cluster # 2249

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Anopheles gambiae
cluster # 2249 cluster # 2249 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2249#0 length = 621 sequences # 1

consensus_2249#1 length = 562 sequences # 1

consensusID : consensus_2249#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [TACTGGCTCAGCAGATCGCAGAGGTATCANGTGTATCATTAACAGTAACAAAGACCGCCAGTATTTCACGATGAGAAACATTCTGTTCGTAGTTGCCTGCCTTCCGGGCCTGGGCGTTCGGTCTTGCGGTGAGGCCTTGTGCCAACAATGCACCCATCCCGCAGGATGTGCGCGTTGTANGCTGCACGGTAGAAACCTGCGTCATCCCGATCGGCGGTATGGTCGATATGGACTGTGACCTTCGNTNTCGCCCGTGCTCCCAGAAGGTCCGGGGCGACGCTGGACATCTTTAACAGGGCGAATTTCCGTGTACCGTACGATCTGGCCGGCCGATCACGACGAATGCCATGCAAACTTCTTCGCAAGNCTGGCAGACTGGCCAGGTGACAGGCCAGAGGTGAGGTTCATCAACTATACACACTGAGNGACACCGGCCGAGACAGNGCACCCGTATACCGCGGGNGGCNATTAAACGCCGGTCTGAANCCTGCACAGAACTCGCNACAGCGTATTANNCCGNCAGACGANCATAACGGAACGACNAAGACAACCATGGGTAGACTGGACATACCACNGCGTTCCGTCCTTGGCAGACCAGAATTTAGGAGGGCACAGGTGCAT]

[+] EMBL AL696766             [TACTGGCTCAGCAGATCGCAGAGGTATCANGTGTATCATTAACAGTAACAAAGACCGCCAGTATTTCACGATGAGAAACATTCTGTTCGTAGTTGCCTGCCTTCCGGGCCTGGGCGTTCGGTCTTGCGGTGAGGCCTTGTGCCAACAATGCACCCATCCCGCAGGATGTGCGCGTTGTANGCTGCACGGTAGAAACCTGCGTCATCCCGATCGGCGGTATGGTCGATATGGACTGTGACCTTCGNTNTCGCCCGTGCTCCCAGAAGGTCCGGGGCGACGCTGGACATCTTTAACAGGGCGAATTTCCGTGTACCGTACGATCTGGCCGGCCGATCACGACGAATGCCATGCAAACTTCTTCGCAAGNCTGGCAGACTGGCCAGGTGACAGGCCAGAGGTGAGGTTCATCAACTATACACACTGAGNGACACCGGCCGAGACAGNGCACCCGTATACCGCGGGNGGCNATTAAACGCCGGTCTGAANCCTGCACAGAACTCGCNACAGCGTATTANNCCGNCAGACGANCATAACGGAACGACNAAGACAACCATGGGTAGACTGGACATACCACNGCGTTCCGTCCTTGGCAGACCAGAATTTAGGAGGGCACAGGTGCAT]




>consensus_2249#0
TACTGGCTCAGCAGATCGCAGAGGTATCANGTGTATCATTAACAGTAACAAAGACCGCCA
GTATTTCACGATGAGAAACATTCTGTTCGTAGTTGCCTGCCTTCCGGGCCTGGGCGTTCG
GTCTTGCGGTGAGGCCTTGTGCCAACAATGCACCCATCCCGCAGGATGTGCGCGTTGTAN
GCTGCACGGTAGAAACCTGCGTCATCCCGATCGGCGGTATGGTCGATATGGACTGTGACC
TTCGNTNTCGCCCGTGCTCCCAGAAGGTCCGGGGCGACGCTGGACATCTTTAACAGGGCG
AATTTCCGTGTACCGTACGATCTGGCCGGCCGATCACGACGAATGCCATGCAAACTTCTT
CGCAAGNCTGGCAGACTGGCCAGGTGACAGGCCAGAGGTGAGGTTCATCAACTATACACA
CTGAGNGACACCGGCCGAGACAGNGCACCCGTATACCGCGGGNGGCNATTAAACGCCGGT
CTGAANCCTGCACAGAACTCGCNACAGCGTATTANNCCGNCAGACGANCATAACGGAACG
ACNAAGACAACCATGGGTAGACTGGACATACCACNGCGTTCCGTCCTTGGCAGACCAGAA
TTTAGGAGGGCACAGGTGCAT

consensusID : consensus_2249#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence

                              [CCGTAACCAGTAACCAAAGACCCGCCAGTATTTCACGATGAGAAACATTCTGTTCGTAGTTGCCTGCCTTCCGGCCCTGGCGTTCGGTCTTGCGGTGAGGCCTTGTGCCAACAATGCACCCATCCCGCAGGATGTGCGCGTTGTAGGCTGCACGGTAGAACCCTGCGTCATCCCGATCGGCGGTATGGTCGATATGGACTGTGACTTCGTTTCGCCCCGTGCCTCCCAGACGGTCCGGGCGACGCTGGACATCTTTTTGGGCGATTTCCGTGTACCGTACGATCTGCCGGCCGATCAGACGAATGCGTGCAACTTCTTCGAAGCTGGCAGCTGCCCGGTGACGGCGGGTGAGTTCATCAACTATCACCTGAGCACACCGGCGGCGGCACCGTTCGCGGGCATTACCGTCGACCTGCAGCTGCAGCTTACCGACGACAACGACCAGCCACTGTTCTGCTTCCGCTCGTCTGCACAGATTGTGGCCGTCTAATGTGTGTAATAGAAATACAAATGTAATAAAATTGACTGATTGGATTGGGTTGGAAAAAAAAACTCACCCCTC]

[+] EMBL BM595135             [CCGTAACCAGTAACCAAAGACCCGCCAGTATTTCACGATGAGAAACATTCTGTTCGTAGTTGCCTGCCTTCCGGCCCTGGCGTTCGGTCTTGCGGTGAGGCCTTGTGCCAACAATGCACCCATCCCGCAGGATGTGCGCGTTGTAGGCTGCACGGTAGAACCCTGCGTCATCCCGATCGGCGGTATGGTCGATATGGACTGTGACTTCGTTTCGCCCCGTGCCTCCCAGACGGTCCGGGCGACGCTGGACATCTTTTTGGGCGATTTCCGTGTACCGTACGATCTGCCGGCCGATCAGACGAATGCGTGCAACTTCTTCGAAGCTGGCAGCTGCCCGGTGACGGCGGGTGAGTTCATCAACTATCACCTGAGCACACCGGCGGCGGCACCGTTCGCGGGCATTACCGTCGACCTGCAGCTGCAGCTTACCGACGACAACGACCAGCCACTGTTCTGCTTCCGCTCGTCTGCACAGATTGTGGCCGTCTAATGTGTGTAATAGAAATACAAATGTAATAAAATTGACTGATTGGATTGGGTTGGAAAAAAAAACTCACCCCTC]




>consensus_2249#1
CCGTAACCAGTAACCAAAGACCCGCCAGTATTTCACGATGAGAAACATTCTGTTCGTAGT
TGCCTGCCTTCCGGCCCTGGCGTTCGGTCTTGCGGTGAGGCCTTGTGCCAACAATGCACC
CATCCCGCAGGATGTGCGCGTTGTAGGCTGCACGGTAGAACCCTGCGTCATCCCGATCGG
CGGTATGGTCGATATGGACTGTGACTTCGTTTCGCCCCGTGCCTCCCAGACGGTCCGGGC
GACGCTGGACATCTTTTTGGGCGATTTCCGTGTACCGTACGATCTGCCGGCCGATCAGAC
GAATGCGTGCAACTTCTTCGAAGCTGGCAGCTGCCCGGTGACGGCGGGTGAGTTCATCAA
CTATCACCTGAGCACACCGGCGGCGGCACCGTTCGCGGGCATTACCGTCGACCTGCAGCT
GCAGCTTACCGACGACAACGACCAGCCACTGTTCTGCTTCCGCTCGTCTGCACAGATTGT
GGCCGTCTAATGTGTGTAATAGAAATACAAATGTAATAAAATTGACTGATTGGATTGGGT
TGGAAAAAAAAACTCACCCCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2249#0      TACTGGCTCAGCAGATCGCAGAGGTATCANGTGTATCATTAACAGTAAC-AAAGACC-GC 58
consensus_2249#1      -----------------------------------CCGTAACCAGTAACCAAAGACCCGC 25
                                                          * * * ******* ******* **

consensus_2249#0      CAGTATTTCACGATGAGAAACATTCTGTTCGTAGTTGCCTGCCTTCCGGGCCTGGGCGTT 118
consensus_2249#1      CAGTATTTCACGATGAGAAACATTCTGTTCGTAGTTGCCTGCCTTCCGGCCCTGG-CGTT 84
                      ************************************************* ***** ****

consensus_2249#0      CGGTCTTGCGGTGAGGCCTTGTGCCAACAATGCACCCATCCCGCAGGATGTGCGCGTTGT 178
consensus_2249#1      CGGTCTTGCGGTGAGGCCTTGTGCCAACAATGCACCCATCCCGCAGGATGTGCGCGTTGT 144
                      ************************************************************

consensus_2249#0      ANGCTGCACGGTAGAAACCTGCGTCATCCCGATCGGCGGTATGGTCGATATGGACTGTGA 238
consensus_2249#1      AGGCTGCACGGTAGAACCCTGCGTCATCCCGATCGGCGGTATGGTCGATATGGACTGTGA 204
                      * ************** *******************************************

consensus_2249#0      CCTTCGNTNTCGCCCGTGC-TCCCAGAAGGTCCGGGGCGACGCTGGACATCTTTAACAGG 297
consensus_2249#1      C-TTCGTTTCGCCCCGTGCCTCCCAGACGGTCCGGG-CGACGCTGGACATCTTT--TTGG 260
                      * **** *    ******* ******* ******** *****************    **

consensus_2249#0      GCGAATTTCCGTGTACCGTACGATCTGGCCGGCCGATCACGACGAATGCCATGCAAACTT 357
consensus_2249#1      GCGA-TTTCCGTGTACCGTACGATCTG-CCGGCCGATCA-GACGAATGC-GTGCAA-CTT 315
                      **** ********************** *********** *********  ***** ***

consensus_2249#0      CTTCGCAAGNCTGGCAGACTGGCCAGGTGACAGGCCAGAGGTGAGGTTCATCAACTATAC 417
consensus_2249#1      CTTCG--AAGCTGGCAG--CTGCCCGGTGACGGC----GGGTGAG-TTCATCAACTAT-C 365
                      *****  *  *******    *** ****** *      ****** ************ *

consensus_2249#0      ACACTGAGNGACACCGGCCGAGACAGNGCACCCGTATACCGCGGGNGGCNATTAAACGCC 477
consensus_2249#1      AC-CTGAGC-ACACCGGCGGCGGCACCGTTCGCGGGCATTACCGTCGACC-TGCAGCTGC 422
                      ** *****  ******** * * **  *  * **   *   * *  * *  *  * *  *

consensus_2249#0      GGTCTGAANCCTGCACAGAACTCGCNACAGCGTATTANNCCGNCAGACGANCATAACGGA 537
consensus_2249#1      AGCTTACCGACGACA-ACGACCAGCCAC----TGTTCTGCTTCCGCTCGTCTGCA-CAGA 476
                       *  *     *  ** *  **  ** **    * **   *   *   **     * * **

consensus_2249#0      ACGACNAAGACAACCATGGGTAGACTGGACATACCACNGCGTTCCGTCCTTGGCAGACCA 597
consensus_2249#1      TTGTGGCCGTCTA--ATGTGTGTAATAGAAATACAAATGTAAT--AAAATTGACTGATTG 532
                        *     * * *  *** **  * * ** **** *  *   *      *** * **   

consensus_2249#0      GAAT---TTAGGAGGGCACAGGTGCAT--- 621
consensus_2249#1      GATTGGGTTGGAAAAAAAAACTCACCCCTC 562
                      ** *   ** * *    * *    *