These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1125 fasta sequence [ANCACCAGCAGATACCCGCTTTAGCACAGAAATTTTATCCCCAAAATAACTCTTCCGTACGCGCATGCAGTGGACGAGCGTTTGTGTTGAGCCGTTCGAACTGTTGTCTATTGACCGGGGACTAGAATCAAGTGTATTGTGTGCTGNACTAACGGACGGGGCCGTGATTTTTATTCCTTTCTTGGAAGCAAACGAAATATTAAAACATCATCCAACGGAAAGGACCATGGCGAAACAGTGAAGCCAATCTTGGACCACAACCAGGAACGGGGCAGNCAGGAACCCAGGATTGTAATGCAAGGATTACCGGGCTGCTGGAAAAGGTTCAAACGGCATTCGGAGCCAGCCCCTAAGACTTAATNTGGTCCAGACTNTTGGGGNCACAAGCACTGTGTGCACACAATTGNANACAAAGGCCCTCGGGTACTTCACAAAAATTNCCAACGTTCCTAACGTTANTCTNCGGTTGGTTCCCGGACTTAATATATTCTTAAGGGAACACCTTGGCNGGCCCACAAGGTGGAAGGTATCTTCAAAGCGGATTGGGTGAACCNGCAACAAAANGGGCACACCATTGGCCCCATACCTGGCATTCCTCGGGGGNATTGACAAAGGACAAAACCTTTACCAGGCACCTTCCCAAAAGNATATGGTAGGGCCGACANACTATCCGCAACAGGNACACTTCAANCATNTACAACCNGAATACACAAAGAGAAAGCGGAATTACTTGAACACGGAAAGAAAGACCANGTGCCTNAAACATAACCAGTAANNATTGTNACCNTGATCCCCGTCACACAANAGCAANACACNGCAAACCCGCACAAAACANCCGCCAACCCGAGAATAGGGGGACNCCGCNCCACCAAACAAAGGCCCTNAAGAACCCCCGNGAAACNCCANACAAAGACAGACNCACACCCACCNAAAACCACNCGCCAANGAACNNAACAACANGACATAAACGGGACCACACGNACGAGAAACCCAANAACACGACACTGNCCGGAACCAACACCANCCGCACNACCCGGACCATAAAAACGCGCCCNACNCNAACCNCGACAGAGCAACGCACGNANCNCNACACACAGACACGACAAANNCGCGCANACCAGCCCA] [+] EMBL AL696486 [ANCACCAGCAGATACCCGCTTTAGCACAGAAATTTTATCCCCAAAATAACTCTTCCGTACGCGCATGCAGTGGACGAGCGTTTGTGTTGAGCCGTTCGAACTGTTGTCTATTGACCGGGGACTAGAATCAAGTGTATTGTGTGCTGNACTAACGGACGGGGCCGTGATTTTTATTCCTTTCTTGGAAGCAAACGAAATATTAAAACATCATCCAACGGAAAGGACCATGGCGAAACAGTGAAGCCAATCTTGGACCACAACCAGGAACGGGGCAGNCAGGAACCCAGGATTGTAATGCAAGGATTACCGGGCTGCTGGAAAAGGTTCAAACGGCATTCGGAGCCAGCCCCTAAGACTTAATNTGGTCCAGACTNTTGGGGNCACAAGCACTGTGTGCACACAATTGNANACAAAGGCCCTCGGGTACTTCACAAAAATTNCCAACGTTCCTAACGTTANTCTNCGGTTGGTTCCCGGACTTAATATATTCTTAAGGGAACACCTTGGCNGGCCCACAAGGTGGAAGGTATCTTCAAAGCGGATTGGGTGAACCNGCAACAAAANGGGCACACCATTGGCCCCATACCTGGCATTCCTCGGGGGNATTGACAAAGGACAAAACCTTTACCAGGCACCTTCCCAAAAGNATATGGTAGGGCCGACANACTATCCGCAACAGGNACACTTCAANCATNTACAACCNGAATACACAAAGAGAAAGCGGAATTACTTGAACACGGAAAGAAAGACCANGTGCCTNAAACATAACCAGTAANNATTGTNACCNTGATCCCCGTCACACAANAGCAANACACNGCAAACCCGCACAAAACANCCGCCAACCCGAGAATAGGGGGACNCCGCNCCACCAAACAAAGGCCCTNAAGAACCCCCGNGAAACNCCANACAAAGACAGACNCACACCCACCNAAAACCACNCGCCAANGAACNNAACAACANGACATAAACGGGACCACACGNACGAGAAACCCAANAACACGACACTGNCCGGAACCAACACCANCCGCACNACCCGGACCATAAAAACGCGCCCNACNCNAACCNCGACAGAGCAACGCACGNANCNCNACACACAGACACGACAAANNCGCGCANACCAGCCCA] consensusID : consensus_2199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [CCGCTGAATGCTGCGCACAGCAAAATTTTATCCAAAATAACCTCTTCCGACCGTGCAGTGCAGTGGGCGAGCGTTTGTGTTGAGCCGTTCGAACTGTTGTCTATTGACCGGCACTAGGAATCAAGTGTATAGTGTGCTGTACTACCGCACGGGGTCGTGATTTTTATTCCTTTCTGCAAGCAAAAGCAATATTAAAACATCATCAAACGAAGCGACATGGCAAACAGTGAAGCAATTCTGGACACACAGACGGCCACCCAGACCCAGATGACGCAAGATACGGCGCTGGAAAGTCAACCGATCGAGCACCCTAGCTATGGCCAGCTGCTGGGCAAGCATGTGAAAATGAAAAGCCTCGACCTGCGCCACAGTGAGTTTAAGGTGGGACGAGAAGGCACATGCCATCTGATCTTGGATGAAGACAACCTTCCGCCCTCCAAGTTGTGCCGAATTTCGAAGCACCACTTCACGATCAAGAAGGATCTGAACGACACAACCAGCCCTACCTACATACATGACCATTCCCGAAACGGAACGTACGTAAACGGGCGACTGATTGGGCCGAACAAATGCATGATCCTGCAAGCACAACGATATCATCTCGATCGCGGGCGTCAGCATACGGGCCTTCGTGTACTACGATCTGCGGTACAGCA] [+] EMBL BM602168 [CCGCTGAATGCTGCGCACAGCAAAATTTTATCCAAAATAACCTCTTCCGACCGTGCAGTGCAGTGGGCGAGCGTTTGTGTTGAGCCGTTCGAACTGTTGTCTATTGACCGGCACTAGGAATCAAGTGTATAGTGTGCTGTACTACCGCACGGGGTCGTGATTTTTATTCCTTTCTGCAAGCAAAAGCAATATTAAAACATCATCAAACGAAGCGACATGGCAAACAGTGAAGCAATTCTGGACACACAGACGGCCACCCAGACCCAGATGACGCAAGATACGGCGCTGGAAAGTCAACCGATCGAGCACCCTAGCTATGGCCAGCTGCTGGGCAAGCATGTGAAAATGAAAAGCCTCGACCTGCGCCACAGTGAGTTTAAGGTGGGACGAGAAGGCACATGCCATCTGATCTTGGATGAAGACAACCTTCCGCCCTCCAAGTTGTGCCGAATTTCGAAGCACCACTTCACGATCAAGAAGGATCTGAACGACACAACCAGCCCTACCTACATACATGACCATTCCCGAAACGGAACGTACGTAAACGGGCGACTGATTGGGCCGAACAAATGCATGATCCTGCAAGCACAACGATATCATCTCGATCGCGGGCGTCAGCATACGGGCCTTCGTGTACTACGATCTGCGGTACAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2199#0 ANCACCAGCAGATACCCGCTTTAGCACAGAAATTTTATCCCCAAAATAAC-TCTTCCGTA 59 consensus_2199#1 ----CCGCTGAATGCTGCGCACAGCA---AAATTTTATC--CAAAATAACCTCTTCCGAC 51 ** ** * **** ********** ********* ******* consensus_2199#0 CGCGCA-TGCAGTGGACGAGCGTTTGTGTTGAGCCGTTCGAACTGTTGTCTATTGACCGG 118 consensus_2199#1 CGTGCAGTGCAGTGGGCGAGCGTTTGTGTTGAGCCGTTCGAACTGTTGTCTATTGACCGG 111 ** *** ******** ******************************************** consensus_2199#0 GGACTAGAATCAAGTGTATTGTGTGCTGNACTAACGGACGGGGCCGTGATTTTTATTCCT 178 consensus_2199#1 CACTAGGAATCAAGTGTATAGTGTGCTGTACTACCGCACGGGGTCGTGATTTTTATTCCT 171 ************* ******** **** ** ****** **************** consensus_2199#0 TTCTTGGAAGCAAACGAAATATTAAAACATCATCCAACGGAAAGGACCATGGCGAAACAG 238 consensus_2199#1 TTCT-GCAAGCAAAAGCAATATTAAAACATCATCAAACGAAGCGA--CATGGC-AAACAG 227 **** * ******* * ***************** **** * * ****** ****** consensus_2199#0 TGAAGCCAATCTTGGACCACAACCAGGAACGGGGCAGNCAGGAACCCAGGATT--GTAAT 296 consensus_2199#1 TGAAGCAATTCTGGACACACAGACGGCCACCCAGACCCAGATGACGCAAGATACGGCGCT 287 ****** * *** * **** * * ** * ** ** *** * * consensus_2199#0 GCAAGGATTACCGGGCTGCTGGAAAAGGTTCAAACGGCATTCGGAGCCAGCCCCTAAGAC 356 consensus_2199#1 GGAAAGTCAACCGATCGAGCACCCTAGCTATGGCCAGC-TGCTGGGCAAGCATGTGAAAA 346 * ** * **** * ** * * ** * * * ** *** * * * consensus_2199#0 TTAATNTGGTCCAGACTNTTGGGGNCACAAGCACTGTGTGCACACAATTGNANACAAAGG 416 consensus_2199#1 TGAAAA--GCCTCGACCT---GCGCCACAGTGAGTTTAAGGTGGGACGAGAAGGCACATG 401 * ** * * *** * * **** * * * * * * * ** * * consensus_2199#0 CCCTCGGGTACTTCACAAAAATTNCCAACGTTCCTAACGTTANTCTNCGGTTGGTTCCCG 476 consensus_2199#1 CCATCTGATCTTGGATGAAGA----CAACCTTCCGCCCTCCAAGTTGTGCCGAATTTCGA 457 ** ** * * * * ** * **** **** * * * * ** * consensus_2199#0 GACTTAATATATTCTTAAGGGAACACCTTGGCNGGCCCACAAGGTGGAAGGTATCTTCAA 536 consensus_2199#1 AGCACCACTTCACGATCAAGAAGGATCTGAACGACACAACCAGCCCTACC-TACATACAT 516 * * * * * * * * ** * * ** ** * ** * ** consensus_2199#0 AGCGGATTGGGTGA--ACCNGCAACAAAANGGGCACACCATTGGCCCCATACCTGGCATT 594 consensus_2199#1 GACCATTCCCGAAACGGAACGTACGTAAACGGGCGACTGATTGGGCCGAACAAATGCATG 576 * * * * * * *** **** ***** ** * **** consensus_2199#0 CCTCGGGGGNATTGACAAAGGACAAAACCTTTACCAGGCACCTTCCCAAAAGNATATGGT 654 consensus_2199#1 ATCCTGCAAGCACAAC----GATATCATCTCGATCGCGGGCGTCAGCATACGGGCCTTCG 632 * * ** ** * * ** * * * * * ** * * * consensus_2199#0 AGGGCCGACANACTATCCGCAACAGGNACACTTCAANCATNTACAACCNGAATACACAAA 714 consensus_2199#1 TGTAC---TACGATCTGCGGTACAGCA--------------------------------- 656 * * * * * ** **** consensus_2199#0 GAGAAAGCGGAATTACTTGAACACGGAAAGAAAGACCANGTGCCTNAAACATAACCAGTA 774 consensus_2199#1 ------------------------------------------------------------ consensus_2199#0 ANNATTGTNACCNTGATCCCCGTCACACAANAGCAANACACNGCAAACCCGCACAAAACA 834 consensus_2199#1 ------------------------------------------------------------ consensus_2199#0 NCCGCCAACCCGAGAATAGGGGGACNCCGCNCCACCAAACAAAGGCCCTNAAGAACCCCC 894 consensus_2199#1 ------------------------------------------------------------ consensus_2199#0 GNGAAACNCCANACAAAGACAGACNCACACCCACCNAAAACCACNCGCCAANGAACNNAA 954 consensus_2199#1 ------------------------------------------------------------ consensus_2199#0 CAACANGACATAAACGGGACCACACGNACGAGAAACCCAANAACACGACACTGNCCGGAA 1014 consensus_2199#1 ------------------------------------------------------------ consensus_2199#0 CCAACACCANCCGCACNACCCGGACCATAAAAACGCGCCCNACNCNAACCNCGACAGAGC 1074 consensus_2199#1 ------------------------------------------------------------ consensus_2199#0 AACGCACGNANCNCNACACACAGACACGACAAANNCGCGCANACCAGCCCA 1125 consensus_2199#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||