGGAAAGGTGTCGGTATGACCAAG 346
                      *  *** *  *  *  *    * * * *  *   * ****       ** * ** *    

consensus_2173#0      AGCTGCTGCTCGGCTATCTGAACCCCAAAAAGTCAACATGGCCAGCGAAGCTTACGAAGC 388
consensus_2173#1      ATCAATCTCATCACGAAACGGGCGACGGAAAGCTA-CGAAGCGATGGATGCCGGCCACGG 405
                      * *     *    * *   *  *  *  ****  * *   ** *  ** **   * * * 

consensus_2173#0      AGCGCGAACTGTACAAACAGTTTGTCAAGGAAATGGTAATTTCGCCCGGCGAACAGGATG 448
consensus_2173#1      AG-GCACACTGGCGAAGTGGTCGAAC--GGATACTGTNTCCCTATACG-CGAAGCTTAAA 461
                      ** **  ****   **   **    *  *** *  **         ** ****    *  

consensus_2173#0      GCCCGGAATGTATCGATCATCCGCTGAGCGACGGTCCGGAAAGCAATTGGAGCACGTTCT 508
consensus_2173#1      ACCCGGCAGG----GGCTACGTGCAGGGGCATGAAACG-AAATCATCGGGGCCATCTACT 516
                       ***** * *    *   *   ** * *  * *   ** *** **   **  **  * **

consensus_2173#0      TCAGG----GACAATGAGGTGCTGCTACAG--ATCGACAAGGACGTGAGGCGGCTCTGTC 562
consensus_2173#1      ACGTGTTCGNNNGTCGATCCGCACCTACGAGTATCGGCCGGTAC---AGCCGANGCGGAC 573
                       *  *          **   **  ****    **** *  * **   ** **   * * *

consensus_2173#0      CCGACATTTCCTTCTTCCAGCAGGCGACCGAGTTCCCCGTGCGAGTTTGTGAAAGAGCGC 622
consensus_2173#1      TGCTTACTTCCTGCTTC--ACCGACGCTCGAT---------------------------- 603
                           * ***** ****   * * **  ***                             

consensus_2173#0      GAGCGAAAGCTGCACGTGCGAG 644
consensus_2173#1      ----------------------