cluster # 2333

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Anopheles gambiae
cluster # 2333 cluster # 2333 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2333#0 length = 465 sequences # 1

consensus_2333#1 length = 401 sequences # 1

consensusID : consensus_2333#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [TAGCGTATTCAAGTAGTAATATGTAAAACAATTCAATCTCGGCCTCCTCGGACCTTTTACTCAGAACGTACCCTAGAAATAGAGCGCACTCCATGTTGCGACGATAAATCCCTTTTCCTCTTAGACAACGCTTAAAAAAAGACCATGGTAGCTTGAAATATTAAACCTCAATGAAAGCCTTTCTGCACTAACACTAACTCAGCAAAGCAATGGAACTTTTACAAATCATGTTATAGTTTTGTAAAGTCGTTAGGCCATGAAAAAGACGTTTGAATAATGATAGTCAAATTGCAGCGATATTAACAGCAAGTTTTGACGTATGATGCGTAATAAATTGCGCTGCGTGTACATAAGGACGAGACGGTAAGGAGAGCAGCAGCAGCACACGCTTGCAAGAGATCAAACTTGGTTGGTTTAAGATGCATTTTTTGTTTGTTTCTGCTTGATTTATGTACGCNATTGTGC]

[+] EMBL BX624347             [TAGCGTATTCAAGTAGTAATATGTAAAACAATTCAATCTCGGCCTCCTCGGACCTTTTACTCAGAACGTACCCTAGAAATAGAGCGCACTCCATGTTGCGACGATAAATCCCTTTTCCTCTTAGACAACGCTTAAAAAAAGACCATGGTAGCTTGAAATATTAAACCTCAATGAAAGCCTTTCTGCACTAACACTAACTCAGCAAAGCAATGGAACTTTTACAAATCATGTTATAGTTTTGTAAAGTCGTTAGGCCATGAAAAAGACGTTTGAATAATGATAGTCAAATTGCAGCGATATTAACAGCAAGTTTTGACGTATGATGCGTAATAAATTGCGCTGCGTGTACATAAGGACGAGACGGTAAGGAGAGCAGCAGCAGCACACGCTTGCAAGAGATCAAACTTGGTTGGTTTAAGATGCATTTTTTGTTTGTTTCTGCTTGATTTATGTACGCNATTGTGC]




>consensus_2333#0
TAGCGTATTCAAGTAGTAATATGTAAAACAATTCAATCTCGGCCTCCTCGGACCTTTTAC
TCAGAACGTACCCTAGAAATAGAGCGCACTCCATGTTGCGACGATAAATCCCTTTTCCTC
TTAGACAACGCTTAAAAAAAGACCATGGTAGCTTGAAATATTAAACCTCAATGAAAGCCT
TTCTGCACTAACACTAACTCAGCAAAGCAATGGAACTTTTACAAATCATGTTATAGTTTT
GTAAAGTCGTTAGGCCATGAAAAAGACGTTTGAATAATGATAGTCAAATTGCAGCGATAT
TAACAGCAAGTTTTGACGTATGATGCGTAATAAATTGCGCTGCGTGTACATAAGGACGAG
ACGGTAAGGAGAGCAGCAGCAGCACACGCTTGCAAGAGATCAAACTTGGTTGGTTTAAGA
TGCATTTTTTGTTTGTTTCTGCTTGATTTATGTACGCNATTGTGC

consensusID : consensus_2333#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGAATAATGATAGTCAAATTGCAGCGATATTAACAGCAAGTTTTGACGTACGATGCGTAATAAATTGCGCTGCGTGTACATAAGGACGAGACGGTAAGGAGAGCAGCAGCAGCACACGCTTGCAAGAGATCAAACTTGGTTGGTTTAAGATGCGTTTTTTGTTTGTTTCTGCTTGATTTATGTACGCAATTGTGCCTGGATTTCAAGAAAGGTTCTTATCCGTTTGTACAAATAACAATTGCCGACGGCTTACGGTGCGCGTAGAACGACGCGCAGGGCCCGTCAGGTGGTCACTGTAAGGAAATGTAGCTTTGCTCGGACAGGTTGTAGTTCATAATAAGAGTTCAGGGAGAATAAAAAATATCAATTTC]

[+] EMBL BM597912             [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGAATAATGATAGTCAAATTGCAGCGATATTAACAGCAAGTTTTGACGTACGATGCGTAATAAATTGCGCTGCGTGTACATAAGGACGAGACGGTAAGGAGAGCAGCAGCAGCACACGCTTGCAAGAGATCAAACTTGGTTGGTTTAAGATGCGTTTTTTGTTTGTTTCTGCTTGATTTATGTACGCAATTGTGCCTGGATTTCAAGAAAGGTTCTTATCCGTTTGTACAAATAACAATTGCCGACGGCTTACGGTGCGCGTAGAACGACGCGCAGGGCCCGTCAGGTGGTCACTGTAAGGAAATGTAGCTTTGCTCGGACAGGTTGTAGTTCATAATAAGAGTTCAGGGAGAATAAAAAATATCAATTTC]




>consensus_2333#1
CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGAATAATGATAGTCAAATTGCAGCGATAT
TAACAGCAAGTTTTGACGTACGATGCGTAATAAATTGCGCTGCGTGTACATAAGGACGAG
ACGGTAAGGAGAGCAGCAGCAGCACACGCTTGCAAGAGATCAAACTTGGTTGGTTTAAGA
TGCGTTTTTTGTTTGTTTCTGCTTGATTTATGTACGCAATTGTGCCTGGATTTCAAGAAA
GGTTCTTATCCGTTTGTACAAATAACAATTGCCGACGGCTTACGGTGCGCGTAGAACGAC
GCGCAGGGCCCGTCAGGTGGTCACTGTAAGGAAATGTAGCTTTGCTCGGACAGGTTGTAG
TTCATAATAAGAGTTCAGGGAGAATAAAAAATATCAATTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2333#0      TAGCGTATTCAAGTAGTAATATGTAAAACAATTCAATCTCGGCCTCCTCGGACCTTTTAC 60
consensus_2333#1      ------------------------------------------------------------
                                                                                  

consensus_2333#0      TCAGAACGTACCCTAGAAATAGAGCGCACTCCATGTTGCGACGATAAATCCCTTTTCCTC 120
consensus_2333#1      ------------------------------------------------------------
                                                                                  

consensus_2333#0      TTAGACAACGCTTAAAAAAAGACCATGGTAGCTTGAAATATTAAACCTCAATGAAAGCCT 180
consensus_2333#1      ------------------------------------------------------------
                                                                                  

consensus_2333#0      TTCTGCACTAACACTAACTCAGCAAAGCAATGGAACTTTTACAAATCATGTTATAGTTTT 240
consensus_2333#1      ----------------------------------------------------------CC 2
                                                                                  

consensus_2333#0      GTAAAGTCGTTAGGCCATGAAAAAGACGTTTGAATAATGATAGTCAAATTGCAGCGATAT 300
consensus_2333#1      GCCCACGCGTCCGCCCACGCGTCCG--GTTTGAATAATGATAGTCAAATTGCAGCGATAT 60
                      *   *  ***  * *** *     *  *********************************

consensus_2333#0      TAACAGCAAGTTTTGACGTATGATGCGTAATAAATTGCGCTGCGTGTACATAAGGACGAG 360
consensus_2333#1      TAACAGCAAGTTTTGACGTACGATGCGTAATAAATTGCGCTGCGTGTACATAAGGACGAG 120
                      ******************** ***************************************

consensus_2333#0      ACGGTAAGGAGAGCAGCAGCAGCACACGCTTGCAAGAGATCAAACTTGGTTGGTTTAAGA 420
consensus_2333#1      ACGGTAAGGAGAGCAGCAGCAGCACACGCTTGCAAGAGATCAAACTTGGTTGGTTTAAGA 180
                      ************************************************************

consensus_2333#0      TGCATTTTTTGTTTGTTTCTGCTTGATTTATGTACGCNATTGTGC--------------- 465
consensus_2333#1      TGCGTTTTTTGTTTGTTTCTGCTTGATTTATGTACGCAATTGTGCCTGGATTTCAAGAAA 240
                      *** ********************************* *******               

consensus_2333#0      ------------------------------------------------------------
consensus_2333#1      GGTTCTTATCCGTTTGTACAAATAACAATTGCCGACGGCTTACGGTGCGCGTAGAACGAC 300
                                                                                  

consensus_2333#0      ------------------------------------------------------------
consensus_2333#1      GCGCAGGGCCCGTCAGGTGGTCACTGTAAGGAAATGTAGCTTTGCTCGGACAGGTTGTAG 360
                                                                                  

consensus_2333#0      -----------------------------------------
consensus_2333#1      TTCATAATAAGAGTTCAGGGAGAATAAAAAATATCAATTTC 401