cluster # 227

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Anopheles gambiae
cluster # 227 cluster # 227 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_227#0 length = 673 sequences # 1

consensus_227#1 length = 640 sequences # 1

consensusID : consensus_227#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [GCCGCCGCTAAACGTCATCAACCTTTGCGTCACTTGCGGACTGTTGGGCGGCCCAGCGTCCGTCGGCACGTGATTGCGGTATGACCCACACCGGACTAAGGAGGAAATTGAGTTGCTGCTGTCCAAACAAGAACCTAAACGTTCTTCCTCATTTCCTCATTTGCGGAGAGCGCAAACTGTTCTACACGCTTCTTTCACACATCGACAGGTCGATGTAGCTTTTAGAAAGATTAATTTATGACACTTTTAGGCAACGATTAGTTACTGCTTCTAGGAATGATAGTTAGTGATGATCATACATTACGTTTATATTTGTAATAATTTTCCTCAAATCATGTTTCCTCCATCACAACATTGAACTGGAACCTTAGGGTGGCCCTTTCTGTTAGAATGTTTAGGATATTTCTCATTTAATATTTATTAAACGCGAGCGCAAGCCATAAAACCCAGTCGACAGCTGGAACTTACTCTCGAATTCCTTCACATACGTAAAGAATCAAGTGATGGCTCGAAATAAGTGCAAGAATTGTGCTGTATTGCTTCATAAGATTACAAAGAAATGTAAAATCGCACACAAAACACTCGACACCCCTATCCCTCTATCGTGTAACCGTGTTCGTCATGATGCCCAGGCGAGCACCCCTGTCTGACACCGCGCTGCCATTCGTAGTGT]

[+] EMBL BX612053             [GCCGCCGCTAAACGTCATCAACCTTTGCGTCACTTGCGGACTGTTGGGCGGCCCAGCGTCCGTCGGCACGTGATTGCGGTATGACCCACACCGGACTAAGGAGGAAATTGAGTTGCTGCTGTCCAAACAAGAACCTAAACGTTCTTCCTCATTTCCTCATTTGCGGAGAGCGCAAACTGTTCTACACGCTTCTTTCACACATCGACAGGTCGATGTAGCTTTTAGAAAGATTAATTTATGACACTTTTAGGCAACGATTAGTTACTGCTTCTAGGAATGATAGTTAGTGATGATCATACATTACGTTTATATTTGTAATAATTTTCCTCAAATCATGTTTCCTCCATCACAACATTGAACTGGAACCTTAGGGTGGCCCTTTCTGTTAGAATGTTTAGGATATTTCTCATTTAATATTTATTAAACGCGAGCGCAAGCCATAAAACCCAGTCGACAGCTGGAACTTACTCTCGAATTCCTTCACATACGTAAAGAATCAAGTGATGGCTCGAAATAAGTGCAAGAATTGTGCTGTATTGCTTCATAAGATTACAAAGAAATGTAAAATCGCACACAAAACACTCGACACCCCTATCCCTCTATCGTGTAACCGTGTTCGTCATGATGCCCAGGCGAGCACCCCTGTCTGACACCGCGCTGCCATTCGTAGTGT]




>consensus_227#0
GCCGCCGCTAAACGTCATCAACCTTTGCGTCACTTGCGGACTGTTGGGCGGCCCAGCGTC
CGTCGGCACGTGATTGCGGTATGACCCACACCGGACTAAGGAGGAAATTGAGTTGCTGCT
GTCCAAACAAGAACCTAAACGTTCTTCCTCATTTCCTCATTTGCGGAGAGCGCAAACTGT
TCTACACGCTTCTTTCACACATCGACAGGTCGATGTAGCTTTTAGAAAGATTAATTTATG
ACACTTTTAGGCAACGATTAGTTACTGCTTCTAGGAATGATAGTTAGTGATGATCATACA
TTACGTTTATATTTGTAATAATTTTCCTCAAATCATGTTTCCTCCATCACAACATTGAAC
TGGAACCTTAGGGTGGCCCTTTCTGTTAGAATGTTTAGGATATTTCTCATTTAATATTTA
TTAAACGCGAGCGCAAGCCATAAAACCCAGTCGACAGCTGGAACTTACTCTCGAATTCCT
TCACATACGTAAAGAATCAAGTGATGGCTCGAAATAAGTGCAAGAATTGTGCTGTATTGC
TTCATAAGATTACAAAGAAATGTAAAATCGCACACAAAACACTCGACACCCCTATCCCTC
TATCGTGTAACCGTGTTCGTCATGATGCCCAGGCGAGCACCCCTGTCTGACACCGCGCTG
CCATTCGTAGTGT

consensusID : consensus_227#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [CCGCCGGCAGGTGGCTCACACTGTCTTTCTCACGGCTGGAAGCGAAAGCAATGTGGCTAGAGACGTGTGCCGCAGGTGTTTGAATCGAAATCGTAGCAATCCGTGACAGCTGTGACCGGTAGAACTGTAGTCACTCGTCTCGGGCTGTACTATGTATAACTGTACTACACTACTTACACTAACCGTAGGATGGGCGTAGACGCCTTTCCGAATCGTACCAAAGAGCACTAAACTAACTAGCTTTAGTATAGCAACTAGCGAAACGATCTTCAAGCTTTCGATGGCAAACCGTAGCAGCAGCAGCAGCAATTAGAAAATCAAAACAAAAAGAAGACAGAGCAAAGAAAGTATATTATATTCGAAAGTGTTATACGAACGTTATACTTACCTGTGAAATTGTCCTATCGTTAAATCTGTCTGTTAGTCCTAACATGTGTGTGTGTAGCGGCTACCCACCAGCGGAATCGTACGTGGTAACGGAAAAACTCATCAGCCCCAAACCCCAGTTCAGATTACACTGGGCATTTGTTTTATTTTGTTCCGCCAGCGTATGTTCCGACGCGTGTCACTAAACAAGCAAACAATTACACTGCACTTAGCTAGCTAGAGCCGCCGCTAAACGTCATCAACCGTTGCGTCA]

[+] EMBL BM627249             [CCGCCGGCAGGTGGCTCACACTGTCTTTCTCACGGCTGGAAGCGAAAGCAATGTGGCTAGAGACGTGTGCCGCAGGTGTTTGAATCGAAATCGTAGCAATCCGTGACAGCTGTGACCGGTAGAACTGTAGTCACTCGTCTCGGGCTGTACTATGTATAACTGTACTACACTACTTACACTAACCGTAGGATGGGCGTAGACGCCTTTCCGAATCGTACCAAAGAGCACTAAACTAACTAGCTTTAGTATAGCAACTAGCGAAACGATCTTCAAGCTTTCGATGGCAAACCGTAGCAGCAGCAGCAGCAATTAGAAAATCAAAACAAAAAGAAGACAGAGCAAAGAAAGTATATTATATTCGAAAGTGTTATACGAACGTTATACTTACCTGTGAAATTGTCCTATCGTTAAATCTGTCTGTTAGTCCTAACATGTGTGTGTGTAGCGGCTACCCACCAGCGGAATCGTACGTGGTAACGGAAAAACTCATCAGCCCCAAACCCCAGTTCAGATTACACTGGGCATTTGTTTTATTTTGTTCCGCCAGCGTATGTTCCGACGCGTGTCACTAAACAAGCAAACAATTACACTGCACTTAGCTAGCTAGAGCCGCCGCTAAACGTCATCAACCGTTGCGTCA]




>consensus_227#1
CCGCCGGCAGGTGGCTCACACTGTCTTTCTCACGGCTGGAAGCGAAAGCAATGTGGCTAG
AGACGTGTGCCGCAGGTGTTTGAATCGAAATCGTAGCAATCCGTGACAGCTGTGACCGGT
AGAACTGTAGTCACTCGTCTCGGGCTGTACTATGTATAACTGTACTACACTACTTACACT
AACCGTAGGATGGGCGTAGACGCCTTTCCGAATCGTACCAAAGAGCACTAAACTAACTAG
CTTTAGTATAGCAACTAGCGAAACGATCTTCAAGCTTTCGATGGCAAACCGTAGCAGCAG
CAGCAGCAATTAGAAAATCAAAACAAAAAGAAGACAGAGCAAAGAAAGTATATTATATTC
GAAAGTGTTATACGAACGTTATACTTACCTGTGAAATTGTCCTATCGTTAAATCTGTCTG
TTAGTCCTAACATGTGTGTGTGTAGCGGCTACCCACCAGCGGAATCGTACGTGGTAACGG
AAAAACTCATCAGCCCCAAACCCCAGTTCAGATTACACTGGGCATTTGTTTTATTTTGTT
CCGCCAGCGTATGTTCCGACGCGTGTCACTAAACAAGCAAACAATTACACTGCACTTAGC
TAGCTAGAGCCGCCGCTAAACGTCATCAACCGTTGCGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_227#0      GCCGCCGCTAAACGTCATCAACCTTTGCGTCACTTGCGGACTGTTGGGCGGCCCAGCGTC 60
consensus_227#1      -CCGCCGGCAGGTGGC-TCA--CACTGTCTTTCTCACGG-CTGGAAGCGAAAGCAATGTG 55
                      ******  *   * * ***  *  **  *  **  *** ***   *      **  ** 

consensus_227#0      CGTCGGCACGTGATTGCGGTATG-ACCCACACCGGACTAAGGAGGAAATTGAGTTGCTGC 119
consensus_227#1      GCTAGAGACGTG--TGCCGCAGGTGTTTGAATCGAAAT--CGTAGCAATCC-GTGACAGC 110
                       * *  *****  *** * * *       * ** * *   *  * ***   **  * **

consensus_227#0      TGTCCAAACAAGAACCTAAACGTTCTTCCTCATTTCCTCATTTGCGGAGAGCGCAAACTG 179
consensus_227#1      TGTGACCGGTAGAACT-----GTAGTCACTCGTCTCGGGCTGTACTATGTAT---AACTG 162
                     ***       *****      **  *  *** * **    * * *   *      *****

consensus_227#0      TTCTACACGCTTCTTTCACACATCGACAGGTCGATGTAG---CTTTTAGAAAGATTAATT 236
consensus_227#1      TACTACAC--TACTTACACTAACCGTAGGATGGGCGTAGACGCCTTTCCGAATCGTACCA 220
                     * ******  * *** ***  * **   * * *  ****   * ***   **   **   

consensus_227#0      TATGACACTT--TTAGGCAACGATTAGTTACTGCTTCTAGGAATGATAGTTAG--TGATG 292
consensus_227#1      AAGAGCACTAAACTAACTAGCTTTAGTATAGCAACTAGCGAAACGATCTTCAAGCTTTCG 280
                      *   ****    **   * *  *    **     *   * ** ***  * *   *   *

consensus_227#0      ATCATACATTACGTTTATATTTGTAATAATTTTCCTCAAATCATGTTTCCTCCATCACAA 352
consensus_227#1      ATGGCAAACCGTAGCAGCAGCAGCAGCAATTAGA---AAATCAAAACAAAAAGAAGACAG 337
                     **   * *          *   * *  ****      ******          *  *** 

consensus_227#0      CATTGAACTGGAACCTTAGGGTGGCCCTTTCTGTTAGAATGTTTAGGATATTTCTCATTT 412
consensus_227#1      AGCAAAGAAAGTATATTATATTCGAAAGTGTTATACGAACGTTATACTTACCTGTGAAAT 397
                          *    * *  ***   * *    *  * *  *** ***     **  * * *  *

consensus_227#0      AATATT--TATTAAACGCGAGCGCAAGCCATAAAACCCA-GTCGACAGCTGGAACTTACT 469
consensus_227#1      TGTCCTATCGTTAAATCTGTCTGTTAGTCCTAACATGTGTGTGTGTAGCGGCTACCCACC 457
                       *  *    *****   *   *  ** * *** *     **    *** *  **  ** 

consensus_227#0      CTCGAATTCCTTCACATACGTAAAGAATCAAGTGAT-GGCTCGAAATAAGTGCAAGAATT 528
consensus_227#1      AGCGGAATCGTACGTG---GTAACGGAAAAACTCATCAGCCCCAAACCCCAGTTCAGATT 514
                       ** * ** * *      **** * *  ** * **  ** * ***     *     ***

consensus_227#0      GTGCTGTA---TTGCTTCATAAGATTACAAAGAAATGTAAAATCGCACACAAAACACTCG 585
consensus_227#1      ACACTGGGCATTTGTTTTATTTTGTTCCGCC--AGCGTATGTTCCGACGCGTGTCACTAA 572
                        ***     *** ** **    ** *     *  ***   **  ** *    ****  

consensus_227#0      ACACCCCTATCCCTCTATCGTGTAACCGTGTTCGTCATGATGCCCAGGCGAGCACCCCTG 645
consensus_227#1      ACAAGCAAACAATTACACTGC---ACTTAGCTAGCTA-GAGCCGCCGCTAAACGTCATCA 628
                     ***  *  *    *  *  *    **   * * *  * **  * * *   * *  *    

consensus_227#0      TCTGACACCGCGCTGCCATTCGTAGTGT 673
consensus_227#1      ACCGTTGCGTCA---------------- 640
                      * *   *  *