cluster # 2289

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Anopheles gambiae
cluster # 2289 cluster # 2289 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2289#0 length = 596 sequences # 1

consensus_2289#1 length = 472 sequences # 1

consensusID : consensus_2289#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 596
fasta sequence

                              [CCGGAGAAAACTGTTGAAATGATGAACTCAACGTGGACCAAATGGCAAAACTGACGAAGAAGAAAGCAAGACAAGAGATCTTTACGAGCCATTCCGCTCAAAAAAGCGATGGCTCCGAGTCGGAAACTTTCCACCAACTACGCATATGAGCAAAGGTACGTGACGGAACAGGTGTGTGTGTACACATTGTAAAATTGTTGTTTGCGGGCATTAAGCCAAAAAGGGACAAAGTATCACATCACATAGACAAATGTGTATGAGTGCGGATTTGTGTAAAAAGCGGGTGAGAGAACCTGTGTACCTACTCAAAAGATTACTTAAAATTGCATATATAACAAAAAAAAAAAGAAAATGAAAAGAAAACACACTAAATTATCCCATCGAATTTTGAATCTTAGGTTTTGAGCCATTTTAACACGATCGTGCTGTGTATGTTATATAGCCTGTAAAATGTAAGAGTACACGCTTGCAGGGGTGGTGGGTGGTCTACGTGTTGCGAGTGTAACCAAAACACAACAAGAGAATTGAAGGAAACAGTTTTCAGAGTGACAGTTTCTAATCTGATACTGTTTCTAATCTGTTTGTTGTACAGTGGT]

[+] EMBL BM656843             [CCGGAGAAAACTGTTGAAATGATGAACTCAACGTGGACCAAATGGCAAAACTGACGAAGAAGAAAGCAAGACAAGAGATCTTTACGAGCCATTCCGCTCAAAAAAGCGATGGCTCCGAGTCGGAAACTTTCCACCAACTACGCATATGAGCAAAGGTACGTGACGGAACAGGTGTGTGTGTACACATTGTAAAATTGTTGTTTGCGGGCATTAAGCCAAAAAGGGACAAAGTATCACATCACATAGACAAATGTGTATGAGTGCGGATTTGTGTAAAAAGCGGGTGAGAGAACCTGTGTACCTACTCAAAAGATTACTTAAAATTGCATATATAACAAAAAAAAAAAGAAAATGAAAAGAAAACACACTAAATTATCCCATCGAATTTTGAATCTTAGGTTTTGAGCCATTTTAACACGATCGTGCTGTGTATGTTATATAGCCTGTAAAATGTAAGAGTACACGCTTGCAGGGGTGGTGGGTGGTCTACGTGTTGCGAGTGTAACCAAAACACAACAAGAGAATTGAAGGAAACAGTTTTCAGAGTGACAGTTTCTAATCTGATACTGTTTCTAATCTGTTTGTTGTACAGTGGT]




>consensus_2289#0
CCGGAGAAAACTGTTGAAATGATGAACTCAACGTGGACCAAATGGCAAAACTGACGAAGA
AGAAAGCAAGACAAGAGATCTTTACGAGCCATTCCGCTCAAAAAAGCGATGGCTCCGAGT
CGGAAACTTTCCACCAACTACGCATATGAGCAAAGGTACGTGACGGAACAGGTGTGTGTG
TACACATTGTAAAATTGTTGTTTGCGGGCATTAAGCCAAAAAGGGACAAAGTATCACATC
ACATAGACAAATGTGTATGAGTGCGGATTTGTGTAAAAAGCGGGTGAGAGAACCTGTGTA
CCTACTCAAAAGATTACTTAAAATTGCATATATAACAAAAAAAAAAAGAAAATGAAAAGA
AAACACACTAAATTATCCCATCGAATTTTGAATCTTAGGTTTTGAGCCATTTTAACACGA
TCGTGCTGTGTATGTTATATAGCCTGTAAAATGTAAGAGTACACGCTTGCAGGGGTGGTG
GGTGGTCTACGTGTTGCGAGTGTAACCAAAACACAACAAGAGAATTGAAGGAAACAGTTT
TCAGAGTGACAGTTTCTAATCTGATACTGTTTCTAATCTGTTTGTTGTACAGTGGT

consensusID : consensus_2289#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [AGCTCAGGCAGAATCGCCCCGAGGTTATTCGGTAGTTTTATAGATTTTCGGGCTGGCAATAGACTAAAACTGTTGAAATGATGAACTCAACGTGGACCAAATGGCAAAACTGACAAAGAAGAAAGAAAGAAAAGAGATCTTTACGAGCCATTCCGCTCAAAAAAGCGATGGCTTCGTGTCGGAAAGTTTCCACCAACTACGCATATGAGCAAAGGTTCGTGACAGAACAGGTGTGTGTATGTGTGTGTGCACACTTGTAAATTGGCGTTTGCGGGCATTAAGGCCNACGACAAGGAGTCAACAGTATCGCATCATTAGGACCAAACAGTCGTAATTGACNTCGCNGACTNCTGGNTGTTCAAACAGGCGGNTTGAGATGAAACCCTGTGTAAGCCTAACTCCAAAANGGATTTACTTTCACAGCAACCTGGGCTAATATTAACCAAACAGCGACAATCATACATAAGAAAAC]

[+] EMBL AL697053             [AGCTCAGGCAGAATCGCCCCGAGGTTATTCGGTAGTTTTATAGATTTTCGGGCTGGCAATAGACTAAAACTGTTGAAATGATGAACTCAACGTGGACCAAATGGCAAAACTGACAAAGAAGAAAGAAAGAAAAGAGATCTTTACGAGCCATTCCGCTCAAAAAAGCGATGGCTTCGTGTCGGAAAGTTTCCACCAACTACGCATATGAGCAAAGGTTCGTGACAGAACAGGTGTGTGTATGTGTGTGTGCACACTTGTAAATTGGCGTTTGCGGGCATTAAGGCCNACGACAAGGAGTCAACAGTATCGCATCATTAGGACCAAACAGTCGTAATTGACNTCGCNGACTNCTGGNTGTTCAAACAGGCGGNTTGAGATGAAACCCTGTGTAAGCCTAACTCCAAAANGGATTTACTTTCACAGCAACCTGGGCTAATATTAACCAAACAGCGACAATCATACATAAGAAAAC]




>consensus_2289#1
AGCTCAGGCAGAATCGCCCCGAGGTTATTCGGTAGTTTTATAGATTTTCGGGCTGGCAAT
AGACTAAAACTGTTGAAATGATGAACTCAACGTGGACCAAATGGCAAAACTGACAAAGAA
GAAAGAAAGAAAAGAGATCTTTACGAGCCATTCCGCTCAAAAAAGCGATGGCTTCGTGTC
GGAAAGTTTCCACCAACTACGCATATGAGCAAAGGTTCGTGACAGAACAGGTGTGTGTAT
GTGTGTGTGCACACTTGTAAATTGGCGTTTGCGGGCATTAAGGCCNACGACAAGGAGTCA
ACAGTATCGCATCATTAGGACCAAACAGTCGTAATTGACNTCGCNGACTNCTGGNTGTTC
AAACAGGCGGNTTGAGATGAAACCCTGTGTAAGCCTAACTCCAAAANGGATTTACTTTCA
CAGCAACCTGGGCTAATATTAACCAAACAGCGACAATCATACATAAGAAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2289#0      -----------------------------------------------------------C 1
consensus_2289#1      AGCTCAGGCAGAATCGCCCCGAGGTTATTCGGTAGTTTTATAGATTTTCGGGCTGGCAAT 60
                                                                                  

consensus_2289#0      CGGAGAAAACTGTTGAAATGATGAACTCAACGTGGACCAAATGGCAAAACTGACGAAGAA 61
consensus_2289#1      AGACTAAAACTGTTGAAATGATGAACTCAACGTGGACCAAATGGCAAAACTGACAAAGAA 120
                       *   ************************************************* *****

consensus_2289#0      GAAAGCAAGACAAGAGATCTTTACGAGCCATTCCGCTCAAAAAAGCGATGGCTCCGAGTC 121
consensus_2289#1      GAAAGAAAGAAAAGAGATCTTTACGAGCCATTCCGCTCAAAAAAGCGATGGCTTCGTGTC 180
                      ***** **** ****************************************** ** ***

consensus_2289#0      GGAAACTTTCCACCAACTACGCATATGAGCAAAGGTACGTGACGGAACAGGTGTGTGT-- 179
consensus_2289#1      GGAAAGTTTCCACCAACTACGCATATGAGCAAAGGTTCGTGACAGAACAGGTGTGTGTAT 240
                      ***** ****************************** ****** **************  

consensus_2289#0      ------GTACACATTGTAAAATTGTTGTTTGCGGGCATTAAG-CCAA----AAAGGGACA 228
consensus_2289#1      GTGTGTGTGCACACTTGTAAATTGGCGTTTGCGGGCATTAAGGCCNACGACAAGGAGTCA 300
                            ** **** *   ******  **************** ** *    ** * * **

consensus_2289#0      A-AGTATCACATCACATAGACAAATGTGTATGAGTGCGGATTTGTGTAAAAAGCGGGTGA 287
consensus_2289#1      ACAGTATCGCATCATTAGGACCAAACAGTCGTAAT--TGACNTCGCNGACTNCTGGNTGT 358
                      * ****** *****    *** **   **   * *   **  *     *     ** ** 

consensus_2289#0      GAGAACCTGTGTACCTACTCAAAAGATTACTTAAAATTGCATATATAACAAAAAAAAAAA 347
consensus_2289#1      TCAAACAGGCGGNTTGAGATGAAACCCTGTGTAAGCCTAACT------CCAAAANGGATT 412
                         ***  * *     *    ***   *   ***   *   *      * ****   *  

consensus_2289#0      GAAAATGAAAAGAAAACACACTAA-ATTATCCCATCGAATTTTGAATCTTAGGTTTTGAG 406
consensus_2289#1      TACTTTCACAGCAACCTGGGCTAATATTAACCAAAC--AGCGACAATCATACATAAGAAA 470
                       *   * * *  **      **** **** ** * *  *     **** **  *    * 

consensus_2289#0      CCATTTTAACACGATCGTGCTGTGTATGTTATATAGCCTGTAAAATGTAAGAGTACACGC 466
consensus_2289#1      AC---------------------------------------------------------- 472
                       *                                                          

consensus_2289#0      TTGCAGGGGTGGTGGGTGGTCTACGTGTTGCGAGTGTAACCAAAACACAACAAGAGAATT 526
consensus_2289#1      ------------------------------------------------------------
                                                                                  

consensus_2289#0      GAAGGAAACAGTTTTCAGAGTGACAGTTTCTAATCTGATACTGTTTCTAATCTGTTTGTT 586
consensus_2289#1      ------------------------------------------------------------
                                                                                  

consensus_2289#0      GTACAGTGGT 596
consensus_2289#1      ----------