cluster # 2309

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Anopheles gambiae
cluster # 2309 cluster # 2309 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2309#0 length = 938 sequences # 1

consensus_2309#1 length = 255 sequences # 1

consensusID : consensus_2309#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 938
fasta sequence

                              [TCGGCCCGAGGGNGTATCTCTGACTGTGCTGGTCGTCTTCCTTTACCAAGACCTGGTGGAACAACTCTCTTATATCAGCGGCCACTGCCACTCGATATTCTCGGAATCTTTGAAGGACTGATGAAAGGGAGGACAGTAGATCTGGACCTGTTAGCAGCATCGAATTCAGAGAGACCCCCATGAAATTGGGGGGGGTCCCCAAAACCAACTCACTTTCCGGCTTGTTAGGGATTTTACCCACCAGGGAACAAGGATAGGGAAAGATACCACCATTTTGGGACCCGAATCGCCTTGTTCTCTTTTTAGGTGACAGCTTTTCGTTGCCATTAAACCCTTTTTTTCTTAAAATTATTCTTGGTGGATTTNTTTCTCCAAGTTCTAACAGCGTCGTTTCCGGTAAGTTTTGGGAACCTTTTCAACCGGCGTCCAATTGCCGTCCGATTCTTAGAGACCAGGTCCCAAGTCCTTTTTTTTAAAAGGCCATTGCCCTTCTTAATTTATTTAGGGCATTCCTTTTCAACCCATTAATTTCCGGGAAGAAAACCGGGCCCGATTAAACCGAAAGCCCCCCCCGGGATNATCCGTGAATTTCCGGTGCGCCAAATTCCTTTAAACGACCTTGGGCGCTTCTTATCGGTAATTGCGCGGTTGGCCCAGGTTAAACGATTAAGGGACCTTTTCCTTAAACGCCCCCTTAAAGAGCGTGTTTGCCCCAAGAGGTTACCCCCCGGGAAACCGAGAAGTTCCGGGCCAAACCGGGGCNAANTTCNGCAACAAGGTTCCCCTCAATTTGGGCCAATTCCCGGGAAATTAACCAAGAACCTCTTTGGGTATCGGAGTATTATTCCGGCGCGAANGGCACAACTATGCGGTTCTCTCGGATTTTTGGGCGCCCNGGGAAGAGTAGCCGAAAAGACCCGGGGTAACTGAACTTTTAA]

[+] EMBL AL697169             [TCGGCCCGAGGGNGTATCTCTGACTGTGCTGGTCGTCTTCCTTTACCAAGACCTGGTGGAACAACTCTCTTATATCAGCGGCCACTGCCACTCGATATTCTCGGAATCTTTGAAGGACTGATGAAAGGGAGGACAGTAGATCTGGACCTGTTAGCAGCATCGAATTCAGAGAGACCCCCATGAAATTGGGGGGGGTCCCCAAAACCAACTCACTTTCCGGCTTGTTAGGGATTTTACCCACCAGGGAACAAGGATAGGGAAAGATACCACCATTTTGGGACCCGAATCGCCTTGTTCTCTTTTTAGGTGACAGCTTTTCGTTGCCATTAAACCCTTTTTTTCTTAAAATTATTCTTGGTGGATTTNTTTCTCCAAGTTCTAACAGCGTCGTTTCCGGTAAGTTTTGGGAACCTTTTCAACCGGCGTCCAATTGCCGTCCGATTCTTAGAGACCAGGTCCCAAGTCCTTTTTTTTAAAAGGCCATTGCCCTTCTTAATTTATTTAGGGCATTCCTTTTCAACCCATTAATTTCCGGGAAGAAAACCGGGCCCGATTAAACCGAAAGCCCCCCCCGGGATNATCCGTGAATTTCCGGTGCGCCAAATTCCTTTAAACGACCTTGGGCGCTTCTTATCGGTAATTGCGCGGTTGGCCCAGGTTAAACGATTAAGGGACCTTTTCCTTAAACGCCCCCTTAAAGAGCGTGTTTGCCCCAAGAGGTTACCCCCCGGGAAACCGAGAAGTTCCGGGCCAAACCGGGGCNAANTTCNGCAACAAGGTTCCCCTCAATTTGGGCCAATTCCCGGGAAATTAACCAAGAACCTCTTTGGGTATCGGAGTATTATTCCGGCGCGAANGGCACAACTATGCGGTTCTCTCGGATTTTTGGGCGCCCNGGGAAGAGTAGCCGAAAAGACCCGGGGTAACTGAACTTTTAA]




>consensus_2309#0
TCGGCCCGAGGGNGTATCTCTGACTGTGCTGGTCGTCTTCCTTTACCAAGACCTGGTGGA
ACAACTCTCTTATATCAGCGGCCACTGCCACTCGATATTCTCGGAATCTTTGAAGGACTG
ATGAAAGGGAGGACAGTAGATCTGGACCTGTTAGCAGCATCGAATTCAGAGAGACCCCCA
TGAAATTGGGGGGGGTCCCCAAAACCAACTCACTTTCCGGCTTGTTAGGGATTTTACCCA
CCAGGGAACAAGGATAGGGAAAGATACCACCATTTTGGGACCCGAATCGCCTTGTTCTCT
TTTTAGGTGACAGCTTTTCGTTGCCATTAAACCCTTTTTTTCTTAAAATTATTCTTGGTG
GATTTNTTTCTCCAAGTTCTAACAGCGTCGTTTCCGGTAAGTTTTGGGAACCTTTTCAAC
CGGCGTCCAATTGCCGTCCGATTCTTAGAGACCAGGTCCCAAGTCCTTTTTTTTAAAAGG
CCATTGCCCTTCTTAATTTATTTAGGGCATTCCTTTTCAACCCATTAATTTCCGGGAAGA
AAACCGGGCCCGATTAAACCGAAAGCCCCCCCCGGGATNATCCGTGAATTTCCGGTGCGC
CAAATTCCTTTAAACGACCTTGGGCGCTTCTTATCGGTAATTGCGCGGTTGGCCCAGGTT
AAACGATTAAGGGACCTTTTCCTTAAACGCCCCCTTAAAGAGCGTGTTTGCCCCAAGAGG
TTACCCCCCGGGAAACCGAGAAGTTCCGGGCCAAACCGGGGCNAANTTCNGCAACAAGGT
TCCCCTCAATTTGGGCCAATTCCCGGGAAATTAACCAAGAACCTCTTTGGGTATCGGAGT
ATTATTCCGGCGCGAANGGCACAACTATGCGGTTCTCTCGGATTTTTGGGCGCCCNGGGA
AGAGTAGCCGAAAAGACCCGGGGTAACTGAACTTTTAA

consensusID : consensus_2309#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [CCGATACATTCGACTGCACGAGGATGCGATGTGGCATATTTGTCGGTGTTGAGGTTTTTCACAAACTGCCCACTGCTGGGAGAGCAGCCCACCCAAACATCATTCTTTGCATGACATATTCATCAAGTTCAGTTTGCTCTCTATTCCAACGCCATAGGAATCTCTGACTGTGCTGGTCGTCTTCCTTTACCAAGACCTGGTGGAACAACTCTCTTATATCAGCGGCCACTGCCACTCGATATTCTCGGAATCTTT]

[+] EMBL BM580281             [CCGATACATTCGACTGCACGAGGATGCGATGTGGCATATTTGTCGGTGTTGAGGTTTTTCACAAACTGCCCACTGCTGGGAGAGCAGCCCACCCAAACATCATTCTTTGCATGACATATTCATCAAGTTCAGTTTGCTCTCTATTCCAACGCCATAGGAATCTCTGACTGTGCTGGTCGTCTTCCTTTACCAAGACCTGGTGGAACAACTCTCTTATATCAGCGGCCACTGCCACTCGATATTCTCGGAATCTTT]




>consensus_2309#1
CCGATACATTCGACTGCACGAGGATGCGATGTGGCATATTTGTCGGTGTTGAGGTTTTTC
ACAAACTGCCCACTGCTGGGAGAGCAGCCCACCCAAACATCATTCTTTGCATGACATATT
CATCAAGTTCAGTTTGCTCTCTATTCCAACGCCATAGGAATCTCTGACTGTGCTGGTCGT
CTTCCTTTACCAAGACCTGGTGGAACAACTCTCTTATATCAGCGGCCACTGCCACTCGAT
ATTCTCGGAATCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2309#0      TCGGCCCGAGGGNGTATCTCTGACTGTGCTGGTCGTCTTCCTTTACCAAGACCTGGTGGA 60
consensus_2309#1      ------------------------------------------------------------
                                                                                  

consensus_2309#0      ACAACTCTCTTATATCAGCGGCCACTGCCACTCGATATTCTCGGAATCTTTGAAGGACTG 120
consensus_2309#1      ------------------------------------------------------------
                                                                                  

consensus_2309#0      ATGAAAGGGAGGACAGTAGATCTGGACCTGTTAGCAGCATCGAATTCAGAGAGACCCCCA 180
consensus_2309#1      ------------------------------------------------------------
                                                                                  

consensus_2309#0      TGAAATTGGGGGGGGTCCCCAAAACCAACTCACTTTCCGGCTTGTTAGGGATTTTACCCA 240
consensus_2309#1      ------------------------------------------------------------
                                                                                  

consensus_2309#0      CCAGGGAACAAGGATAGGGAAAGATACCACCATTTTGGGACCCGAATCGCCTTGTTCTCT 300
consensus_2309#1      CCGATACATTCGACTGCACGAGGATGCGA----TGTGGCATATTTGTCGGTGTTGAGGTT 56
                      **     *   *  *     * *** * *    * *** *      ***   *      *

consensus_2309#0      TTTTAGGTGACAGCTTTTCGTTGCCATTAAACCCTTTTTTTCTTAAAATTATTCTTGGTG 360
consensus_2309#1      TTTCACA----AACTGCCCACTGCTGGGAGAGCAGCCCACCCA-AACATCATTCTTTGCA 111
                      *** *      * **   *  ***    * * *        *  ** ** ****** *  

consensus_2309#0      GATTTNTTTCTCCAAGTTCTAACAGCGTCGTTTCCGGTAAGTTTTGGGAACCTTTTCAAC 420
consensus_2309#1      TGACATATTCATCAAGTTCAGTTTGCTCTCTATTCCA-ACGCCATAGGAATCTCT--GAC 168
                             ***  *******     **    * * *   * *   * **** ** *   **

consensus_2309#0      CGGCGTCCAATTGCCGTCCGATTCTTAGAGACCAGGTCCCA-AGTCCTTTTTTTTAAAAG 479
consensus_2309#1      TGTG--CTGGTCGTCTTCC--TTTACCAAGACCTGGTGGAACAACTCTCTTATATCAGCG 224
                       *    *   * * * ***  **     ***** ***   * *   ** ** * * *  *

consensus_2309#0      GCCATTGCCCTTCTTAATTTATTTAGGGCATTCCTTTTCAACCCATTAATTTCCGGGAAG 539
consensus_2309#1      GCCACTGCC--ACTCGATATTCTCGGAATCTTT--------------------------- 255
                      **** ****   **  ** *  *  *    **                            

consensus_2309#0      AAAACCGGGCCCGATTAAACCGAAAGCCCCCCCCGGGATNATCCGTGAATTTCCGGTGCG 599
consensus_2309#1      ------------------------------------------------------------
                                                                                  

consensus_2309#0      CCAAATTCCTTTAAACGACCTTGGGCGCTTCTTATCGGTAATTGCGCGGTTGGCCCAGGT 659
consensus_2309#1      ------------------------------------------------------------
                                                                                  

consensus_2309#0      TAAACGATTAAGGGACCTTTTCCTTAAACGCCCCCTTAAAGAGCGTGTTTGCCCCAAGAG 719
consensus_2309#1      ------------------------------------------------------------
                                                                                  

consensus_2309#0      GTTACCCCCCGGGAAACCGAGAAGTTCCGGGCCAAACCGGGGCNAANTTCNGCAACAAGG 779
consensus_2309#1      ------------------------------------------------------------
                                                                                  

consensus_2309#0      TTCCCCTCAATTTGGGCCAATTCCCGGGAAATTAACCAAGAACCTCTTTGGGTATCGGAG 839
consensus_2309#1      ------------------------------------------------------------
                                                                                  

consensus_2309#0      TATTATTCCGGCGCGAANGGCACAACTATGCGGTTCTCTCGGATTTTTGGGCGCCCNGGG 899
consensus_2309#1      ------------------------------------------------------------
                                                                                  

consensus_2309#0      AAGAGTAGCCGAAAAGACCCGGGGTAACTGAACTTTTAA 938
consensus_2309#1      ---------------------------------------