cluster # 2252

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Anopheles gambiae
cluster # 2252 cluster # 2252 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2252#0 length = 648 sequences # 1

consensus_2252#1 length = 579 sequences # 1

consensusID : consensus_2252#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [GCAAGAATCGCCACGAGGTTATTTCGCATTAAATAAAATTTCCTATTCGTACTGCCTGTTTTTAACTATCTCTTAAATCGCGCTGTCACTTAAAGTACCGGTCCGATCGGTTCACCTTGCTCAGGAAGCCGTTGTAAAAGTCTTGCCCCGACAGTGTCTTCTTTCCGCCGACGGATAGCTGCAACAGTTCTAGCGCTCGACCGTCACCGACCGAACCAGCAGCTGCCTGCTGCGCTTGGAGTATTCGAGCTGGCCGGGCCGGTCCGCCGGCACTGCGGGTACCGATTGCGTGCTGTCGAAGGATAGTTTAAACAGCTTCACTAGCTCCCCCCCAAAGTTGGTGAGCAGTGGGCGCAGACCGTACAGGGCGCGGTACCGATCGTACACGCTCACCGCGTTGCCTGGTGCCATCGGATTTCGGCAAACTTTGGATCGATTTTCGGCGCATACGTTGCCTCCGATCGTTCTGCACGGTTAGCCGCTGGTAGTAGCCCTCCAGGTCCTCGATGCAGGTGACCAAGCAGTCGGCACCGATCGCGGCCAGACCGGTCGTGCAGCTCGGGCATTAGCGTGTCGCGCCCGATGCTGACCGCCGACTGGAGCAGTATTTCCCCGACGTACGAACTGTTTCGGCTTGATGCGCATGAT]

[+] EMBL AL696776             [GCAAGAATCGCCACGAGGTTATTTCGCATTAAATAAAATTTCCTATTCGTACTGCCTGTTTTTAACTATCTCTTAAATCGCGCTGTCACTTAAAGTACCGGTCCGATCGGTTCACCTTGCTCAGGAAGCCGTTGTAAAAGTCTTGCCCCGACAGTGTCTTCTTTCCGCCGACGGATAGCTGCAACAGTTCTAGCGCTCGACCGTCACCGACCGAACCAGCAGCTGCCTGCTGCGCTTGGAGTATTCGAGCTGGCCGGGCCGGTCCGCCGGCACTGCGGGTACCGATTGCGTGCTGTCGAAGGATAGTTTAAACAGCTTCACTAGCTCCCCCCCAAAGTTGGTGAGCAGTGGGCGCAGACCGTACAGGGCGCGGTACCGATCGTACACGCTCACCGCGTTGCCTGGTGCCATCGGATTTCGGCAAACTTTGGATCGATTTTCGGCGCATACGTTGCCTCCGATCGTTCTGCACGGTTAGCCGCTGGTAGTAGCCCTCCAGGTCCTCGATGCAGGTGACCAAGCAGTCGGCACCGATCGCGGCCAGACCGGTCGTGCAGCTCGGGCATTAGCGTGTCGCGCCCGATGCTGACCGCCGACTGGAGCAGTATTTCCCCGACGTACGAACTGTTTCGGCTTGATGCGCATGAT]




>consensus_2252#0
GCAAGAATCGCCACGAGGTTATTTCGCATTAAATAAAATTTCCTATTCGTACTGCCTGTT
TTTAACTATCTCTTAAATCGCGCTGTCACTTAAAGTACCGGTCCGATCGGTTCACCTTGC
TCAGGAAGCCGTTGTAAAAGTCTTGCCCCGACAGTGTCTTCTTTCCGCCGACGGATAGCT
GCAACAGTTCTAGCGCTCGACCGTCACCGACCGAACCAGCAGCTGCCTGCTGCGCTTGGA
GTATTCGAGCTGGCCGGGCCGGTCCGCCGGCACTGCGGGTACCGATTGCGTGCTGTCGAA
GGATAGTTTAAACAGCTTCACTAGCTCCCCCCCAAAGTTGGTGAGCAGTGGGCGCAGACC
GTACAGGGCGCGGTACCGATCGTACACGCTCACCGCGTTGCCTGGTGCCATCGGATTTCG
GCAAACTTTGGATCGATTTTCGGCGCATACGTTGCCTCCGATCGTTCTGCACGGTTAGCC
GCTGGTAGTAGCCCTCCAGGTCCTCGATGCAGGTGACCAAGCAGTCGGCACCGATCGCGG
CCAGACCGGTCGTGCAGCTCGGGCATTAGCGTGTCGCGCCCGATGCTGACCGCCGACTGG
AGCAGTATTTCCCCGACGTACGAACTGTTTCGGCTTGATGCGCATGAT

consensusID : consensus_2252#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [TACCCTGGTATACCCNTCAGGTCCTGATGCAGTGACCAAACAGTTCGGCACCGATCCGCNCCACCGTCGTCCAGCTCGGGCAATTAGCGTGTCGCGCCCGATGCTGACCCGCCGACTGGAGCAAGTATTTCCCCGACGTCGAACTGTTTCGGGCTTGATGGCCAGCAATGATGCCATGATGCCCGGTCCAGCTGCTCGCCGTTCGCGTATGGCGTGCACGATCGGGCCGCGCCGCNGCAGCTTGGGCAGTAGGCTAGCGTGCACATTAAGCATTCCCCGATCGTAAGCATATCGATGAACGTCTCCCGGTATGAGGTGGCCGNTACGAAACGACCACGCCGAGATCGAACCTGCCCGGCAGTGGCAGGCGTACAGGCGGCCCATATCGTGCAGCAGTGCAGGCCAGTCAGGCTCAGGCTAGTACTGGCTTCCACCAGGTTTTTTCGCACGGCANTTATANACTGACGTAACCCACCCTGCGGAGGCCAGCTCCACTCGCCCAATAAANCTTAGNCTAAGTTTTGGCTAGAATNGCCTTTTACAAGACTTGGGCCCAGTGTNGAATNTGTGCTCCGTCCT]

[-] EMBL AL933718             [TACCCTGGTATACCCNTCAGGTCCTGATGCAGTGACCAAACAGTTCGGCACCGATCCGCNCCACCGTCGTCCAGCTCGGGCAATTAGCGTGTCGCGCCCGATGCTGACCCGCCGACTGGAGCAAGTATTTCCCCGACGTCGAACTGTTTCGGGCTTGATGGCCAGCAATGATGCCATGATGCCCGGTCCAGCTGCTCGCCGTTCGCGTATGGCGTGCACGATCGGGCCGCGCCGCNGCAGCTTGGGCAGTAGGCTAGCGTGCACATTAAGCATTCCCCGATCGTAAGCATATCGATGAACGTCTCCCGGTATGAGGTGGCCGNTACGAAACGACCACGCCGAGATCGAACCTGCCCGGCAGTGGCAGGCGTACAGGCGGCCCATATCGTGCAGCAGTGCAGGCCAGTCAGGCTCAGGCTAGTACTGGCTTCCACCAGGTTTTTTCGCACGGCANTTATANACTGACGTAACCCACCCTGCGGAGGCCAGCTCCACTCGCCCAATAAANCTTAGNCTAAGTTTTGGCTAGAATNGCCTTTTACAAGACTTGGGCCCAGTGTNGAATNTGTGCTCCGTCCT]




>consensus_2252#1
TACCCTGGTATACCCNTCAGGTCCTGATGCAGTGACCAAACAGTTCGGCACCGATCCGCN
CCACCGTCGTCCAGCTCGGGCAATTAGCGTGTCGCGCCCGATGCTGACCCGCCGACTGGA
GCAAGTATTTCCCCGACGTCGAACTGTTTCGGGCTTGATGGCCAGCAATGATGCCATGAT
GCCCGGTCCAGCTGCTCGCCGTTCGCGTATGGCGTGCACGATCGGGCCGCGCCGCNGCAG
CTTGGGCAGTAGGCTAGCGTGCACATTAAGCATTCCCCGATCGTAAGCATATCGATGAAC
GTCTCCCGGTATGAGGTGGCCGNTACGAAACGACCACGCCGAGATCGAACCTGCCCGGCA
GTGGCAGGCGTACAGGCGGCCCATATCGTGCAGCAGTGCAGGCCAGTCAGGCTCAGGCTA
GTACTGGCTTCCACCAGGTTTTTTCGCACGGCANTTATANACTGACGTAACCCACCCTGC
GGAGGCCAGCTCCACTCGCCCAATAAANCTTAGNCTAAGTTTTGGCTAGAATNGCCTTTT
ACAAGACTTGGGCCCAGTGTNGAATNTGTGCTCCGTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2252#0      ---GCAAGAATCGCCACGAGGTTATTTCGCATTAAATAAAATTTCCTATTCGTACTGCCT 57
consensus_2252#1      TACCCTGGTATACCCNTCAGGTCCTGATGCAGTGACCAAACAGTTCGGCAC---CGATCC 57
                          *  * **  **   ****  *   *** * *  ***   * *    *   *   * 

consensus_2252#0      GTTTTTAACTATCTCTTAAATCGCGCTGTCACTTAAAGTACCG-GTCCGATCGGTTCACC 116
consensus_2252#1      GCNCC--ACCGTCGTCCAGCTCGGG----CAATTAGCGTGTCGCGCCCGAT--GCTGACC 109
                      *      **  **    *  *** *    ** ***  **  ** * *****  * * ***

consensus_2252#0      TTGCTCAGGAAGCCGTTGTAAAAGTCTTGCCCCGACAGTGTCTTCTTTCCGCCGACGGAT 176
consensus_2252#1      CGCCGACTGGAGC--------AAGTATTTCCCCGACGTCGAACTGTTTCGGGC--TTGAT 159
                         *    * ***        **** ** *******   *   * **** * *    ***

consensus_2252#0      AGCTGCAACAGTTCTAGCGCTCGACCGTCACCGACCGAACCAGCAGCTGCCTGCT-GCGC 235
consensus_2252#1      GGC--CAGCAATGATG--------CCATGAT-GCCCGGTCCAGCTGCTCGCCGTTCGCGT 208
                       **  ** ** *  *         ** * *  * ***  ***** ***  * * * *** 

consensus_2252#0      TTGGAGTATTCGAGCTGGCCGGGCCGGTCC-GCCGGCACTGCGGG-TACCGATTGCGTGC 293
consensus_2252#1      ATGGCGTGCACGATCGGGCCGCGCCGCNGCAGCTTGGGCAGTAGGCTAGCGTGCACATTA 268
                       *** **   *** * ***** ****   * **  *  * *  ** ** **    * *  

consensus_2252#0      TGTCGAAGGATAGTTTAAACAGCTTCACTAGCTCCCCCCCAAAGTTGGTGAGCAGTGGGC 353
consensus_2252#1      AGCATTCCCCGATCGTAAGCATATCGATGAACGTCTCCCGGTATGAGGTGGCCGNTACGA 328
                       *         *   *** **  *  *  * *  * ***   *   ****  *  *  * 

consensus_2252#0      GCAGACCGTACAGGGCGCGGTACCGATCGTACACGCTCACCGCGTTGCCTGGTGCCATCG 413
consensus_2252#1      AACGACCACGCCGAGATCGAACCTGCCCGGCAGTGGCAGGCGTACAGGCGGCCCATATCG 388
                         ****   * * *  **   * *  **     *     **    * * *     ****

consensus_2252#0      GATTTCGGCAAACTTTGGATCGATTTTCGGCGCATACGTTGCCTCCGATCGTTCTGCACG 473
consensus_2252#1      TGCAGCAGTGCAGGCCAG-TCAGGCTCAGGCTAGTAC-TGGCTTCCACCAGGTTTTTTCG 446
                           * *   *     * **    *  ***   *** * ** ***    * * *   **

consensus_2252#0      GTTAGCCGCTGGTAGTAGCCCTCCAGGTCCTCGATGCAGGTGACCAAGCAGTCGGCACCG 533
consensus_2252#1      CACGGCANTTATANACTGACGT---AACCCACCCTGCGGA---------GGCCAGCTCCA 494
                          **   *       * * *      ** *  *** *           * * ** ** 

consensus_2252#0      ATCGCGGCCAGACCGGTCGTGCAGCTCGGGCATTAGCGTGTCGCGCCCGATGCT-GACCG 592
consensus_2252#1      CTCGC---CCAATAAANCTT--AGNCTAAGTTTTGGCTAGAATNGCCTTTTACAAGACTT 549
                       ****   *  *     * *  **     *  ** **  *    ***   * *  ***  

consensus_2252#0      CCGACTGGAGCAGTATTTCCCCGACGTACGAACTGTTTCGGCTTGATGCGCATGAT 648
consensus_2252#1      GGGCCCAGTGTNGAATNTGTGCTCCGTCCT-------------------------- 579
                        * *  * *  * ** *   *  *** *