cluster # 2319

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Anopheles gambiae
cluster # 2319 cluster # 2319 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2319#0 length = 630 sequences # 1

consensus_2319#1 length = 618 sequences # 1

consensusID : consensus_2319#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence

                              [CCGGTTTGTGAGACAGAGCGTCTTTTGTCAAGCAACTTTTGTTATTGTGAAAAAAATGGAAAAAAAGGAATTTCGTGTTTTGATAAAATACTGTTTTCTGAAGGGAAAAAATACAGTGGAAGCAAAAACTTGGCTTGATAATGAGTTTCCGGACTCTGCCCCAGGGAAATCAACAATAATTGATTGGTATGCAAAATTCAAGCGTGGTGAAATGAGCACGGAGGACGGTGAACGCAGTGGACGCCCGAAAGAGGTAGTTACCGACGAAAACATCAAAAAAATCCACAAAATGATTTTGAATGACCGTAAAATGAAGTTGATCGAGATAGCAGAGGCCTTAAAGATATCAAAAGAACGTGTTGGTCATATCATTCATCAATATTTGGATATGCGGAAGCTCTGTGCAAAATGGGTCTCGCGCGAGCTCACATTTGACCAAAAACACCAACGTGTTGATGATTCGGAGCGGTGTTTGCAGCTGTTAACTCGTAATACACCCGAGTTTTTGCGTCGATATGTGACAATGGGTGAAACATGGCTCCATCACTACACTCCTGAGTCCAATCGACAGTCGGCTCAGTGGACAGCGACCGGTGAACCGGCTCCGAAGCGTGGAAAGACTCAAAAGTC]

[+] EMBL BM651632             [CCGGTTTGTGAGACAGAGCGTCTTTTGTCAAGCAACTTTTGTTATTGTGAAAAAAATGGAAAAAAAGGAATTTCGTGTTTTGATAAAATACTGTTTTCTGAAGGGAAAAAATACAGTGGAAGCAAAAACTTGGCTTGATAATGAGTTTCCGGACTCTGCCCCAGGGAAATCAACAATAATTGATTGGTATGCAAAATTCAAGCGTGGTGAAATGAGCACGGAGGACGGTGAACGCAGTGGACGCCCGAAAGAGGTAGTTACCGACGAAAACATCAAAAAAATCCACAAAATGATTTTGAATGACCGTAAAATGAAGTTGATCGAGATAGCAGAGGCCTTAAAGATATCAAAAGAACGTGTTGGTCATATCATTCATCAATATTTGGATATGCGGAAGCTCTGTGCAAAATGGGTCTCGCGCGAGCTCACATTTGACCAAAAACACCAACGTGTTGATGATTCGGAGCGGTGTTTGCAGCTGTTAACTCGTAATACACCCGAGTTTTTGCGTCGATATGTGACAATGGGTGAAACATGGCTCCATCACTACACTCCTGAGTCCAATCGACAGTCGGCTCAGTGGACAGCGACCGGTGAACCGGCTCCGAAGCGTGGAAAGACTCAAAAGTC]




>consensus_2319#0
CCGGTTTGTGAGACAGAGCGTCTTTTGTCAAGCAACTTTTGTTATTGTGAAAAAAATGGA
AAAAAAGGAATTTCGTGTTTTGATAAAATACTGTTTTCTGAAGGGAAAAAATACAGTGGA
AGCAAAAACTTGGCTTGATAATGAGTTTCCGGACTCTGCCCCAGGGAAATCAACAATAAT
TGATTGGTATGCAAAATTCAAGCGTGGTGAAATGAGCACGGAGGACGGTGAACGCAGTGG
ACGCCCGAAAGAGGTAGTTACCGACGAAAACATCAAAAAAATCCACAAAATGATTTTGAA
TGACCGTAAAATGAAGTTGATCGAGATAGCAGAGGCCTTAAAGATATCAAAAGAACGTGT
TGGTCATATCATTCATCAATATTTGGATATGCGGAAGCTCTGTGCAAAATGGGTCTCGCG
CGAGCTCACATTTGACCAAAAACACCAACGTGTTGATGATTCGGAGCGGTGTTTGCAGCT
GTTAACTCGTAATACACCCGAGTTTTTGCGTCGATATGTGACAATGGGTGAAACATGGCT
CCATCACTACACTCCTGAGTCCAATCGACAGTCGGCTCAGTGGACAGCGACCGGTGAACC
GGCTCCGAAGCGTGGAAAGACTCAAAAGTC

consensusID : consensus_2319#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGAGCGTCTTTTGTCAAGCAACTTTTGTTATTGTGAAAAAAATGGAAAAAAAGGAATTTCGTGTTTTGATAAAATACTGTTTTCTGAAGGGAAAAAATACAGTGGAAGCAAAAACTTGGCTTGATAATGAGTTTCCGGACTCTGCCCCAGGGAAATCAACAATAATTGATTGGTATGCAAAATTCAAGCGTGGTGAAATGAGCACGGAGGACGGTGAACGCAGTGGACGCCCGAAAGAGGTAGTTACCGACGAAAACATCAAAAAAATCCACAAAATGATTTTGAATGACCGTAAAATGAAGTTGATCGAGATAGCAGAGGCCTTAAAGATATCAAAAGAACGTGTTGGTCATATCATTCATCAATATTTGGATATGCGGAAGCTCTGTGCAAAATGGGTCTCGCGCGAGCTCACATTTGACCAAAAACACCAACGTGTTGATGATTCGGAGCGGTGATTTGCAGCTGTTAACTCGTAATACACCCGAGTTTTTGCGTCGATATGTGACAATGGGTGAAACATGGCTCCATCACTACACTCCTGAGTCCAATCGACAGTCGGCTCAGTGGACAGCGACCGGTGAACCGGCTCC]

[+] EMBL BM598113             [CCGCGGACGCGTGGGCGGACGCGTGGGAGCGTCTTTTGTCAAGCAACTTTTGTTATTGTGAAAAAAATGGAAAAAAAGGAATTTCGTGTTTTGATAAAATACTGTTTTCTGAAGGGAAAAAATACAGTGGAAGCAAAAACTTGGCTTGATAATGAGTTTCCGGACTCTGCCCCAGGGAAATCAACAATAATTGATTGGTATGCAAAATTCAAGCGTGGTGAAATGAGCACGGAGGACGGTGAACGCAGTGGACGCCCGAAAGAGGTAGTTACCGACGAAAACATCAAAAAAATCCACAAAATGATTTTGAATGACCGTAAAATGAAGTTGATCGAGATAGCAGAGGCCTTAAAGATATCAAAAGAACGTGTTGGTCATATCATTCATCAATATTTGGATATGCGGAAGCTCTGTGCAAAATGGGTCTCGCGCGAGCTCACATTTGACCAAAAACACCAACGTGTTGATGATTCGGAGCGGTGATTTGCAGCTGTTAACTCGTAATACACCCGAGTTTTTGCGTCGATATGTGACAATGGGTGAAACATGGCTCCATCACTACACTCCTGAGTCCAATCGACAGTCGGCTCAGTGGACAGCGACCGGTGAACCGGCTCC]




>consensus_2319#1
CCGCGGACGCGTGGGCGGACGCGTGGGAGCGTCTTTTGTCAAGCAACTTTTGTTATTGTG
AAAAAAATGGAAAAAAAGGAATTTCGTGTTTTGATAAAATACTGTTTTCTGAAGGGAAAA
AATACAGTGGAAGCAAAAACTTGGCTTGATAATGAGTTTCCGGACTCTGCCCCAGGGAAA
TCAACAATAATTGATTGGTATGCAAAATTCAAGCGTGGTGAAATGAGCACGGAGGACGGT
GAACGCAGTGGACGCCCGAAAGAGGTAGTTACCGACGAAAACATCAAAAAAATCCACAAA
ATGATTTTGAATGACCGTAAAATGAAGTTGATCGAGATAGCAGAGGCCTTAAAGATATCA
AAAGAACGTGTTGGTCATATCATTCATCAATATTTGGATATGCGGAAGCTCTGTGCAAAA
TGGGTCTCGCGCGAGCTCACATTTGACCAAAAACACCAACGTGTTGATGATTCGGAGCGG
TGATTTGCAGCTGTTAACTCGTAATACACCCGAGTTTTTGCGTCGATATGTGACAATGGG
TGAAACATGGCTCCATCACTACACTCCTGAGTCCAATCGACAGTCGGCTCAGTGGACAGC
GACCGGTGAACCGGCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2319#0      -----------CCGGTTTGTGAGACAGAGCGTCTTTTGTCAAGCAACTTTTGTTATTGTG 49
consensus_2319#1      CCGCGGACGCGTGGGCGGACGCGTGGGAGCGTCTTTTGTCAAGCAACTTTTGTTATTGTG 60
                                   **     * *   **********************************

consensus_2319#0      AAAAAAATGGAAAAAAAGGAATTTCGTGTTTTGATAAAATACTGTTTTCTGAAGGGAAAA 109
consensus_2319#1      AAAAAAATGGAAAAAAAGGAATTTCGTGTTTTGATAAAATACTGTTTTCTGAAGGGAAAA 120
                      ************************************************************

consensus_2319#0      AATACAGTGGAAGCAAAAACTTGGCTTGATAATGAGTTTCCGGACTCTGCCCCAGGGAAA 169
consensus_2319#1      AATACAGTGGAAGCAAAAACTTGGCTTGATAATGAGTTTCCGGACTCTGCCCCAGGGAAA 180
                      ************************************************************

consensus_2319#0      TCAACAATAATTGATTGGTATGCAAAATTCAAGCGTGGTGAAATGAGCACGGAGGACGGT 229
consensus_2319#1      TCAACAATAATTGATTGGTATGCAAAATTCAAGCGTGGTGAAATGAGCACGGAGGACGGT 240
                      ************************************************************

consensus_2319#0      GAACGCAGTGGACGCCCGAAAGAGGTAGTTACCGACGAAAACATCAAAAAAATCCACAAA 289
consensus_2319#1      GAACGCAGTGGACGCCCGAAAGAGGTAGTTACCGACGAAAACATCAAAAAAATCCACAAA 300
                      ************************************************************

consensus_2319#0      ATGATTTTGAATGACCGTAAAATGAAGTTGATCGAGATAGCAGAGGCCTTAAAGATATCA 349
consensus_2319#1      ATGATTTTGAATGACCGTAAAATGAAGTTGATCGAGATAGCAGAGGCCTTAAAGATATCA 360
                      ************************************************************

consensus_2319#0      AAAGAACGTGTTGGTCATATCATTCATCAATATTTGGATATGCGGAAGCTCTGTGCAAAA 409
consensus_2319#1      AAAGAACGTGTTGGTCATATCATTCATCAATATTTGGATATGCGGAAGCTCTGTGCAAAA 420
                      ************************************************************

consensus_2319#0      TGGGTCTCGCGCGAGCTCACATTTGACCAAAAACACCAACGTGTTGATGATTCGGAGCGG 469
consensus_2319#1      TGGGTCTCGCGCGAGCTCACATTTGACCAAAAACACCAACGTGTTGATGATTCGGAGCGG 480
                      ************************************************************

consensus_2319#0      TG-TTTGCAGCTGTTAACTCGTAATACACCCGAGTTTTTGCGTCGATATGTGACAATGGG 528
consensus_2319#1      TGATTTGCAGCTGTTAACTCGTAATACACCCGAGTTTTTGCGTCGATATGTGACAATGGG 540
                      ** *********************************************************

consensus_2319#0      TGAAACATGGCTCCATCACTACACTCCTGAGTCCAATCGACAGTCGGCTCAGTGGACAGC 588
consensus_2319#1      TGAAACATGGCTCCATCACTACACTCCTGAGTCCAATCGACAGTCGGCTCAGTGGACAGC 600
                      ************************************************************

consensus_2319#0      GACCGGTGAACCGGCTCCGAAGCGTGGAAAGACTCAAAAGTC 630
consensus_2319#1      GACCGGTGAACCGGCTCC------------------------ 618
                      ******************