cluster # 2262

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Anopheles gambiae
cluster # 2262 cluster # 2262 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2262#0 length = 537 sequences # 1

consensus_2262#1 length = 535 sequences # 1

consensusID : consensus_2262#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence

                              [CCGGCTGCTACTGCTCGCTGTCGAAAGTTTCTCGCGGGCACAGGCAGCGGCCAATGATTACCCTGCCCAGCAGCACCAGCACCTGAGAAATCAGCAGCATCACCAGCACCAACATCACCACAGACACCGAACGGCCGAGCCGAGCAGGAGTCGGAACCAGACGTCCTTAAACTACGCGCTAATAAGTGGCCCCGGGAGCGTGGGTAATGGAGGGAGCGATTATCGGCCACCGTACCAGTACCCGGGCACTACTGGACAGCAGCACTGGGGGAACCATCACGGGAACCAGCCGCAACACCATCATCGCGAGACGCCACCGCAGCATCGGCGCCATCATCGCGGTCAGGCCCATCCTTCCCATTCGCAGCCGTCATCGCCGCCGGGAGCGGCTGGCTGGCGCAGGACATCCGGGAATGGTGGTGTGCCAGCGGCACGTCCGGTCACCCGTATGCTTACGCGCAGTGGGACGGTTGGAAGTGCGCGCCACAACAACAGTACGAGTGGCAAAAACGTGTGCACCGTGCATGTGTATCGCAA]

[+] EMBL BM657578             [CCGGCTGCTACTGCTCGCTGTCGAAAGTTTCTCGCGGGCACAGGCAGCGGCCAATGATTACCCTGCCCAGCAGCACCAGCACCTGAGAAATCAGCAGCATCACCAGCACCAACATCACCACAGACACCGAACGGCCGAGCCGAGCAGGAGTCGGAACCAGACGTCCTTAAACTACGCGCTAATAAGTGGCCCCGGGAGCGTGGGTAATGGAGGGAGCGATTATCGGCCACCGTACCAGTACCCGGGCACTACTGGACAGCAGCACTGGGGGAACCATCACGGGAACCAGCCGCAACACCATCATCGCGAGACGCCACCGCAGCATCGGCGCCATCATCGCGGTCAGGCCCATCCTTCCCATTCGCAGCCGTCATCGCCGCCGGGAGCGGCTGGCTGGCGCAGGACATCCGGGAATGGTGGTGTGCCAGCGGCACGTCCGGTCACCCGTATGCTTACGCGCAGTGGGACGGTTGGAAGTGCGCGCCACAACAACAGTACGAGTGGCAAAAACGTGTGCACCGTGCATGTGTATCGCAA]




>consensus_2262#0
CCGGCTGCTACTGCTCGCTGTCGAAAGTTTCTCGCGGGCACAGGCAGCGGCCAATGATTA
CCCTGCCCAGCAGCACCAGCACCTGAGAAATCAGCAGCATCACCAGCACCAACATCACCA
CAGACACCGAACGGCCGAGCCGAGCAGGAGTCGGAACCAGACGTCCTTAAACTACGCGCT
AATAAGTGGCCCCGGGAGCGTGGGTAATGGAGGGAGCGATTATCGGCCACCGTACCAGTA
CCCGGGCACTACTGGACAGCAGCACTGGGGGAACCATCACGGGAACCAGCCGCAACACCA
TCATCGCGAGACGCCACCGCAGCATCGGCGCCATCATCGCGGTCAGGCCCATCCTTCCCA
TTCGCAGCCGTCATCGCCGCCGGGAGCGGCTGGCTGGCGCAGGACATCCGGGAATGGTGG
TGTGCCAGCGGCACGTCCGGTCACCCGTATGCTTACGCGCAGTGGGACGGTTGGAAGTGC
GCGCCACAACAACAGTACGAGTGGCAAAAACGTGTGCACCGTGCATGTGTATCGCAA

consensusID : consensus_2262#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence

                              [TCGAGGCAGAATTGCCCCGCGNCTCATATTCNGTCTNTTCTGTTTCATTGCNTCGGATAGACGTCTTAAACTACGCGCTAATAAGTGGCCCGGGAGCGTGGGTAATGGAGGGAGCGATTATCGGCACCGTACCAGTACCCCCCCCCAGGGGGCACTACTTGGACAGCAGCACTGGGGGAAAACCCCAATCACACCCTGGATGGGTTGTAAACAACTCCAAAGNTTCTCCCGGNTGCCCTAAAAAAAAATCCGAAAAACCGTCCATAAAGTTNTCGCAAAGATTTCCAGGTGCCCGGGTAANGGTGAATCAGGTCNCCAAGATCCNCAGGATGCNANAGGACGAAAGTTACTGAGGNCAGGCCCCAAGTTACAATACCCAGAGCGTGTAGGGTTTCCCAANGGGGACCACGCCAAAATNCCTCGTTTGAGTCGTCNCCAAGTTATCCAGGACTAAAGGCCCCCTGGGTNCGAAGTTGCAACGGAGCCAGGCCCCTGGTGGAGTANGGACTGGAGGCGCATTTGGTGTCTCTTTTGG]

[+] EMBL AL696850             [TCGAGGCAGAATTGCCCCGCGNCTCATATTCNGTCTNTTCTGTTTCATTGCNTCGGATAGACGTCTTAAACTACGCGCTAATAAGTGGCCCGGGAGCGTGGGTAATGGAGGGAGCGATTATCGGCACCGTACCAGTACCCCCCCCCAGGGGGCACTACTTGGACAGCAGCACTGGGGGAAAACCCCAATCACACCCTGGATGGGTTGTAAACAACTCCAAAGNTTCTCCCGGNTGCCCTAAAAAAAAATCCGAAAAACCGTCCATAAAGTTNTCGCAAAGATTTCCAGGTGCCCGGGTAANGGTGAATCAGGTCNCCAAGATCCNCAGGATGCNANAGGACGAAAGTTACTGAGGNCAGGCCCCAAGTTACAATACCCAGAGCGTGTAGGGTTTCCCAANGGGGACCACGCCAAAATNCCTCGTTTGAGTCGTCNCCAAGTTATCCAGGACTAAAGGCCCCCTGGGTNCGAAGTTGCAACGGAGCCAGGCCCCTGGTGGAGTANGGACTGGAGGCGCATTTGGTGTCTCTTTTGG]




>consensus_2262#1
TCGAGGCAGAATTGCCCCGCGNCTCATATTCNGTCTNTTCTGTTTCATTGCNTCGGATAG
ACGTCTTAAACTACGCGCTAATAAGTGGCCCGGGAGCGTGGGTAATGGAGGGAGCGATTA
TCGGCACCGTACCAGTACCCCCCCCCAGGGGGCACTACTTGGACAGCAGCACTGGGGGAA
AACCCCAATCACACCCTGGATGGGTTGTAAACAACTCCAAAGNTTCTCCCGGNTGCCCTA
AAAAAAAATCCGAAAAACCGTCCATAAAGTTNTCGCAAAGATTTCCAGGTGCCCGGGTAA
NGGTGAATCAGGTCNCCAAGATCCNCAGGATGCNANAGGACGAAAGTTACTGAGGNCAGG
CCCCAAGTTACAATACCCAGAGCGTGTAGGGTTTCCCAANGGGGACCACGCCAAAATNCC
TCGTTTGAGTCGTCNCCAAGTTATCCAGGACTAAAGGCCCCCTGGGTNCGAAGTTGCAAC
GGAGCCAGGCCCCTGGTGGAGTANGGACTGGAGGCGCATTTGGTGTCTCTTTTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2262#0      ---------------CCGGCTGCTACTGCTCGCTGTCGAAAGTTTCTCGCGGGCACAGGC 45
consensus_2262#1      TCGAGGCAGAATTGCCCCGCGNCTCATATTC--NGTCTNTTCTGTTTCATTGCNTCGGAT 58
                                     ** **  **  *  **   ***     * * **   *   * *  

consensus_2262#0      AGCGGCCAATGATTACCC--TGCCCAGCAGCACCAGCACCTGAGAAATCAGCAGCATCAC 103
consensus_2262#1      AGACGTCTTAAACTACGCGCTAATAAGTGGCCCGGGAGCGTGGGTAATGGAGGGAGCGAT 118
                      **  * *    * *** *  *    **  ** *  *  * ** * ***     *    * 

consensus_2262#0      CAGCACCAACATCACCACAGACACCGAACGGCCGAGCCGAGCAGGAGTCGGAACCAGACG 163
consensus_2262#1      TATCGGCACCGT-ACCA-GTACCCC---CCCCCAGG--GGGCACTACTTGGA--CAGCAG 169
                       * *  ** * * ****   ** **   *  **  *  * ***  * * ***  ***  *

consensus_2262#0      TCCTTAAACTACGCGCTAATAAGTGGCCCCGGGAGCGTGGGTAATGGAGGGAGCGATTAT 223
consensus_2262#1      CACTGGGGGAAAACCCCAATCAC--ACCCTGGATGGGTTGTAAACAACTCCAAAGNTTCT 227
                        **      *  * * *** *    *** **  * ** *  **       *  * ** *

consensus_2262#0      C--GGCCACCGTACCAGTACCCGGGCACTACTGGACA-GCAGCACTGGGGGAACCATCAC 280
consensus_2262#1      CCCGGNTGCCCTAAAAAAAAATCCGAAAAACCGTCCATAAAGTTNTCGCAAAGATTTCCA 287
                      *  **   ** **  *  *     * *  ** *  **   **   * *   *    **  

consensus_2262#0      GGGAACCAGCCGCAACACCATCA--TCGCGAGACGCCACCGCA-GCATCGGCGCCATCAT 337
consensus_2262#1      GGTGCCCGGGTAANGGTGAATCAGGTCNCCAAGATCCNCAGGATGCNANAGGACGAAAGT 347
                      **   ** *          ****  ** * *    ** * * * **    *  * *   *

consensus_2262#0      CGCGGTCAGGCCCATCCTTCCCATTCGCAGCCGTCATCGCCGCCGGGAGCGGCTGGCTGG 397
consensus_2262#1      TAC--TGAGGNCAGGCC--CCAAGTTACAATACCCAGAG----CGTGTAGGGTTTCCCAA 399
                        *  * *** *   **  ** * *  **     **  *    ** *   ** *  *   

consensus_2262#0      CGCAGGACATCCGGGAATGGTGGTGTGCCAGCGGCACGTCCGGTCACCCGTATGCTTACG 457
consensus_2262#1      NGGGGACCACGCCAAAATNCCT-CGTTTGAGTCGT-CNCCAAGTTATCCAGGACTAAAGG 457
                       *  *  **  *   ***      **   **  *  *  *  ** * **        * *

consensus_2262#0      CGCAGTGGGACGGTTGGAAGTGCGCGCCACAACAACAGTACGAGTGGCAAAAACGTGTGC 517
consensus_2262#1      CCCCCTGGGTNCGAAGTTGCAACGGAGCCAGGCCCCTGGTGGAGTANGGACTGGAGGCGC 517
                      * *  ****   *  *      **   *    *  * *   ****    *      * **

consensus_2262#0      ACCGTGCATGTGTATCGCAA 537
consensus_2262#1      ATTTGGTGTCTCTTTTGG-- 535
                      *    *  * * * * *