cluster # 2268

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2268 cluster # 2268 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2268#0 length = 557 sequences # 1

consensus_2268#1 length = 237 sequences # 1

consensusID : consensus_2268#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [CCGCCCACGCGTCCGCTGGTCGCATGCTGTCGCGTCGTCTGGCGGTTGGTGTCTCCCGTGTGCTTGAGCTGTGCTGTGTGTAAAGACGTGGTGGGTGAACGAAACGAGAAGAAAAAAAGAACGAATGTGCGTCGACTGAACCGTTGTCGTCGTCGTCAATGATTGGGCCGCCGTTCAGTGGTTGCGTAAGATAACGGCTGCGCCGAGCGTGTAAGGAGATCGAGACTGGAAGAAAACAGCACAAGAGAGCCACAGAGCACTGGGACGGAGGGTTGATTTTCGGCATTGAGCGGCTTTTGGATAAGGCAGGCGGCATAATCCCCCTCCCCCAGTACCGTGCAGCAGTAAAAGGGCAGGCTGAAGCAGACAGCTGGGCTGGAGTGATCAACTGTTGACTGGAGCCGTTTGTAGAGGCTTAAGCCGAGAAGATGTCTGCTATCAGACATCGACCTCTGGCAAATGGTCCCAACGAGAGCGATGACAACTTTTCCGACGACGAAAGCACGCCCTTGACGCATGACATCTATGGAGGAAGTCAGCGCACCGTGCAGGAAACG]

[+] EMBL BM598910             [CCGCCCACGCGTCCGCTGGTCGCATGCTGTCGCGTCGTCTGGCGGTTGGTGTCTCCCGTGTGCTTGAGCTGTGCTGTGTGTAAAGACGTGGTGGGTGAACGAAACGAGAAGAAAAAAAGAACGAATGTGCGTCGACTGAACCGTTGTCGTCGTCGTCAATGATTGGGCCGCCGTTCAGTGGTTGCGTAAGATAACGGCTGCGCCGAGCGTGTAAGGAGATCGAGACTGGAAGAAAACAGCACAAGAGAGCCACAGAGCACTGGGACGGAGGGTTGATTTTCGGCATTGAGCGGCTTTTGGATAAGGCAGGCGGCATAATCCCCCTCCCCCAGTACCGTGCAGCAGTAAAAGGGCAGGCTGAAGCAGACAGCTGGGCTGGAGTGATCAACTGTTGACTGGAGCCGTTTGTAGAGGCTTAAGCCGAGAAGATGTCTGCTATCAGACATCGACCTCTGGCAAATGGTCCCAACGAGAGCGATGACAACTTTTCCGACGACGAAAGCACGCCCTTGACGCATGACATCTATGGAGGAAGTCAGCGCACCGTGCAGGAAACG]




>consensus_2268#0
CCGCCCACGCGTCCGCTGGTCGCATGCTGTCGCGTCGTCTGGCGGTTGGTGTCTCCCGTG
TGCTTGAGCTGTGCTGTGTGTAAAGACGTGGTGGGTGAACGAAACGAGAAGAAAAAAAGA
ACGAATGTGCGTCGACTGAACCGTTGTCGTCGTCGTCAATGATTGGGCCGCCGTTCAGTG
GTTGCGTAAGATAACGGCTGCGCCGAGCGTGTAAGGAGATCGAGACTGGAAGAAAACAGC
ACAAGAGAGCCACAGAGCACTGGGACGGAGGGTTGATTTTCGGCATTGAGCGGCTTTTGG
ATAAGGCAGGCGGCATAATCCCCCTCCCCCAGTACCGTGCAGCAGTAAAAGGGCAGGCTG
AAGCAGACAGCTGGGCTGGAGTGATCAACTGTTGACTGGAGCCGTTTGTAGAGGCTTAAG
CCGAGAAGATGTCTGCTATCAGACATCGACCTCTGGCAAATGGTCCCAACGAGAGCGATG
ACAACTTTTCCGACGACGAAAGCACGCCCTTGACGCATGACATCTATGGAGGAAGTCAGC
GCACCGTGCAGGAAACG

consensusID : consensus_2268#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 237
fasta sequence

                              [CCGGTCGCATGCTGTCGCGTCGTCTGGCGGTTGGTGTCTCTCGTGTGCTTGAGCTGTGCTGTGTGTTAAGACGTGGTGGGTGAACGAAACGAAAAGAAAAAAAGCAACGAAGTGAGTTGGGTTTCTTTGAGTGCAACCAATTCCCGTACACGCAGTGTGGCGGATTTCCTTTTCGCTTTTAGTATCTTGATCGCTGCACTGTGGGGGGGAATTTTCACTCGTTTCGCTTTCCATCTC]

[+] EMBL BM630533             [CCGGTCGCATGCTGTCGCGTCGTCTGGCGGTTGGTGTCTCTCGTGTGCTTGAGCTGTGCTGTGTGTTAAGACGTGGTGGGTGAACGAAACGAAAAGAAAAAAAGCAACGAAGTGAGTTGGGTTTCTTTGAGTGCAACCAATTCCCGTACACGCAGTGTGGCGGATTTCCTTTTCGCTTTTAGTATCTTGATCGCTGCACTGTGGGGGGGAATTTTCACTCGTTTCGCTTTCCATCTC]




>consensus_2268#1
CCGGTCGCATGCTGTCGCGTCGTCTGGCGGTTGGTGTCTCTCGTGTGCTTGAGCTGTGCT
GTGTGTTAAGACGTGGTGGGTGAACGAAACGAAAAGAAAAAAAGCAACGAAGTGAGTTGG
GTTTCTTTGAGTGCAACCAATTCCCGTACACGCAGTGTGGCGGATTTCCTTTTCGCTTTT
AGTATCTTGATCGCTGCACTGTGGGGGGGAATTTTCACTCGTTTCGCTTTCCATCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2268#0      CCGCCCACGCGTCCGCTGGTCGCATGCTGTCGCGTCGTCTGGCGGTTGGTGTCTCCCGTG 60
consensus_2268#1      ---------------CCGGTCGCATGCTGTCGCGTCGTCTGGCGGTTGGTGTCTCTCGTG 45
                                     * ************************************** ****

consensus_2268#0      TGCTTGAGCTGTGCTGTGTGTAAAGACGTGGTGGGTGAACGAAACGAGAAGAAAAAAAGA 120
consensus_2268#1      TGCTTGAGCTGTGCTGTGTGTTAAGACGTGGTGGGTGAACGAAACGAAAAGAAAAAAAGC 105
                      ********************* ************************* *********** 

consensus_2268#0      ACGAATGTGCGTCGACTGAACCGTTGTCGTCGTCGTCAATGATTGGGCCGCCGTTCAGTG 180
consensus_2268#1      AACGAAGTGAGT----TGGGTTTCTTTGAGTGCAACCAAT--------TCCCGTACACGC 153
                      *   * *** **    **      * *    *    ****          **** **   

consensus_2268#0      GTTGCGTAAGATAACGGCTGCGCCGAGCGTGTAAGGAGATCGAGACTG-GAAGAAAACAG 239
consensus_2268#1      AGTGTGGCGGATTTCCTTTTCGCTTTTAGTATCTTGATCGCTGCACTGTGGGGGGGAATT 213
                        ** *   ***  *   * ***     ** *   **   *   **** *  *   *   

consensus_2268#0      CACAAGAGAGCCACAGAGCACTGGGACGGAGGGTTGATTTTCGGCATTGAGCGGCTTTTG 299
consensus_2268#1      TTCACTCGTTTCGCTTTCCATCTC------------------------------------ 237
                        **   *   * *    **                                        

consensus_2268#0      GATAAGGCAGGCGGCATAATCCCCCTCCCCCAGTACCGTGCAGCAGTAAAAGGGCAGGCT 359
consensus_2268#1      ------------------------------------------------------------
                                                                                  

consensus_2268#0      GAAGCAGACAGCTGGGCTGGAGTGATCAACTGTTGACTGGAGCCGTTTGTAGAGGCTTAA 419
consensus_2268#1      ------------------------------------------------------------
                                                                                  

consensus_2268#0      GCCGAGAAGATGTCTGCTATCAGACATCGACCTCTGGCAAATGGTCCCAACGAGAGCGAT 479
consensus_2268#1      ------------------------------------------------------------
                                                                                  

consensus_2268#0      GACAACTTTTCCGACGACGAAAGCACGCCCTTGACGCATGACATCTATGGAGGAAGTCAG 539
consensus_2268#1      ------------------------------------------------------------
                                                                                  

consensus_2268#0      CGCACCGTGCAGGAAACG 557
consensus_2268#1      ------------------