cluster # 2331

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Anopheles gambiae
cluster # 2331 cluster # 2331 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2331#0 length = 550 sequences # 1

consensus_2331#1 length = 128 sequences # 1

consensusID : consensus_2331#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [CCGCACGATGTGCAGCTACGCATCGATTCGCATCTGAACGGTTCCGGCGGTGCCAGCGAAGGCTCCCCGGAACGGGACCAGGAAGCAAGACAAGCAGCCGCCGCGGCAGCCGCTGCCTACGCCAAACGACCTGTCAGTATGTACGAAACGCGCCAGACGCCACGTGACGAAAGCCGACCACCGATCACGCAGAGCCTTTACTCGATGGCTCCGGCTGGTGGCAGCAGCGCCAGCATGGACCCGGGCAATGGCACGAATGTGAACGGTGGCACCGGTGCCGGTCAGCTTCCCTCCTTCGAGGAGGTGAAACGCCGCACCGATGTTGTAGCGCGCCGCATCAAGGACCTGTTCGCAGCGATGAAAGATCTTTCCCAGCGGGAAGCGTTCGTCCCGTCGGCGGAACGGATACGGCTGGCGGTCGTTGATTTGATGGCCCTGTTTCCCGCCTCGATCATTGCGAGCGAATCGCTCCGCGGTGCCCTGCAGCAGCTCAACTTTCACGGTAACCTGATCCAGGCGGAGTGTGCCCGGCTGCAGCAATGCTTGGCAG]

[+] EMBL BM631615             [CCGCACGATGTGCAGCTACGCATCGATTCGCATCTGAACGGTTCCGGCGGTGCCAGCGAAGGCTCCCCGGAACGGGACCAGGAAGCAAGACAAGCAGCCGCCGCGGCAGCCGCTGCCTACGCCAAACGACCTGTCAGTATGTACGAAACGCGCCAGACGCCACGTGACGAAAGCCGACCACCGATCACGCAGAGCCTTTACTCGATGGCTCCGGCTGGTGGCAGCAGCGCCAGCATGGACCCGGGCAATGGCACGAATGTGAACGGTGGCACCGGTGCCGGTCAGCTTCCCTCCTTCGAGGAGGTGAAACGCCGCACCGATGTTGTAGCGCGCCGCATCAAGGACCTGTTCGCAGCGATGAAAGATCTTTCCCAGCGGGAAGCGTTCGTCCCGTCGGCGGAACGGATACGGCTGGCGGTCGTTGATTTGATGGCCCTGTTTCCCGCCTCGATCATTGCGAGCGAATCGCTCCGCGGTGCCCTGCAGCAGCTCAACTTTCACGGTAACCTGATCCAGGCGGAGTGTGCCCGGCTGCAGCAATGCTTGGCAG]




>consensus_2331#0
CCGCACGATGTGCAGCTACGCATCGATTCGCATCTGAACGGTTCCGGCGGTGCCAGCGAA
GGCTCCCCGGAACGGGACCAGGAAGCAAGACAAGCAGCCGCCGCGGCAGCCGCTGCCTAC
GCCAAACGACCTGTCAGTATGTACGAAACGCGCCAGACGCCACGTGACGAAAGCCGACCA
CCGATCACGCAGAGCCTTTACTCGATGGCTCCGGCTGGTGGCAGCAGCGCCAGCATGGAC
CCGGGCAATGGCACGAATGTGAACGGTGGCACCGGTGCCGGTCAGCTTCCCTCCTTCGAG
GAGGTGAAACGCCGCACCGATGTTGTAGCGCGCCGCATCAAGGACCTGTTCGCAGCGATG
AAAGATCTTTCCCAGCGGGAAGCGTTCGTCCCGTCGGCGGAACGGATACGGCTGGCGGTC
GTTGATTTGATGGCCCTGTTTCCCGCCTCGATCATTGCGAGCGAATCGCTCCGCGGTGCC
CTGCAGCAGCTCAACTTTCACGGTAACCTGATCCAGGCGGAGTGTGCCCGGCTGCAGCAA
TGCTTGGCAG

consensusID : consensus_2331#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 128
fasta sequence

                              [GCCCCGAGGTTTNACGGTGGCACGGTGCCGGTCAGCTTCCTCCTTCGAGGAGGTGAAACGCCGACCGATGTAGTAGCTGCTGCCGCATCAAGGACCTGTTCGCAGCGATGAAAGATCTTTCCCAGCGG]

[+] EMBL AL697384             [GCCCCGAGGTTTNACGGTGGCACGGTGCCGGTCAGCTTCCTCCTTCGAGGAGGTGAAACGCCGACCGATGTAGTAGCTGCTGCCGCATCAAGGACCTGTTCGCAGCGATGAAAGATCTTTCCCAGCGG]




>consensus_2331#1
GCCCCGAGGTTTNACGGTGGCACGGTGCCGGTCAGCTTCCTCCTTCGAGGAGGTGAAACG
CCGACCGATGTAGTAGCTGCTGCCGCATCAAGGACCTGTTCGCAGCGATGAAAGATCTTT
CCCAGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2331#0      CCGCACGATGTGCAGCTACGCATCGATTCGCATCTGAACGGTTCCGGCGGTGCCAGCGAA 60
consensus_2331#1      ------------------------------------------------------------
                                                                                  

consensus_2331#0      GGCTCCCCGGAACGGGACCAGGAAGCAAGACAAGCAGCCGCCGCGGCAGCCGCTGCCTAC 120
consensus_2331#1      ------------------------------------------------------------
                                                                                  

consensus_2331#0      GCCAAACGACCTGTCAGTATGTACGAAACGCGCCAGACGCCACGTGACGAAAGCCGACCA 180
consensus_2331#1      ------------------------------------------------------------
                                                                                  

consensus_2331#0      CCGATCACGCAGAGCCTTTACTCGATGGCTCCGGCTGGTGGCAGCAGCGCCAGCATGGAC 240
consensus_2331#1      ------------------------------------------------------------
                                                                                  

consensus_2331#0      CCGGGCAATGGCACGAATGTGAACGGTGGCACCGGTGCCGGTCAGCTTCCCTCCTTCGAG 300
consensus_2331#1      ---------GCCCCGAGGTTTNACGGTGGCAC-GGTGCCGGTCAGCTTCC-TCCTTCGAG 49
                               * * ***   *  ********** ***************** *********

consensus_2331#0      GAGGTGAAACGCCGCACCGATGTTGTAGCG--CGCCGCATCAAGGACCTGTTCGCAGCGA 358
consensus_2331#1      GAGGTGAAACGCCG-ACCGATGTAGTAGCTGCTGCCGCATCAAGGACCTGTTCGCAGCGA 108
                      ************** ******** *****    ***************************

consensus_2331#0      TGAAAGATCTTTCCCAGCGGGAAGCGTTCGTCCCGTCGGCGGAACGGATACGGCTGGCGG 418
consensus_2331#1      TGAAAGATCTTTCCCAGCGG---------------------------------------- 128
                      ********************                                        

consensus_2331#0      TCGTTGATTTGATGGCCCTGTTTCCCGCCTCGATCATTGCGAGCGAATCGCTCCGCGGTG 478
consensus_2331#1      ------------------------------------------------------------
                                                                                  

consensus_2331#0      CCCTGCAGCAGCTCAACTTTCACGGTAACCTGATCCAGGCGGAGTGTGCCCGGCTGCAGC 538
consensus_2331#1      ------------------------------------------------------------
                                                                                  

consensus_2331#0      AATGCTTGGCAG 550
consensus_2331#1      ------------