cluster # 224

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Anopheles gambiae
cluster # 224 cluster # 224 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_224#0 length = 579 sequences # 1

consensus_224#1 length = 447 sequences # 1

consensusID : consensus_224#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [TCGCCCGAGGTTTTCCGGGCAGTGTACTGAAACTGTTGTGACACATTTCGCCAAGATGTTCATGCCAAAAGCACATCGAGTCGCCATCTACGAGTACCTCTTCAAGGAGTGGTGTGCTGGTCGCGCAGAAGGATTTCTACGCCCCGAAACACCCGGAGCTGGAGAACATCCCGAACCTGCACGTCATCAAGACGATGCAGTCGCTCAAGTCGAAGAACTTCGTGAAGGAGCAGTTCTGCCTGGCTGCCACTACTACTTGGTATCTTGACCAACTGATGGTGTATCTGATGTACCTGCTGCTGCCTTCCTGCGATCTTGCCTGTCCTGAGATCTGTTGCCTGTCTGACTGCTGAAGCTGCTGCCTGCCCTGCTCTGTGATGCCACATGCTGTGCCCTGCACCCTATGGCCTGTGCCCCCTGTGTCCCTGATGTGTGTCCTGAATGACTGGGTGCTGATGTGTGCCTGCCCATGTGGCATACCTGTGCTGCATTGCCATGCCAGTGCTCTGGCCCTGNGCCTGATCAATCGAATGTGGATGACGTCTGNGGTGTCTGTGTTGCCTGGCTGATGTCGAATAC]

[+] EMBL AL931906             [TCGCCCGAGGTTTTCCGGGCAGTGTACTGAAACTGTTGTGACACATTTCGCCAAGATGTTCATGCCAAAAGCACATCGAGTCGCCATCTACGAGTACCTCTTCAAGGAGTGGTGTGCTGGTCGCGCAGAAGGATTTCTACGCCCCGAAACACCCGGAGCTGGAGAACATCCCGAACCTGCACGTCATCAAGACGATGCAGTCGCTCAAGTCGAAGAACTTCGTGAAGGAGCAGTTCTGCCTGGCTGCCACTACTACTTGGTATCTTGACCAACTGATGGTGTATCTGATGTACCTGCTGCTGCCTTCCTGCGATCTTGCCTGTCCTGAGATCTGTTGCCTGTCTGACTGCTGAAGCTGCTGCCTGCCCTGCTCTGTGATGCCACATGCTGTGCCCTGCACCCTATGGCCTGTGCCCCCTGTGTCCCTGATGTGTGTCCTGAATGACTGGGTGCTGATGTGTGCCTGCCCATGTGGCATACCTGTGCTGCATTGCCATGCCAGTGCTCTGGCCCTGNGCCTGATCAATCGAATGTGGATGACGTCTGNGGTGTCTGTGTTGCCTGGCTGATGTCGAATAC]




>consensus_224#0
TCGCCCGAGGTTTTCCGGGCAGTGTACTGAAACTGTTGTGACACATTTCGCCAAGATGTT
CATGCCAAAAGCACATCGAGTCGCCATCTACGAGTACCTCTTCAAGGAGTGGTGTGCTGG
TCGCGCAGAAGGATTTCTACGCCCCGAAACACCCGGAGCTGGAGAACATCCCGAACCTGC
ACGTCATCAAGACGATGCAGTCGCTCAAGTCGAAGAACTTCGTGAAGGAGCAGTTCTGCC
TGGCTGCCACTACTACTTGGTATCTTGACCAACTGATGGTGTATCTGATGTACCTGCTGC
TGCCTTCCTGCGATCTTGCCTGTCCTGAGATCTGTTGCCTGTCTGACTGCTGAAGCTGCT
GCCTGCCCTGCTCTGTGATGCCACATGCTGTGCCCTGCACCCTATGGCCTGTGCCCCCTG
TGTCCCTGATGTGTGTCCTGAATGACTGGGTGCTGATGTGTGCCTGCCCATGTGGCATAC
CTGTGCTGCATTGCCATGCCAGTGCTCTGGCCCTGNGCCTGATCAATCGAATGTGGATGA
CGTCTGNGGTGTCTGTGTTGCCTGGCTGATGTCGAATAC

consensusID : consensus_224#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence

                              [ATAATGTACAAAATGATGAAAAAAAAAAAAAAAAAAATACGAGTATCTGATAGACGATAATGTCGAACAAGATTGCAATCCTCCTGGCAGTGCTGGTTGTGGCGGTGGCTTGTGCACAAGCACGAGTCGCACAACAACATCGGTCCGTTCAAGCCCTGCCAAGATTCCTGCCGCGACCCCACTACGATGTAGGCCATCGTATTGTCGGTGGATTCGAGATCGACGTGTCTGAAACTCCGTATCAGGTGTCGCTGCAGTACTTCAACAGCCATCGGTGCGGTGGATCTGTGCTGAACAGTAAGTGGATCCTGACTGCCGCTCACTGCACGGTGAACCTGCAGCCTAGCAGCCTTGCAGTACGGCTAGGATCATCGCGACACGCGTCTGGAGGAACCGTTGTGCGAGTTGCCCGTGTACTCGAGCATCCGAACTACGATGATAGCACTA]

[+] EMBL CNS09LWP             [ATAATGTACAAAATGATGAAAAAAAAAAAAAAAAAAATACGAGTATCTGATAGACGATAATGTCGAACAAGATTGCAATCCTCCTGGCAGTGCTGGTTGTGGCGGTGGCTTGTGCACAAGCACGAGTCGCACAACAACATCGGTCCGTTCAAGCCCTGCCAAGATTCCTGCCGCGACCCCACTACGATGTAGGCCATCGTATTGTCGGTGGATTCGAGATCGACGTGTCTGAAACTCCGTATCAGGTGTCGCTGCAGTACTTCAACAGCCATCGGTGCGGTGGATCTGTGCTGAACAGTAAGTGGATCCTGACTGCCGCTCACTGCACGGTGAACCTGCAGCCTAGCAGCCTTGCAGTACGGCTAGGATCATCGCGACACGCGTCTGGAGGAACCGTTGTGCGAGTTGCCCGTGTACTCGAGCATCCGAACTACGATGATAGCACTA]




>consensus_224#1
ATAATGTACAAAATGATGAAAAAAAAAAAAAAAAAAATACGAGTATCTGATAGACGATAA
TGTCGAACAAGATTGCAATCCTCCTGGCAGTGCTGGTTGTGGCGGTGGCTTGTGCACAAG
CACGAGTCGCACAACAACATCGGTCCGTTCAAGCCCTGCCAAGATTCCTGCCGCGACCCC
ACTACGATGTAGGCCATCGTATTGTCGGTGGATTCGAGATCGACGTGTCTGAAACTCCGT
ATCAGGTGTCGCTGCAGTACTTCAACAGCCATCGGTGCGGTGGATCTGTGCTGAACAGTA
AGTGGATCCTGACTGCCGCTCACTGCACGGTGAACCTGCAGCCTAGCAGCCTTGCAGTAC
GGCTAGGATCATCGCGACACGCGTCTGGAGGAACCGTTGTGCGAGTTGCCCGTGTACTCG
AGCATCCGAACTACGATGATAGCACTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_224#0      TCGCCCGAGGTTTTCCGGGCAGTGTACTGAAACTGTTGTGACACATTTCGCCAAGATGTT 60
consensus_224#1      ------------------ATAATGTAC-AAAATGATGAAAAAAAAAAAAAAAAAAATACG 41
                                         * *****  ***   *    * * *       ** **   

consensus_224#0      CATGCCAAAAGCACATCGAGTCGCCATCTACGAGTACC-TCTTCAAGGAGTGGTGTGCTG 119
consensus_224#1      AGTATCTGATAGACGATAA--TGTCGAACAAGATTGCAATCCTCCTGGCA----GTGCTG 95
                       *  *  *   **    *   * *    * ** * *  ** **  **      ******

consensus_224#0      GTCGCGCAGAAGGATTTCTACGCCCCGAAACACCCGGAGCTGGAGAACATCCCGAACCTG 179
consensus_224#1      GTTGTGGCGGTGG-CTTGTGCAC----AAGCAC---GAGTCGCACAACAAC----ATCGG 143
                     ** * *  *  **  ** * * *    ** ***   ***  * * **** *    * * *

consensus_224#0      CACGTCATCAAGACGATGCAGTCGCTCAAGTCGAAGAACTTCGTGAAGGAGCAGTTCTGC 239
consensus_224#1      TCCGT--TCAAGCCC-TGCCAAGATTCCTGCCGCG--ACCCCACTACGATGTAGG-CCAT 197
                       ***  ***** *  ***      **  * **    **  *   * *  * **  *   

consensus_224#0      CTGGCTGCCACTACTACTTGGTATCTTGAC-CAACTGATGGTGTATCTGATGTACCTGCT 298
consensus_224#1      CGTATTGTCGGTGG-ATTCGAGATC--GACGTGTCTGAAACTCCGTATCAGGTGTC-GCT 253
                     *    ** *  *   * * *  ***  ***    ****   *   * * * **  * ***

consensus_224#0      GCTGCCTTCCTGCGATCTTGCCTGTCCTGAGATCTGTTGCCTGTCTGACTGCTGAAGCTG 358
consensus_224#1      GCAGTACTTCAACAGCCATCGGTGCGGTG-GATCTGTG--CTGAACAGTAAGTGGATC-- 308
                     ** *   * *  *   * *   **   ** *******   ***         ** * *  

consensus_224#0      CTGCCTGCCCTGCTCTGTGATGCCACATGCTGTGCCCTGCACCCTATGGCCTGTGCCCCC 418
consensus_224#1      CTGACTGCCGCTCACTGC-ACGGTGAACCTGCAGCCTAGCAGCCT-TGCAGTACGGCTAG 366
                     *** *****   * ***  * *    *      ***  *** *** **   *  * *   

consensus_224#0      TGTGTCCCTGATGTGTGTCCTGAATGACTGGGTGCTGATGTGTGCCTGCCCATGTGGCAT 478
consensus_224#1      GATCATCGCGACACGCGTCTGGAGGAACCG-----TTGTGCGAGT-TGCCCGTGTACTCG 420
                       *   *  **   * ***  **   ** *     *  ** * *  ***** ***     

consensus_224#0      ACCTGTGCTGCATTGCCATGCCAGTGCTCTGGCCCTGNGCCTGATCAATCGAATGTGGAT 538
consensus_224#1      AGCAT--CCGAACTACGATGATAGCACTA------------------------------- 447
                     * *    * * * * * ***  **  **                                

consensus_224#0      GACGTCTGNGGTGTCTGTGTTGCCTGGCTGATGTCGAATAC 579
consensus_224#1      -----------------------------------------