cluster # 2241

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Anopheles gambiae
cluster # 2241 cluster # 2241 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2241#0 length = 699 sequences # 1

consensus_2241#1 length = 472 sequences # 1

consensusID : consensus_2241#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 699
fasta sequence

                              [GACCCACGCGTCCGAGCAGCAACGCCTCAGAGGGGATCACATCTGACCTAGCCAAAGATCAGAATTACGCAGCATTACACGTATCACATCATTTGCATACCCTGCTTTGCATTATTTCACAACAAATGACAACTATTCAGAGCCTGCAACATCAGTTAAACAATTATCGCGAAAATCCAAAAACTCTGTATCGGCATAACGACCAGCTGGAAGAGCTGCGCAACTTACAGGATAAATTACAAGAGGAAAAGACAGCTTGGCAAAAGCAAAAAGAACAAGAGGAGCGAGAGCTCGAAGAAACTAAAAAGTCACAAAAAGCACAACAGGAACAAATACGAGCTGAGCAGGAAGATATCAGACAGCAACGCGAACAGTTGTATCGCAAGATGGAAATATTATCCAGCCAAGGACTATTGCTTTCACCCAGCGTTGCGCTACCAATACCAACCGGGGTAGTTACTTCTTTAGACGAGGCTCTAAGTGTTAGTGAAGAGCATCACGTTGATAGTGCGTTCGCTGGAAGCATCCCGGCAAGTTCGATGATTGGATCTTCTGTTACAATCGATCGCAAAAAGGATAAATGGCGAACAGCAAGCATCACGAAGACACCTCCAGCTAACTTAGTGAGCGCAACCAATGCAGCAAAGATCAATGCAACAAACATAAAACAGCAGCTCCCGTTAAAACTATCCTCGTTAT]

[+] EMBL BM620590             [GACCCACGCGTCCGAGCAGCAACGCCTCAGAGGGGATCACATCTGACCTAGCCAAAGATCAGAATTACGCAGCATTACACGTATCACATCATTTGCATACCCTGCTTTGCATTATTTCACAACAAATGACAACTATTCAGAGCCTGCAACATCAGTTAAACAATTATCGCGAAAATCCAAAAACTCTGTATCGGCATAACGACCAGCTGGAAGAGCTGCGCAACTTACAGGATAAATTACAAGAGGAAAAGACAGCTTGGCAAAAGCAAAAAGAACAAGAGGAGCGAGAGCTCGAAGAAACTAAAAAGTCACAAAAAGCACAACAGGAACAAATACGAGCTGAGCAGGAAGATATCAGACAGCAACGCGAACAGTTGTATCGCAAGATGGAAATATTATCCAGCCAAGGACTATTGCTTTCACCCAGCGTTGCGCTACCAATACCAACCGGGGTAGTTACTTCTTTAGACGAGGCTCTAAGTGTTAGTGAAGAGCATCACGTTGATAGTGCGTTCGCTGGAAGCATCCCGGCAAGTTCGATGATTGGATCTTCTGTTACAATCGATCGCAAAAAGGATAAATGGCGAACAGCAAGCATCACGAAGACACCTCCAGCTAACTTAGTGAGCGCAACCAATGCAGCAAAGATCAATGCAACAAACATAAAACAGCAGCTCCCGTTAAAACTATCCTCGTTAT]




>consensus_2241#0
GACCCACGCGTCCGAGCAGCAACGCCTCAGAGGGGATCACATCTGACCTAGCCAAAGATC
AGAATTACGCAGCATTACACGTATCACATCATTTGCATACCCTGCTTTGCATTATTTCAC
AACAAATGACAACTATTCAGAGCCTGCAACATCAGTTAAACAATTATCGCGAAAATCCAA
AAACTCTGTATCGGCATAACGACCAGCTGGAAGAGCTGCGCAACTTACAGGATAAATTAC
AAGAGGAAAAGACAGCTTGGCAAAAGCAAAAAGAACAAGAGGAGCGAGAGCTCGAAGAAA
CTAAAAAGTCACAAAAAGCACAACAGGAACAAATACGAGCTGAGCAGGAAGATATCAGAC
AGCAACGCGAACAGTTGTATCGCAAGATGGAAATATTATCCAGCCAAGGACTATTGCTTT
CACCCAGCGTTGCGCTACCAATACCAACCGGGGTAGTTACTTCTTTAGACGAGGCTCTAA
GTGTTAGTGAAGAGCATCACGTTGATAGTGCGTTCGCTGGAAGCATCCCGGCAAGTTCGA
TGATTGGATCTTCTGTTACAATCGATCGCAAAAAGGATAAATGGCGAACAGCAAGCATCA
CGAAGACACCTCCAGCTAACTTAGTGAGCGCAACCAATGCAGCAAAGATCAATGCAACAA
ACATAAAACAGCAGCTCCCGTTAAAACTATCCTCGTTAT

consensusID : consensus_2241#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [AGCAGATCGGCCGAGGGTATACTTCTGTTACAATCGATCGCACAAAAGGATAAATGGCGTAACAGCAAGCATCACGAAGACACCTCCAGCTAACTTAGTGAGCGCAACCAATGCAGCAAAGATCAATGCAACAAACATAAAACAGCAGCTCCCGCTTAAACACTATCCTCGGTTATCTAGTACAAAGGCTGGTTCTACTGCCATGTTAACATGGTAATGTCACCTAACAGTGGTAATGTANGCTGCGCGCTGCTCATGGAACCAAATAGTGGTGTGACCACAAATGTTTCCCTTGAAGCTTGCAGACAAGAAGCATTTCTTCCACTGGTACTCCGAATCATTCACGGACCGGCAGCAGTCCTGNCGTGATACAGCAGCAAATTCAAGTACAATCGGGCAATCCTGCTACTAGAACCAATACCTATCCAAAAATACCTGAACGCTTTCGCCTAACNAAGTTCGGACAACTATC]

[+] EMBL AL696717             [AGCAGATCGGCCGAGGGTATACTTCTGTTACAATCGATCGCACAAAAGGATAAATGGCGTAACAGCAAGCATCACGAAGACACCTCCAGCTAACTTAGTGAGCGCAACCAATGCAGCAAAGATCAATGCAACAAACATAAAACAGCAGCTCCCGCTTAAACACTATCCTCGGTTATCTAGTACAAAGGCTGGTTCTACTGCCATGTTAACATGGTAATGTCACCTAACAGTGGTAATGTANGCTGCGCGCTGCTCATGGAACCAAATAGTGGTGTGACCACAAATGTTTCCCTTGAAGCTTGCAGACAAGAAGCATTTCTTCCACTGGTACTCCGAATCATTCACGGACCGGCAGCAGTCCTGNCGTGATACAGCAGCAAATTCAAGTACAATCGGGCAATCCTGCTACTAGAACCAATACCTATCCAAAAATACCTGAACGCTTTCGCCTAACNAAGTTCGGACAACTATC]




>consensus_2241#1
AGCAGATCGGCCGAGGGTATACTTCTGTTACAATCGATCGCACAAAAGGATAAATGGCGT
AACAGCAAGCATCACGAAGACACCTCCAGCTAACTTAGTGAGCGCAACCAATGCAGCAAA
GATCAATGCAACAAACATAAAACAGCAGCTCCCGCTTAAACACTATCCTCGGTTATCTAG
TACAAAGGCTGGTTCTACTGCCATGTTAACATGGTAATGTCACCTAACAGTGGTAATGTA
NGCTGCGCGCTGCTCATGGAACCAAATAGTGGTGTGACCACAAATGTTTCCCTTGAAGCT
TGCAGACAAGAAGCATTTCTTCCACTGGTACTCCGAATCATTCACGGACCGGCAGCAGTC
CTGNCGTGATACAGCAGCAAATTCAAGTACAATCGGGCAATCCTGCTACTAGAACCAATA
CCTATCCAAAAATACCTGAACGCTTTCGCCTAACNAAGTTCGGACAACTATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2241#0      GACCCACGCGTCCGAGCAGCAACGCCTCAGAGGGGATCACATCTGACCTAGCCAAAGATC 60
consensus_2241#1      ------------------------------------------------------------
                                                                                  

consensus_2241#0      AGAATTACGCAGCATTACACGTATCACATCATTTGCATACCCTGCTTTGCATTATTTCAC 120
consensus_2241#1      ------------------------------------------------------------
                                                                                  

consensus_2241#0      AACAAATGACAACTATTCAGAGCCTGCAACATCAGTTAAACAATTATCGCGAAAATCCAA 180
consensus_2241#1      ------------------------------------------------------------
                                                                                  

consensus_2241#0      AAACTCTGTATCGGCATAACGACCAGCTGGAAGAGCTGCGCAACTTACAGGATAAATTAC 240
consensus_2241#1      ------------AGCAGATCGGCC-----GAGGGTATACTTCTGTTACAATCGATCGCAC 43
                                   *** * ** **     ** *   * *     *****    *    **

consensus_2241#0      AAGAGGAAAAGACAGCTTGGCAAAAGCAAAAAGAACAAGAGGAGCGAGAGCTCGAAGAAA 300
consensus_2241#1      AAAAGGATAA-ATGGC---GTAACAGCAAGCATCACGAA------GACACCTCCAGCTAA 93
                      ** **** ** *  **   * ** *****  *  ** *       ** * *** *   **

consensus_2241#0      CTAAAAAGTCACAAAAAGCACAACAGGAACAAATACGAGCTGAGCAGGAAGATATCAGAC 360
consensus_2241#1      CTTAGTGAGCGCAACCAATGCAGCAAAGATCAATGCAA--CAAACAT-AAAACAGCAG-C 149
                      ** *     * ***  *   ** **   *  *** * *    * **  ** * * *** *

consensus_2241#0      AGCAACGCGAACAGTTGTATCGCAAGATGGAAATATTATCCAGCCAAGGACTATTGCTTT 420
consensus_2241#1      TCCCGCTTAAACACT---ATCCTCGGTT--ATCTAGTACAAAGGCTGGTTCTACTGCCAT 204
                        *  *   **** *   ***    * *  *  ** **   ** *  *  *** ***  *

consensus_2241#0      CACCCAGCGTTGCGCTACCAATACCAACCGGGGTAGTTACTTCTTTAGACGAGGCTCTAA 480
consensus_2241#1      --GTTAACATGGTAATGTCAC--CTAACAGTGGTAATG--TANGCTGCGCGCTGCTC--- 255
                           * * * *   *  **   * *** * **** *   *    *   **  ****   

consensus_2241#0      GTGTTAGTGAAGAGCATCACGTTGATAGTGCGTTCGCTGGAAGCATCCCGGCAAGTTCGA 540
consensus_2241#1      ATGGAACCAAATAGTGGTGTGACCACAAATGTTTCCCTTGAAGCTTGCAGACAAG---AA 312
                       **  *   ** **      *   * *     *** ** ***** * * * ****    *

consensus_2241#0      TGATTGGATCTTCTGTTACAATCGATCGCAAAAAGGATAAATGGCGAACAGCAAGCATCA 600
consensus_2241#1      GCATTTCTTCCACTGGTACTCCGAATCATTCAC-GGACCGGCAGCAGTCCTGNCGTGATA 371
                        ***   **  *** ***     ***    *  ***      **   *     *    *

consensus_2241#0      CGAAGACACCTCCAGCTA-ACTTAGTGAGCGCAACCAATGCAGCAAAGATCAATGCAACA 659
consensus_2241#1      CAGCAGCAAATTCAAGTACAATCGGGCAATCCTGCTACTAGAACCAATACCTATCCAAAA 431
                      *     **  * **  ** * *  *  *   *  * * *  * * ** * * ** *** *

consensus_2241#0      AACATAAAACAGCAGCTCCCGTTAAAACTATCCTCGTTAT- 699
consensus_2241#1      ATACCTGAACGCTTTCGCCTAACNAAGTTCGGACAACTATC 472
                      *      ***     * **     **  *        ***