cluster # 2174

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Anopheles gambiae
cluster # 2174 cluster # 2174 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2174#0 length = 679 sequences # 1

consensus_2174#1 length = 448 sequences # 1

consensusID : consensus_2174#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 679
fasta sequence

                              [ATCGCGCAGAGGTTACCTGACGCCATCTCCCGTGCTATTGATATGGAATCCATCCCACTGCTCGATGGAATCGCGCTGGTGAAGCAGGACAAGGCCGAAAACGTGACCGTCCCGCTGCTGAACGATGCCCGTTCGATGAGCGGCCTGACCACCGTCGACCGTACCCTGCTGGACAAGGTGGAGCAGTTCCTGCGCACCCACGTCGTCCGCTTCGACATGCGCCAGCAGTCGGAGGCGGCCCGCGGCAACAAGCAGAACAAGCACCACCGCTACCTGATCGCCGCCTTCCTGACCGCGATGGGCATCGCTGGCCCGATCGGTCTGAAGGCGCTCGCTGCCATCGCCGGTAAGGCGCTCGTCATCTCGAAGGTTGCGCTCACCATTGCCGGCATTCTGGCGCTGAAGAAAATCTTCGCCCACGATCACCACGAGGAGACGAGCTTCCAGGTGCACGCATCCGGACACGATAACCGACGAACTGCCTACGTGATGCGCCCCTCGAAGGTCGCCGCCCCGGCCAGCGTTGATCCTTACCGGTACTACTACGAGCAGCAGCAGCAGCAGCCCCAGCAGCAGTACGCTGCCCAGATGTAAGCTTTCGGTGCCAAAACAACTGCTCCACTCACCAAGACAACGAAACGGCTGAGTATCGAGACAACGAAAACATATGACCGACGAA]

[+] EMBL AL696369             [ATCGCGCAGAGGTTACCTGACGCCATCTCCCGTGCTATTGATATGGAATCCATCCCACTGCTCGATGGAATCGCGCTGGTGAAGCAGGACAAGGCCGAAAACGTGACCGTCCCGCTGCTGAACGATGCCCGTTCGATGAGCGGCCTGACCACCGTCGACCGTACCCTGCTGGACAAGGTGGAGCAGTTCCTGCGCACCCACGTCGTCCGCTTCGACATGCGCCAGCAGTCGGAGGCGGCCCGCGGCAACAAGCAGAACAAGCACCACCGCTACCTGATCGCCGCCTTCCTGACCGCGATGGGCATCGCTGGCCCGATCGGTCTGAAGGCGCTCGCTGCCATCGCCGGTAAGGCGCTCGTCATCTCGAAGGTTGCGCTCACCATTGCCGGCATTCTGGCGCTGAAGAAAATCTTCGCCCACGATCACCACGAGGAGACGAGCTTCCAGGTGCACGCATCCGGACACGATAACCGACGAACTGCCTACGTGATGCGCCCCTCGAAGGTCGCCGCCCCGGCCAGCGTTGATCCTTACCGGTACTACTACGAGCAGCAGCAGCAGCAGCCCCAGCAGCAGTACGCTGCCCAGATGTAAGCTTTCGGTGCCAAAACAACTGCTCCACTCACCAAGACAACGAAACGGCTGAGTATCGAGACAACGAAAACATATGACCGACGAA]




>consensus_2174#0
ATCGCGCAGAGGTTACCTGACGCCATCTCCCGTGCTATTGATATGGAATCCATCCCACTG
CTCGATGGAATCGCGCTGGTGAAGCAGGACAAGGCCGAAAACGTGACCGTCCCGCTGCTG
AACGATGCCCGTTCGATGAGCGGCCTGACCACCGTCGACCGTACCCTGCTGGACAAGGTG
GAGCAGTTCCTGCGCACCCACGTCGTCCGCTTCGACATGCGCCAGCAGTCGGAGGCGGCC
CGCGGCAACAAGCAGAACAAGCACCACCGCTACCTGATCGCCGCCTTCCTGACCGCGATG
GGCATCGCTGGCCCGATCGGTCTGAAGGCGCTCGCTGCCATCGCCGGTAAGGCGCTCGTC
ATCTCGAAGGTTGCGCTCACCATTGCCGGCATTCTGGCGCTGAAGAAAATCTTCGCCCAC
GATCACCACGAGGAGACGAGCTTCCAGGTGCACGCATCCGGACACGATAACCGACGAACT
GCCTACGTGATGCGCCCCTCGAAGGTCGCCGCCCCGGCCAGCGTTGATCCTTACCGGTAC
TACTACGAGCAGCAGCAGCAGCAGCCCCAGCAGCAGTACGCTGCCCAGATGTAAGCTTTC
GGTGCCAAAACAACTGCTCCACTCACCAAGACAACGAAACGGCTGAGTATCGAGACAACG
AAAACATATGACCGACGAA

consensusID : consensus_2174#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [GGCAGATCGCCACGAGGTGCTAATCGATAAGCATTACAGCAGCTCCAGTGTAAGCAGCAGCATCCAACAGCGGTGGAAGTGCATTCTCAGCCTATCAGTGCGTGTGTCACCAGTTCGAGTGTGTGTGGAATTAGAGAACCCAGCAAAAAAGAACCAAAACCAAAGCAGCCAGAATGTACAGCAGTAGCACCATGTTGAAGTATGTGACGCTTGCCTCGGTCATCGCGACGGCCCTCTGCGCCAGTGCCGGTGTTCGCGGTGCGTCCCGGCAGGAACCGAGCGGCGGCGAGCTGGGCGTACTGCAGAAGGTGTACGATGACTGCCAGGACAAGCAGGACTTCACCGGCATGCCTGAAGGGCAAGGCCCTGACCGCCATCTCCCGTGCTATTGATATGGAATCCATCCCACTGATCGATGGAATCGCGCTGGTAAGCAGGACAAGGGCCG]

[+] EMBL BX466592             [GGCAGATCGCCACGAGGTGCTAATCGATAAGCATTACAGCAGCTCCAGTGTAAGCAGCAGCATCCAACAGCGGTGGAAGTGCATTCTCAGCCTATCAGTGCGTGTGTCACCAGTTCGAGTGTGTGTGGAATTAGAGAACCCAGCAAAAAAGAACCAAAACCAAAGCAGCCAGAATGTACAGCAGTAGCACCATGTTGAAGTATGTGACGCTTGCCTCGGTCATCGCGACGGCCCTCTGCGCCAGTGCCGGTGTTCGCGGTGCGTCCCGGCAGGAACCGAGCGGCGGCGAGCTGGGCGTACTGCAGAAGGTGTACGATGACTGCCAGGACAAGCAGGACTTCACCGGCATGCCTGAAGGGCAAGGCCCTGACCGCCATCTCCCGTGCTATTGATATGGAATCCATCCCACTGATCGATGGAATCGCGCTGGTAAGCAGGACAAGGGCCG]




>consensus_2174#1
GGCAGATCGCCACGAGGTGCTAATCGATAAGCATTACAGCAGCTCCAGTGTAAGCAGCAG
CATCCAACAGCGGTGGAAGTGCATTCTCAGCCTATCAGTGCGTGTGTCACCAGTTCGAGT
GTGTGTGGAATTAGAGAACCCAGCAAAAAAGAACCAAAACCAAAGCAGCCAGAATGTACA
GCAGTAGCACCATGTTGAAGTATGTGACGCTTGCCTCGGTCATCGCGACGGCCCTCTGCG
CCAGTGCCGGTGTTCGCGGTGCGTCCCGGCAGGAACCGAGCGGCGGCGAGCTGGGCGTAC
TGCAGAAGGTGTACGATGACTGCCAGGACAAGCAGGACTTCACCGGCATGCCTGAAGGGC
AAGGCCCTGACCGCCATCTCCCGTGCTATTGATATGGAATCCATCCCACTGATCGATGGA
ATCGCGCTGGTAAGCAGGACAAGGGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2174#0      ATCGCGCAGAGGTTACCTGACGCCATCTCCCGTGCTATTGATATGGAATCCATCCCACTG 60
consensus_2174#1      ------------------------------------------------------------
                                                                                  

consensus_2174#0      CTCGATGGAATCGCGCTGGTGAAGCAGGACAAGGCCGAAAACGTGACCGTCCCGCTGCTG 120
consensus_2174#1      -------------------------------------GGCAGATCGCCA-CGAGGTGCTA 22
                                                              *  *  **  *  * **** 

consensus_2174#0      AACGATGCCCGTTCGATGAGC---GGCCTGACCACCGTCGACCGTACCCTGCTGGACAAG 177
consensus_2174#1      ATCGATAAGCATTACAGCAGCTCCAGTGTAAGCAGCAGCATCCA-ACAGCGGTGGAAGTG 81
                      * ****   * **  *  ***    *  * * ** *  *  **  **   * ****   *

consensus_2174#0      GTGGAGCAGTTCCTGCGCACCCACGTCGTCCGCTTCGACATGCGCCAGCAGTCGGAGGCG 237
consensus_2174#1      CATTCTCAGCCTATCAGTGCGTGTGTCACCAGTTCGAGTGTGTGT--GGAATTAGAGAAC 139
                            ***    *  *  *    ***  * * *      ** *   * * *  ***   

consensus_2174#0      GCCCGCGGCAACAAGCAGAACAAGCACCACCGCTACCTG-ATCGCCGCCTTCCTGACCGC 296
consensus_2174#1      CCAGCAAAAAAGAACCAAAACCAAAGCAGCCAGAATGTACAGCAGTAGCACCATG-TTGA 198
                       *       ** ** ** *** *   *  **   *  *  * *     *  * **   * 

consensus_2174#0      GATGGGCATCGCTGGCC-CGATCGGTCTGAAGGCGCTCGCTGCCATCGCCGGTAAGGCGC 355
consensus_2174#1      AGTATGTGACGCTTGCCTCGGTCATCGCGACGGCCCTCTGCGCCAGTGCCGGTGTT-CGC 257
                        *  *   **** *** ** **     ** *** ***   ****  ******    ***

consensus_2174#0      TCGTCATCTCGAAGGTTGCGCTCACCATTGCCGGCATTCTGGCGCTGAAGAAAATCTTCG 415
consensus_2174#1      GGTGCGTCCCGGCAG--GAACCGAGCGGCGGCGAGCTGGGCGTACTGCAGAAGGTGTACG 315
                          * ** **   *  *  *  * *   * **   *    *  *** ****  * * **

consensus_2174#0      CCCACGATCACCACGAGGAGACGAGCTTCCAGGTGCACGCATCCGGACACGATAACCGAC 475
consensus_2174#1      ---ATGACTGCCAGGACAAG-CAGGACTTCACCGGCATGCCTGAAGGGCAAGGCCCTGAC 371
                         * **   *** **  ** *  *  * **   *** ** *   *         * ***

consensus_2174#0      GAACTGCCTACGTGATGCGCCCCTCGAAGGTCGCCGCCCCGGCCAGCGTTGATCCTTACC 535
consensus_2174#1      CGCCATCTCCCGTGCTAT-TGATATGGAATCCATCCCACTGATCGATG--GAATCGCGCT 428
                         *  *   **** *         * *   *  * * * *  *   *  **  *   * 

consensus_2174#0      GGTACTACTACGAGCAGCAGCAGCAGCAGCCCCAGCAGCAGTACGCTGCCCAGATGTAAG 595
consensus_2174#1      GGTA--AGCA-GGACAAGGGCCG------------------------------------- 448
                      ****  *  * *  **   ** *                                     

consensus_2174#0      CTTTCGGTGCCAAAACAACTGCTCCACTCACCAAGACAACGAAACGGCTGAGTATCGAGA 655
consensus_2174#1      ------------------------------------------------------------
                                                                                  

consensus_2174#0      CAACGAAAACATATGACCGACGAA 679
consensus_2174#1      ------------------------