cluster # 2269

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Anopheles gambiae
cluster # 2269 cluster # 2269 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2269#0 length = 537 sequences # 1

consensus_2269#1 length = 176 sequences # 1

consensusID : consensus_2269#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence

                              [GCAGAATCGCCCCGCCAGGTTCTAAAATCATCGACAGTGCTGAACACGTAAAAAGCATTGCCATTGTAACGAAACAAGGTTCGTAAACAAGCGATGTTTCGGGATTGTAGCGACAATGATTGAGCAACAACGCGATGGACTTGAAGGTAGGATGATAAAATTAGATTAGAAATATTTTTTTGGCTGATGAATACACAAACAAAAAAAAAAAAAAATTTAAAAGATAAATATTTGAAAAAAGGTCGCCATACCGCCGCGTTACATGCTATAGATACAAGGTACGGCAGATACCATGAAATGCATCATGGTGGAATGGAGTAAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGCGCAAGTAAATTTAAACATTGTAAACTGAAACTTGTGTAGAGGTCTGTTGAACGTGGTGTGAAGTGGCGATTCGTGTGTGCATTAAGCTGACGCTGAATATTCAGATGACGGACACATTAATCGAGCATGAGGGTGGACGTGTAGTGAGTTAAGGATTAACATTCGGTTAAAATTTTG]

[+] EMBL AL696912             [GCAGAATCGCCCCGCCAGGTTCTAAAATCATCGACAGTGCTGAACACGTAAAAAGCATTGCCATTGTAACGAAACAAGGTTCGTAAACAAGCGATGTTTCGGGATTGTAGCGACAATGATTGAGCAACAACGCGATGGACTTGAAGGTAGGATGATAAAATTAGATTAGAAATATTTTTTTGGCTGATGAATACACAAACAAAAAAAAAAAAAAATTTAAAAGATAAATATTTGAAAAAAGGTCGCCATACCGCCGCGTTACATGCTATAGATACAAGGTACGGCAGATACCATGAAATGCATCATGGTGGAATGGAGTAAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGCGCAAGTAAATTTAAACATTGTAAACTGAAACTTGTGTAGAGGTCTGTTGAACGTGGTGTGAAGTGGCGATTCGTGTGTGCATTAAGCTGACGCTGAATATTCAGATGACGGACACATTAATCGAGCATGAGGGTGGACGTGTAGTGAGTTAAGGATTAACATTCGGTTAAAATTTTG]




>consensus_2269#0
GCAGAATCGCCCCGCCAGGTTCTAAAATCATCGACAGTGCTGAACACGTAAAAAGCATTG
CCATTGTAACGAAACAAGGTTCGTAAACAAGCGATGTTTCGGGATTGTAGCGACAATGAT
TGAGCAACAACGCGATGGACTTGAAGGTAGGATGATAAAATTAGATTAGAAATATTTTTT
TGGCTGATGAATACACAAACAAAAAAAAAAAAAAATTTAAAAGATAAATATTTGAAAAAA
GGTCGCCATACCGCCGCGTTACATGCTATAGATACAAGGTACGGCAGATACCATGAAATG
CATCATGGTGGAATGGAGTAAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGC
GCAAGTAAATTTAAACATTGTAAACTGAAACTTGTGTAGAGGTCTGTTGAACGTGGTGTG
AAGTGGCGATTCGTGTGTGCATTAAGCTGACGCTGAATATTCAGATGACGGACACATTAA
TCGAGCATGAGGGTGGACGTGTAGTGAGTTAAGGATTAACATTCGGTTAAAATTTTG

consensusID : consensus_2269#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 176
fasta sequence

                              [ATCAGCCNAAAAAAAAAAAAAAACTTAAAAGATAAATATTTGAAAAAGTCNCCGTACATGCTATAGATACAAGTACNCAGATACATGAAATGCATCATGGTGAATGGAGTAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGCGTAAGTAAATTTAAAATTGTAAACTG]

[+] EMBL BX628995             [ATCAGCCNAAAAAAAAAAAAAAACTTAAAAGATAAATATTTGAAAAAGTCNCCGTACATGCTATAGATACAAGTACNCAGATACATGAAATGCATCATGGTGAATGGAGTAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGCGTAAGTAAATTTAAAATTGTAAACTG]




>consensus_2269#1
ATCAGCCNAAAAAAAAAAAAAAACTTAAAAGATAAATATTTGAAAAAGTCNCCGTACATG
CTATAGATACAAGTACNCAGATACATGAAATGCATCATGGTGAATGGAGTAAGACACGAC
CCAAGCTCTTTAGTTGAACGAATCTGATGCGTAAGTAAATTTAAAATTGTAAACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2269#0      GCAGAATCGCCCCGCCAGGTTCTAAAATCATCGACAGTGCTGAACACGTAAAAAGCATTG 60
consensus_2269#1      ------------------------------------------------------------
                                                                                  

consensus_2269#0      CCATTGTAACGAAACAAGGTTCGTAAACAAGCGATGTTTCGGGATTGTAGCGACAATGAT 120
consensus_2269#1      ------------------------------------------------------------
                                                                                  

consensus_2269#0      TGAGCAACAACGCGATGGACTTGAAGGTAGGATGATAAAATTAGATTAGAAATATTTTTT 180
consensus_2269#1      ------------------------------------------------------------
                                                                                  

consensus_2269#0      TGGCTGATGAATACACAAACAAAAAAAAAAAAAAATTTAAAAGATAAATATTTGAAAAAA 240
consensus_2269#1      ------------ATCAGCCNAAAAAAAAAAAAAAACTTAAAAGATAAATATTTGAAAAA- 47
                                  *       *************** *********************** 

consensus_2269#0      GGTCGCCATACCGCCGCGTTACATGCTATAGATACAAGGTACGGCAGATACCATGAAATG 300
consensus_2269#1      -GTCNCCGTAC-----------ATGCTATAGATACAAG-TACN-CAGATAC-ATGAAATG 92
                       *** ** ***           **************** ***  ******* ********

consensus_2269#0      CATCATGGTGGAATGGAGTAAAGACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGC 360
consensus_2269#1      CATCATGGTG-AATGGAGTAA-GACACGACCCAAGCTCTTTAGTTGAACGAATCTGATGC 150
                      ********** ********** **************************************

consensus_2269#0      GCAAGTAAATTTAAACATTGTAAACTGAAACTTGTGTAGAGGTCTGTTGAACGTGGTGTG 420
consensus_2269#1      GTAAGTAAATTTAAA-ATTGTAAACTG--------------------------------- 176
                      * ************* ***********                                 

consensus_2269#0      AAGTGGCGATTCGTGTGTGCATTAAGCTGACGCTGAATATTCAGATGACGGACACATTAA 480
consensus_2269#1      ------------------------------------------------------------
                                                                                  

consensus_2269#0      TCGAGCATGAGGGTGGACGTGTAGTGAGTTAAGGATTAACATTCGGTTAAAATTTTG 537
consensus_2269#1      ---------------------------------------------------------