cluster # 2235

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Anopheles gambiae
cluster # 2235 cluster # 2235 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2235#0 length = 779 sequences # 1

consensus_2235#1 length = 439 sequences # 1

consensusID : consensus_2235#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 779
fasta sequence

                              [GAACGAATCTTAAGTATATTTAATTTATTGCCATTTTATCGCATCATAATTGAGCGGGGTGATGTGTCATTTGCCTACATTCACGCAGATGACGCAAAACCGATGTGCATCTTCGAGTGAAGTTCCGGTGAAACGTGCAGTGTACCAAATAGTGTCAAACAGGCAGTGATCATGCAGAGAAAAACTTTGGTTCAACCAGTGCTACGGTTTGTTCGGCTGGTGGGACGGACTGCACGGCACGGACAGTGAGTTCCGCAAGAAGAAGCAGTACCAGAGGCACCATCGCATCTTCAGCCTCAAATCGGCCCGCGAGCTCGTCCCGGAGCATTAGCCGCCCGTTAGGATAAGGCTATAGGCATAGAAGGAGCGCAGGAGTTTGCCAACCGAACCGAACCCACCAAGCCATCCCTTCAAGGTTCAAAACGCAAGGTTTTGGGGTGGGACAGACCCTGCGAAACCTCTCCGGTGAGCTGAGCGGAATTTAAATGGACATAATTTAAAAACAAATAACCAATCGGCATCACAGAGCGTGCTTTGAAAGGCGCTAGAGTGTGCTTGCGTGTGGTTTTGCGCGTCTGTGTTGCGTAGTCTAGCAGCGTCCCGTTTGGTACGCGCCAACTGTATTATTTACGGCATAGTATTATCGTTATACATTATACCCTTTTTTCTCCAACTCCTCGTGGGGTATTTTTTGTTTTCCTTTGGAGGAACTGATTTTTAAGTAACTTTTAGAGGAGATGGGCTGGCATCTTTACTGCTAACCAACAACAACAATGTCT]

[+] EMBL BX622654             [GAACGAATCTTAAGTATATTTAATTTATTGCCATTTTATCGCATCATAATTGAGCGGGGTGATGTGTCATTTGCCTACATTCACGCAGATGACGCAAAACCGATGTGCATCTTCGAGTGAAGTTCCGGTGAAACGTGCAGTGTACCAAATAGTGTCAAACAGGCAGTGATCATGCAGAGAAAAACTTTGGTTCAACCAGTGCTACGGTTTGTTCGGCTGGTGGGACGGACTGCACGGCACGGACAGTGAGTTCCGCAAGAAGAAGCAGTACCAGAGGCACCATCGCATCTTCAGCCTCAAATCGGCCCGCGAGCTCGTCCCGGAGCATTAGCCGCCCGTTAGGATAAGGCTATAGGCATAGAAGGAGCGCAGGAGTTTGCCAACCGAACCGAACCCACCAAGCCATCCCTTCAAGGTTCAAAACGCAAGGTTTTGGGGTGGGACAGACCCTGCGAAACCTCTCCGGTGAGCTGAGCGGAATTTAAATGGACATAATTTAAAAACAAATAACCAATCGGCATCACAGAGCGTGCTTTGAAAGGCGCTAGAGTGTGCTTGCGTGTGGTTTTGCGCGTCTGTGTTGCGTAGTCTAGCAGCGTCCCGTTTGGTACGCGCCAACTGTATTATTTACGGCATAGTATTATCGTTATACATTATACCCTTTTTTCTCCAACTCCTCGTGGGGTATTTTTTGTTTTCCTTTGGAGGAACTGATTTTTAAGTAACTTTTAGAGGAGATGGGCTGGCATCTTTACTGCTAACCAACAACAACAATGTCT]




>consensus_2235#0
GAACGAATCTTAAGTATATTTAATTTATTGCCATTTTATCGCATCATAATTGAGCGGGGT
GATGTGTCATTTGCCTACATTCACGCAGATGACGCAAAACCGATGTGCATCTTCGAGTGA
AGTTCCGGTGAAACGTGCAGTGTACCAAATAGTGTCAAACAGGCAGTGATCATGCAGAGA
AAAACTTTGGTTCAACCAGTGCTACGGTTTGTTCGGCTGGTGGGACGGACTGCACGGCAC
GGACAGTGAGTTCCGCAAGAAGAAGCAGTACCAGAGGCACCATCGCATCTTCAGCCTCAA
ATCGGCCCGCGAGCTCGTCCCGGAGCATTAGCCGCCCGTTAGGATAAGGCTATAGGCATA
GAAGGAGCGCAGGAGTTTGCCAACCGAACCGAACCCACCAAGCCATCCCTTCAAGGTTCA
AAACGCAAGGTTTTGGGGTGGGACAGACCCTGCGAAACCTCTCCGGTGAGCTGAGCGGAA
TTTAAATGGACATAATTTAAAAACAAATAACCAATCGGCATCACAGAGCGTGCTTTGAAA
GGCGCTAGAGTGTGCTTGCGTGTGGTTTTGCGCGTCTGTGTTGCGTAGTCTAGCAGCGTC
CCGTTTGGTACGCGCCAACTGTATTATTTACGGCATAGTATTATCGTTATACATTATACC
CTTTTTTCTCCAACTCCTCGTGGGGTATTTTTTGTTTTCCTTTGGAGGAACTGATTTTTA
AGTAACTTTTAGAGGAGATGGGCTGGCATCTTTACTGCTAACCAACAACAACAATGTCT

consensusID : consensus_2235#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [TGTACGTAGGGCCCGCCCTCATGACCAGCCACGTGTTCACGATCGTCATCTGGTTCANCGTTCGTCATGATGGACACGCTGGTGGACCATTCCGGGTATCATCTGCCGGTGCTCGGCAGACTCCGAAATGCACGATTACCACCATCTACAAGTACAACCAGTGCTACGGTTTGTTCGGCTGGTGGGACGGACTGCACGGCACGGACAGTGAGTTCCGCAAGAAGAAGCAGTACCAGCGGCACCATCGCATCTTCAGCCTCAAATCGGCCCGCGAGCTCGTCCCGGAGCATTAGCCGCCCGTTAGGATAAGGCTATAGGCATAGAAGGAGCGCAGGAGTTTGCCAACCGAACCGAACCCACCAAGCCATCCCTTCAAGGTTCAAAACGCAAGGTTTTGGGGTGGGACAGACCCTGCGAAACCTCTCCGGTGAGCTGAGCG]

[+] EMBL BX619883             [TGTACGTAGGGCCCGCCCTCATGACCAGCCACGTGTTCACGATCGTCATCTGGTTCANCGTTCGTCATGATGGACACGCTGGTGGACCATTCCGGGTATCATCTGCCGGTGCTCGGCAGACTCCGAAATGCACGATTACCACCATCTACAAGTACAACCAGTGCTACGGTTTGTTCGGCTGGTGGGACGGACTGCACGGCACGGACAGTGAGTTCCGCAAGAAGAAGCAGTACCAGCGGCACCATCGCATCTTCAGCCTCAAATCGGCCCGCGAGCTCGTCCCGGAGCATTAGCCGCCCGTTAGGATAAGGCTATAGGCATAGAAGGAGCGCAGGAGTTTGCCAACCGAACCGAACCCACCAAGCCATCCCTTCAAGGTTCAAAACGCAAGGTTTTGGGGTGGGACAGACCCTGCGAAACCTCTCCGGTGAGCTGAGCG]




>consensus_2235#1
TGTACGTAGGGCCCGCCCTCATGACCAGCCACGTGTTCACGATCGTCATCTGGTTCANCG
TTCGTCATGATGGACACGCTGGTGGACCATTCCGGGTATCATCTGCCGGTGCTCGGCAGA
CTCCGAAATGCACGATTACCACCATCTACAAGTACAACCAGTGCTACGGTTTGTTCGGCT
GGTGGGACGGACTGCACGGCACGGACAGTGAGTTCCGCAAGAAGAAGCAGTACCAGCGGC
ACCATCGCATCTTCAGCCTCAAATCGGCCCGCGAGCTCGTCCCGGAGCATTAGCCGCCCG
TTAGGATAAGGCTATAGGCATAGAAGGAGCGCAGGAGTTTGCCAACCGAACCGAACCCAC
CAAGCCATCCCTTCAAGGTTCAAAACGCAAGGTTTTGGGGTGGGACAGACCCTGCGAAAC
CTCTCCGGTGAGCTGAGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2235#0      GAACGAATCTTAAGTATATTTAATTTATTGCCATTTTATCGCATCATAATTGAGCGGGGT 60
consensus_2235#1      ----------------------------------------------TGTACGTAGGGCCC 14
                                                                    *    *   **   

consensus_2235#0      GATGTGTCATTTGCCTACATTCACGCAGATGACG-CAAAACCGATGTGCATCTTCGAGTG 119
consensus_2235#1      GCCCTCATGACCAGCCACGTGTTCACGATCGTCATCTGGTTCANCGTTCGTCAT-GATGG 73
                      *   *         * ** *   * *    * *  *     *   ** * ** * **  *

consensus_2235#0      AAGTTCCGGTGAAACGTGCAGTGTACCAAATA---GTGTCAAACAGGCAGTGATCATGCA 176
consensus_2235#1      ACACGCTGGTGGACCATTCCGGGTATCATCTGCCGGTGCTCGGCAGACTCCGAA-ATGCA 132
                      *    * **** * * * * * *** **  *    ***     *** *   **  *****

consensus_2235#0      -GAGAAAAACTTT-----GGTTCAACCAGTGCTACGGTTTGTTCGGCTGGTGGGACGGAC 230
consensus_2235#1      CGATTACCACCATCTACAAGTACAACCAGTGCTACGGTTTGTTCGGCTGGTGGGACGGAC 192
                       **  *  **  *      ** **************************************

consensus_2235#0      TGCACGGCACGGACAGTGAGTTCCGCAAGAAGAAGCAGTACCAGAGGCACCATCGCATCT 290
consensus_2235#1      TGCACGGCACGGACAGTGAGTTCCGCAAGAAGAAGCAGTACCAGCGGCACCATCGCATCT 252
                      ******************************************** ***************

consensus_2235#0      TCAGCCTCAAATCGGCCCGCGAGCTCGTCCCGGAGCATTAGCCGCCCGTTAGGATAAGGC 350
consensus_2235#1      TCAGCCTCAAATCGGCCCGCGAGCTCGTCCCGGAGCATTAGCCGCCCGTTAGGATAAGGC 312
                      ************************************************************

consensus_2235#0      TATAGGCATAGAAGGAGCGCAGGAGTTTGCCAACCGAACCGAACCCACCAAGCCATCCCT 410
consensus_2235#1      TATAGGCATAGAAGGAGCGCAGGAGTTTGCCAACCGAACCGAACCCACCAAGCCATCCCT 372
                      ************************************************************

consensus_2235#0      TCAAGGTTCAAAACGCAAGGTTTTGGGGTGGGACAGACCCTGCGAAACCTCTCCGGTGAG 470
consensus_2235#1      TCAAGGTTCAAAACGCAAGGTTTTGGGGTGGGACAGACCCTGCGAAACCTCTCCGGTGAG 432
                      ************************************************************

consensus_2235#0      CTGAGCGGAATTTAAATGGACATAATTTAAAAACAAATAACCAATCGGCATCACAGAGCG 530
consensus_2235#1      CTGAGCG----------------------------------------------------- 439
                      *******                                                     

consensus_2235#0      TGCTTTGAAAGGCGCTAGAGTGTGCTTGCGTGTGGTTTTGCGCGTCTGTGTTGCGTAGTC 590
consensus_2235#1      ------------------------------------------------------------
                                                                                  

consensus_2235#0      TAGCAGCGTCCCGTTTGGTACGCGCCAACTGTATTATTTACGGCATAGTATTATCGTTAT 650
consensus_2235#1      ------------------------------------------------------------
                                                                                  

consensus_2235#0      ACATTATACCCTTTTTTCTCCAACTCCTCGTGGGGTATTTTTTGTTTTCCTTTGGAGGAA 710
consensus_2235#1      ------------------------------------------------------------
                                                                                  

consensus_2235#0      CTGATTTTTAAGTAACTTTTAGAGGAGATGGGCTGGCATCTTTACTGCTAACCAACAACA 770
consensus_2235#1      ------------------------------------------------------------
                                                                                  

consensus_2235#0      ACAATGTCT 779
consensus_2235#1      ---------