cluster # 2184

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Anopheles gambiae
cluster # 2184 cluster # 2184 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2184#0 length = 627 sequences # 1

consensus_2184#1 length = 576 sequences # 1

consensusID : consensus_2184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGAAAAACCAAGCGTCCGCGTCGATCCTAAACGCTACCGGAGATCCGTAACATTTTGTTCGTTCGGTTCGATTTCTCGTTTCGGTTTGGGTGGATGTTATAGCAAACAGGCTACCTTCGGTTTCTGCTTTCTGGTTGACGCTCAGTTCTGTTGTCCTCGTAGCCGTATAGTTTGCCTTCCCTTTTTGGATTACCAGCAAAACACCAGCAACACCAGCCGAGAGACAGCGCGGAAACAAATATATATTTGACTTACTGTTCATCTATAAAGCGTTCGCCTAAGACGTGTGTTATCATTATCACTCGCGATTGTTCTGCGTTGTGCACCGAAAGTCATCAACACCGCGTTGAACGAGTCACACAAGCGTGAGTGAAGTGAGTAATCGAACGAATCGATTGTTGGAAGAAGAAAAAAAAGCCCAAAAAGTGCGCCGATGATTCATAGCCGTCTGCTTGCGGGCTGGAACCACAGTGGTGATTCAGTTTTCATCATCCATAGGCAAGTGGTTGCGAAGTAGGCGCGCGCACTATTGTGTGTCGTGTCAGTGGAAGTGGATCATCGTAGCGAAGACGGCGAAACGGAAACACGGCTAAATCACGTCA]

[+] EMBL BM578612             [CCGCGGACGCGTGGGCGGACGCGTGGGAAAAACCAAGCGTCCGCGTCGATCCTAAACGCTACCGGAGATCCGTAACATTTTGTTCGTTCGGTTCGATTTCTCGTTTCGGTTTGGGTGGATGTTATAGCAAACAGGCTACCTTCGGTTTCTGCTTTCTGGTTGACGCTCAGTTCTGTTGTCCTCGTAGCCGTATAGTTTGCCTTCCCTTTTTGGATTACCAGCAAAACACCAGCAACACCAGCCGAGAGACAGCGCGGAAACAAATATATATTTGACTTACTGTTCATCTATAAAGCGTTCGCCTAAGACGTGTGTTATCATTATCACTCGCGATTGTTCTGCGTTGTGCACCGAAAGTCATCAACACCGCGTTGAACGAGTCACACAAGCGTGAGTGAAGTGAGTAATCGAACGAATCGATTGTTGGAAGAAGAAAAAAAAGCCCAAAAAGTGCGCCGATGATTCATAGCCGTCTGCTTGCGGGCTGGAACCACAGTGGTGATTCAGTTTTCATCATCCATAGGCAAGTGGTTGCGAAGTAGGCGCGCGCACTATTGTGTGTCGTGTCAGTGGAAGTGGATCATCGTAGCGAAGACGGCGAAACGGAAACACGGCTAAATCACGTCA]




>consensus_2184#0
CCGCGGACGCGTGGGCGGACGCGTGGGAAAAACCAAGCGTCCGCGTCGATCCTAAACGCT
ACCGGAGATCCGTAACATTTTGTTCGTTCGGTTCGATTTCTCGTTTCGGTTTGGGTGGAT
GTTATAGCAAACAGGCTACCTTCGGTTTCTGCTTTCTGGTTGACGCTCAGTTCTGTTGTC
CTCGTAGCCGTATAGTTTGCCTTCCCTTTTTGGATTACCAGCAAAACACCAGCAACACCA
GCCGAGAGACAGCGCGGAAACAAATATATATTTGACTTACTGTTCATCTATAAAGCGTTC
GCCTAAGACGTGTGTTATCATTATCACTCGCGATTGTTCTGCGTTGTGCACCGAAAGTCA
TCAACACCGCGTTGAACGAGTCACACAAGCGTGAGTGAAGTGAGTAATCGAACGAATCGA
TTGTTGGAAGAAGAAAAAAAAGCCCAAAAAGTGCGCCGATGATTCATAGCCGTCTGCTTG
CGGGCTGGAACCACAGTGGTGATTCAGTTTTCATCATCCATAGGCAAGTGGTTGCGAAGT
AGGCGCGCGCACTATTGTGTGTCGTGTCAGTGGAAGTGGATCATCGTAGCGAAGACGGCG
AAACGGAAACACGGCTAAATCACGTCA

consensusID : consensus_2184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [CCGAGGTTNCTGCGTCGATCCTAAACGCCACCGGAGATCGTAACNTTTTGTTCGTTCGGTTCGATTTCTCGTTCGGTTTGGGTGGATGTTATAGCAAACAGGCGTACCTNTCGGTTTCTGCTTTCTGGTTGACGCTCAGTTCTGTTGTCCTCGTAGCCGTATAGTTTGCCTTCCCTATATATGTGGATTACCAGGCAAAACACCAGCAACACCAGACGAGAGACAGCGCGGAAACAAATACTACTACTACTGACTTACTGTTCATCTATACAAGCGTTCGCCTAAGACGTGTGTTATCATCATCACTCGCGATAGTTCTGCGTTGTGCACCGAGAAGTCATCAAACACCGCGTTGAACCGGAGTCACACAAGCTATGAGTGAAGTGAGTAATCGCAACGAATCGACTTGTNGGNAGAAGCAAAAACAAAGCCCAAAAAGTGCGCCGATGATTCATAGCCGTTACTGCTTGCGGGCTGGAACCACAGTGGTGATTCCAGTNTTACCATCATCCATAGGCAAGTGGTTAGCGANAGTAGGCGCTGCGCACTATGTGTGTCGTGTCAGTGGAAGTGGAT]

[+] EMBL AL696429             [CCGAGGTTNCTGCGTCGATCCTAAACGCCACCGGAGATCGTAACNTTTTGTTCGTTCGGTTCGATTTCTCGTTCGGTTTGGGTGGATGTTATAGCAAACAGGCGTACCTNTCGGTTTCTGCTTTCTGGTTGACGCTCAGTTCTGTTGTCCTCGTAGCCGTATAGTTTGCCTTCCCTATATATGTGGATTACCAGGCAAAACACCAGCAACACCAGACGAGAGACAGCGCGGAAACAAATACTACTACTACTGACTTACTGTTCATCTATACAAGCGTTCGCCTAAGACGTGTGTTATCATCATCACTCGCGATAGTTCTGCGTTGTGCACCGAGAAGTCATCAAACACCGCGTTGAACCGGAGTCACACAAGCTATGAGTGAAGTGAGTAATCGCAACGAATCGACTTGTNGGNAGAAGCAAAAACAAAGCCCAAAAAGTGCGCCGATGATTCATAGCCGTTACTGCTTGCGGGCTGGAACCACAGTGGTGATTCCAGTNTTACCATCATCCATAGGCAAGTGGTTAGCGANAGTAGGCGCTGCGCACTATGTGTGTCGTGTCAGTGGAAGTGGAT]




>consensus_2184#1
CCGAGGTTNCTGCGTCGATCCTAAACGCCACCGGAGATCGTAACNTTTTGTTCGTTCGGT
TCGATTTCTCGTTCGGTTTGGGTGGATGTTATAGCAAACAGGCGTACCTNTCGGTTTCTG
CTTTCTGGTTGACGCTCAGTTCTGTTGTCCTCGTAGCCGTATAGTTTGCCTTCCCTATAT
ATGTGGATTACCAGGCAAAACACCAGCAACACCAGACGAGAGACAGCGCGGAAACAAATA
CTACTACTACTGACTTACTGTTCATCTATACAAGCGTTCGCCTAAGACGTGTGTTATCAT
CATCACTCGCGATAGTTCTGCGTTGTGCACCGAGAAGTCATCAAACACCGCGTTGAACCG
GAGTCACACAAGCTATGAGTGAAGTGAGTAATCGCAACGAATCGACTTGTNGGNAGAAGC
AAAAACAAAGCCCAAAAAGTGCGCCGATGATTCATAGCCGTTACTGCTTGCGGGCTGGAA
CCACAGTGGTGATTCCAGTNTTACCATCATCCATAGGCAAGTGGTTAGCGANAGTAGGCG
CTGCGCACTATGTGTGTCGTGTCAGTGGAAGTGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2184#0      CCGCGGACGCGTGGGCGGACGCGTGGGAAAAACCAAGCGTCCGCGTCGATCCTAAACGCT 60
consensus_2184#1      -------------------------------CCGAGGTTNCTGCGTCGATCCTAAACGCC 29
                                                      * * *   * ***************** 

consensus_2184#0      ACCGGAGATCCGTAACATTTTGTTCGTTCGGTTCGATTTCTCGTTTCGGTTTGGGTGGAT 120
consensus_2184#1      ACCGGAGATC-GTAACNTTTTGTTCGTTCGGTTCGATTTCTCGTT-CGGTTTGGGTGGAT 87
                      ********** ***** **************************** **************

consensus_2184#0      GTTATAGCAAACAGGC-TACCTT-CGGTTTCTGCTTTCTGGTTGACGCTCAGTTCTGTTG 178
consensus_2184#1      GTTATAGCAAACAGGCGTACCTNTCGGTTTCTGCTTTCTGGTTGACGCTCAGTTCTGTTG 147
                      **************** *****  ************************************

consensus_2184#0      TCCTCGTAGCCGTATAGTTTGCCTTCCCTTTTT----GGATTACCAG-CAAAACACCAGC 233
consensus_2184#1      TCCTCGTAGCCGTATAGTTTGCCTTCCCTATATATGTGGATTACCAGGCAAAACACCAGC 207
                      ***************************** * *    ********** ************

consensus_2184#0      AACACCAGCCGAGAGACAGCGCGGAAACAAATA----TATATTTGACTTACTGTTCATCT 289
consensus_2184#1      AACACCAGACGAGAGACAGCGCGGAAACAAATACTACTACTACTGACTTACTGTTCATCT 267
                      ******** ************************    **    *****************

consensus_2184#0      ATA-AAGCGTTCGCCTAAGACGTGTGTTATCATTATCACTCGCGATTGTTCTGCGTTGTG 348
consensus_2184#1      ATACAAGCGTTCGCCTAAGACGTGTGTTATCATCATCACTCGCGATAGTTCTGCGTTGTG 327
                      *** ***************************** ************ *************

consensus_2184#0      CACCGA-AAGTCATCAA-CACCGCGTTGAAC--GAGTCACACAAGC-GTGAGTGAAGTGA 403
consensus_2184#1      CACCGAGAAGTCATCAAACACCGCGTTGAACCGGAGTCACACAAGCTATGAGTGAAGTGA 387
                      ****** ********** *************  *************  ************

consensus_2184#0      GTAATCG-AACGAATCGA-TTGTTGGAAGAAGAAAAAA--AAGCCCAAAAAGTGCGCCGA 459
consensus_2184#1      GTAATCGCAACGAATCGACTTGTNGGNAGAAGCAAAAACAAAGCCCAAAAAGTGCGCCGA 447
                      ******* ********** **** ** ***** *****  ********************

consensus_2184#0      TGATTCATAGCCGT--CTGCTTGCGGGCTGGAACCACAGTGGTGATTC-AGTTTT--CAT 514
consensus_2184#1      TGATTCATAGCCGTTACTGCTTGCGGGCTGGAACCACAGTGGTGATTCCAGTNTTACCAT 507
                      **************  ******************************** *** **  ***

consensus_2184#0      CATCCATAGGCAAGTGGTT-GCGAA-GTAGGCGC-GCGCACTATTGTGTGTCGTGTCAGT 571
consensus_2184#1      CATCCATAGGCAAGTGGTTAGCGANAGTAGGCGCTGCGCACTAT-GTGTGTCGTGTCAGT 566
                      ******************* ****  ******** ********* ***************

consensus_2184#0      GGAAGTGGATCATCGTAGCGAAGACGGCGAAACGGAAACACGGCTAAATCACGTCA 627
consensus_2184#1      GGAAGTGGAT---------------------------------------------- 576
                      **********