cluster # 2229

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Anopheles gambiae
cluster # 2229 cluster # 2229 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2229#0 length = 537 sequences # 1

consensus_2229#1 length = 470 sequences # 1

consensusID : consensus_2229#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence

                              [CCGAGGTTTATACGGAGAAGATCGACGATCCACGAACAGGGTGTTCAATTGTTTATGGTTATAGTGCTATTGTGCATCTGTGGTACCACGATCGTTAAAGTGGCGTGCAACAGAACGAACTCGAAGCTCACTGCCATTCCCATCCCCAGGCATGATGCACCGAGAACAGTTCGTGAGTTGCTCGCCAAGGTCGTAAACGGGCAGACAGCTACAACAGGGCAATTCCCATGGAAGCGTCAATTCGGGCAGCTCTTGGCCGTTCTGTAACGGTGTGTGGCGGTTCGCTGATCGAGGCCCAGTGGGTTCTTACAGCAGCTCACTGTGCCAACGACTATACCGTGTTCCAGATAGGACTCGGCTCAATCCATCTGAATATGGCACGACTTACCATGTCCACTGTCATCAAGTTTGTGCATCCTGAGTTTGATCCGTGGAAGGTTGACGAATGACGTTGCCCTGATCCGACTGCGCTTCACCAGTGCCTTACAGTCTAAGAGATCTATCCAGGTAAAGCTACCGATCAATTTNACCACCCAC]

[+] EMBL AL929981             [CCGAGGTTTATACGGAGAAGATCGACGATCCACGAACAGGGTGTTCAATTGTTTATGGTTATAGTGCTATTGTGCATCTGTGGTACCACGATCGTTAAAGTGGCGTGCAACAGAACGAACTCGAAGCTCACTGCCATTCCCATCCCCAGGCATGATGCACCGAGAACAGTTCGTGAGTTGCTCGCCAAGGTCGTAAACGGGCAGACAGCTACAACAGGGCAATTCCCATGGAAGCGTCAATTCGGGCAGCTCTTGGCCGTTCTGTAACGGTGTGTGGCGGTTCGCTGATCGAGGCCCAGTGGGTTCTTACAGCAGCTCACTGTGCCAACGACTATACCGTGTTCCAGATAGGACTCGGCTCAATCCATCTGAATATGGCACGACTTACCATGTCCACTGTCATCAAGTTTGTGCATCCTGAGTTTGATCCGTGGAAGGTTGACGAATGACGTTGCCCTGATCCGACTGCGCTTCACCAGTGCCTTACAGTCTAAGAGATCTATCCAGGTAAAGCTACCGATCAATTTNACCACCCAC]




>consensus_2229#0
CCGAGGTTTATACGGAGAAGATCGACGATCCACGAACAGGGTGTTCAATTGTTTATGGTT
ATAGTGCTATTGTGCATCTGTGGTACCACGATCGTTAAAGTGGCGTGCAACAGAACGAAC
TCGAAGCTCACTGCCATTCCCATCCCCAGGCATGATGCACCGAGAACAGTTCGTGAGTTG
CTCGCCAAGGTCGTAAACGGGCAGACAGCTACAACAGGGCAATTCCCATGGAAGCGTCAA
TTCGGGCAGCTCTTGGCCGTTCTGTAACGGTGTGTGGCGGTTCGCTGATCGAGGCCCAGT
GGGTTCTTACAGCAGCTCACTGTGCCAACGACTATACCGTGTTCCAGATAGGACTCGGCT
CAATCCATCTGAATATGGCACGACTTACCATGTCCACTGTCATCAAGTTTGTGCATCCTG
AGTTTGATCCGTGGAAGGTTGACGAATGACGTTGCCCTGATCCGACTGCGCTTCACCAGT
GCCTTACAGTCTAAGAGATCTATCCAGGTAAAGCTACCGATCAATTTNACCACCCAC

consensusID : consensus_2229#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [TATNATAGCTCATGGGCCAAAGAAATCGCCCAGGTGTACATTCGACACATGGTGCCAGCAGTATGCAGATGGTATACCGCGCAGAAGATCGACGATCCACGAACAGGGTGGGCACTTGTTTATGGTTATAGTGCTATTGTGCATCTGTGGTACCACGATCGTTAAGTGGCGTGCAACAGAACGAACTCGAAGTCACTGCATTCCATCCCAGGCATGATGACCGAGAACAGTCGTGAGTTGTCGCCNAGGTCGTAAACGGGCAGACAGGTAGNACAGGGNAATTCCCATGGAAAGCGTCAATTCGGGCAGCTCTTGGCGNTCTGTAACCGGTGTGTGGCGGTTCGCTGATCGAGGGCCAGTGGGTTCTTACAGGCAGCGTCAACTGTGCCAACGGACTATACCGTGTTCCAGATAGGACTCTGGTCAATCCATCTGATATGGACGCAGTTACCATTGTCCCCTTGGCATCA]

[+] EMBL AL696635             [TATNATAGCTCATGGGCCAAAGAAATCGCCCAGGTGTACATTCGACACATGGTGCCAGCAGTATGCAGATGGTATACCGCGCAGAAGATCGACGATCCACGAACAGGGTGGGCACTTGTTTATGGTTATAGTGCTATTGTGCATCTGTGGTACCACGATCGTTAAGTGGCGTGCAACAGAACGAACTCGAAGTCACTGCATTCCATCCCAGGCATGATGACCGAGAACAGTCGTGAGTTGTCGCCNAGGTCGTAAACGGGCAGACAGGTAGNACAGGGNAATTCCCATGGAAAGCGTCAATTCGGGCAGCTCTTGGCGNTCTGTAACCGGTGTGTGGCGGTTCGCTGATCGAGGGCCAGTGGGTTCTTACAGGCAGCGTCAACTGTGCCAACGGACTATACCGTGTTCCAGATAGGACTCTGGTCAATCCATCTGATATGGACGCAGTTACCATTGTCCCCTTGGCATCA]




>consensus_2229#1
TATNATAGCTCATGGGCCAAAGAAATCGCCCAGGTGTACATTCGACACATGGTGCCAGCA
GTATGCAGATGGTATACCGCGCAGAAGATCGACGATCCACGAACAGGGTGGGCACTTGTT
TATGGTTATAGTGCTATTGTGCATCTGTGGTACCACGATCGTTAAGTGGCGTGCAACAGA
ACGAACTCGAAGTCACTGCATTCCATCCCAGGCATGATGACCGAGAACAGTCGTGAGTTG
TCGCCNAGGTCGTAAACGGGCAGACAGGTAGNACAGGGNAATTCCCATGGAAAGCGTCAA
TTCGGGCAGCTCTTGGCGNTCTGTAACCGGTGTGTGGCGGTTCGCTGATCGAGGGCCAGT
GGGTTCTTACAGGCAGCGTCAACTGTGCCAACGGACTATACCGTGTTCCAGATAGGACTC
TGGTCAATCCATCTGATATGGACGCAGTTACCATTGTCCCCTTGGCATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2229#0      ------------------------------------------------------------
consensus_2229#1      TATNATAGCTCATGGGCCAAAGAAATCGCCCAGGTGTACATTCGACACATGGTGCCAGCA 60
                                                                                  

consensus_2229#0      -----CCGA-GGTTTAT-ACGGAGAAGATCGACGATCCACGAACAGGGTGTTCAATTGTT 53
consensus_2229#1      GTATGCAGATGGTATACCGCGCAGAAGATCGACGATCCACGAACAGGGTGGGCACTTGTT 120
                           * ** *** **   ** ****************************  ** *****

consensus_2229#0      TATGGTTATAGTGCTATTGTGCATCTGTGGTACCACGATCGTTAAAGTGGCGTGCAACAG 113
consensus_2229#1      TATGGTTATAGTGCTATTGTGCATCTGTGGTACCACGATCGTTAA-GTGGCGTGCAACAG 179
                      ********************************************* **************

consensus_2229#0      AACGAACTCGAAGCTCACTGCCATTCCCATCCCCAGGCATGATGCACCGAGAACAGTTCG 173
consensus_2229#1      AACGAACTCGAAG-TCACTGC-ATTCC--ATCCCAGGCATGATG-ACCGAGAACAGT-CG 233
                      ************* ******* *****    ************* ************ **

consensus_2229#0      TGAGTTGCTCGCCAAGGTCGTAAACGGGCAGACAGCTACAACAGGGCAATTCCCATGGAA 233
consensus_2229#1      TGAGTTG-TCGCCNAGGTCGTAAACGGGCAGACAGGTAGNACAGGGNAATTCCCATGGAA 292
                      ******* ***** ********************* **  ****** *************

consensus_2229#0      -GCGTCAATTCGGGCAGCTCTTGGCCGTTCTGTAAC-GGTGTGTGGCGGTTCGCTGATCG 291
consensus_2229#1      AGCGTCAATTCGGGCAGCTCTTGGC-GNTCTGTAACCGGTGTGTGGCGGTTCGCTGATCG 351
                       ************************ * ******** ***********************

consensus_2229#0      AGGCCCAGTGGGTTCTTACAG-CAGCTC--ACTGTGCCAACG-ACTATACCGTGTTCCAG 347
consensus_2229#1      AGGGCCAGTGGGTTCTTACAGGCAGCGTCAACTGTGCCAACGGACTATACCGTGTTCCAG 411
                      *** ***************** ****    ************ *****************

consensus_2229#0      ATAGGACTCGGCTCAATCCATCTGAATATGGCACGACTTACCAT-GTCCACT-GTCATCA 405
consensus_2229#1      ATAGGACTCTGGTCAATCCATCTGA-TATGGACGCAGTTACCATTGTCCCCTTGGCATCA 470
                      ********* * ************* *****    * ******* **** ** * *****

consensus_2229#0      AGTTTGTGCATCCTGAGTTTGATCCGTGGAAGGTTGACGAATGACGTTGCCCTGATCCGA 465
consensus_2229#1      ------------------------------------------------------------
                                                                                  

consensus_2229#0      CTGCGCTTCACCAGTGCCTTACAGTCTAAGAGATCTATCCAGGTAAAGCTACCGATCAAT 525
consensus_2229#1      ------------------------------------------------------------
                                                                                  

consensus_2229#0      TTNACCACCCAC 537
consensus_2229#1      ------------