cluster # 2335

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Anopheles gambiae
cluster # 2335 cluster # 2335 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2335#0 length = 688 sequences # 1

consensus_2335#1 length = 565 sequences # 1

consensusID : consensus_2335#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGGTTTCCAAATTTTGATGTAGTGCGTGAGAGAATCAAATTTGAAAAGTGTTTGTGAAAACAAGAAAAAAAAGAGGAAAAGAAACAGTGCAAACCTCCATTACCGCCACAATCTGCAATGGCTAAAAATCGCGAAATCATTCAGCTGCACGTTGGCCAGGCGGGCGTACAGATGGCCAGTGCCTGCTGGGAGCTGTACTGTCTCGAGCACGGCATCTATCCGGACGGGCTGTTTTGCGACTGTTCGATCAACGAGGACTGCAGTGCGTTCTTTAGCTGTGACCGGTCGGGGCAGTGTGTGCCGCGCGTGCTGCTAGTCGATCTGGAACCGTCCGTGGTGGACGAGATACGGATCGGCACGTACCGGGATCTGTTTCATCCGAGCTCGCTGCTAACCGGGTGTGAAGATGCGGCCAGTAACTTCGGCCGGGGCCACTATCGGCTCGGCCAGACGATGATCGAACCGGCGATGGATCGGTTGCGCAAGCTGTGCGAACACTGCTCCTCGCTGCAGGGCTTTATGATGTTTCACAGCGATGGGCGGCGGTACGGGGGCCGGCCTGGGGACGCTGCTGCTCGAACGGCTCGGTGAGGACTTTTGGCAAGGCGTCGCGGCATGGAAGTTTGACATCTTTCCGTCGCGAAAGATATCGCCGGTCATC]

[+] EMBL BM597750             [CCGCGGACGCGTGGGCGGACGCGTGGGCGGTTTCCAAATTTTGATGTAGTGCGTGAGAGAATCAAATTTGAAAAGTGTTTGTGAAAACAAGAAAAAAAAGAGGAAAAGAAACAGTGCAAACCTCCATTACCGCCACAATCTGCAATGGCTAAAAATCGCGAAATCATTCAGCTGCACGTTGGCCAGGCGGGCGTACAGATGGCCAGTGCCTGCTGGGAGCTGTACTGTCTCGAGCACGGCATCTATCCGGACGGGCTGTTTTGCGACTGTTCGATCAACGAGGACTGCAGTGCGTTCTTTAGCTGTGACCGGTCGGGGCAGTGTGTGCCGCGCGTGCTGCTAGTCGATCTGGAACCGTCCGTGGTGGACGAGATACGGATCGGCACGTACCGGGATCTGTTTCATCCGAGCTCGCTGCTAACCGGGTGTGAAGATGCGGCCAGTAACTTCGGCCGGGGCCACTATCGGCTCGGCCAGACGATGATCGAACCGGCGATGGATCGGTTGCGCAAGCTGTGCGAACACTGCTCCTCGCTGCAGGGCTTTATGATGTTTCACAGCGATGGGCGGCGGTACGGGGGCCGGCCTGGGGACGCTGCTGCTCGAACGGCTCGGTGAGGACTTTTGGCAAGGCGTCGCGGCATGGAAGTTTGACATCTTTCCGTCGCGAAAGATATCGCCGGTCATC]




>consensus_2335#0
CCGCGGACGCGTGGGCGGACGCGTGGGCGGTTTCCAAATTTTGATGTAGTGCGTGAGAGA
ATCAAATTTGAAAAGTGTTTGTGAAAACAAGAAAAAAAAGAGGAAAAGAAACAGTGCAAA
CCTCCATTACCGCCACAATCTGCAATGGCTAAAAATCGCGAAATCATTCAGCTGCACGTT
GGCCAGGCGGGCGTACAGATGGCCAGTGCCTGCTGGGAGCTGTACTGTCTCGAGCACGGC
ATCTATCCGGACGGGCTGTTTTGCGACTGTTCGATCAACGAGGACTGCAGTGCGTTCTTT
AGCTGTGACCGGTCGGGGCAGTGTGTGCCGCGCGTGCTGCTAGTCGATCTGGAACCGTCC
GTGGTGGACGAGATACGGATCGGCACGTACCGGGATCTGTTTCATCCGAGCTCGCTGCTA
ACCGGGTGTGAAGATGCGGCCAGTAACTTCGGCCGGGGCCACTATCGGCTCGGCCAGACG
ATGATCGAACCGGCGATGGATCGGTTGCGCAAGCTGTGCGAACACTGCTCCTCGCTGCAG
GGCTTTATGATGTTTCACAGCGATGGGCGGCGGTACGGGGGCCGGCCTGGGGACGCTGCT
GCTCGAACGGCTCGGTGAGGACTTTTGGCAAGGCGTCGCGGCATGGAAGTTTGACATCTT
TCCGTCGCGAAAGATATCGCCGGTCATC

consensusID : consensus_2335#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [CCGCTTTTTGGCGTTGCGGGAAACCGGTTTCCAAATTTTGATGTAGTGCGTGAGAGAATCAAATTTGAAAAGTGTTTGTGAAAACAAGAAAAAAAAGAGGAAAAGAAACAGTGCAAACCTCCATTACCGCCACAATCTGCAATGGCTAAAAATCGCGAAATCATTCAGCTGCACGTTGGCCAGGCGGGCGTACAGATGGCCAGTGCCTGCTGGGAGCTGTACTGTCTCGAGCACGGCATCTATCCGGACGGGCTGTTTTGCGACTGTTCGATCAACGAGGACTGCAGTGCGTTCTTTAGCTGTGACCGGTCGGGGCAGTGTGTGCCGCGCGTGCTGCTAGTCGATCTGGAACCGTCCGTGGTGGACGAGATACGGATCGGCACGTACCGGGATCTGTTTCATCCGAGCTCGCTGCTAACCGGGTGTGAAGATGCGGCCAGTAACTTCGGCCGGGGCCACTATCGGCTCGGCCAGACGATGATCGAACCGGCGATGGATCGGTTGCGCAAGCTGTGCGAACACTGCTCCTCGCTGCAGGGCTTTATGATGTTTCACAGCGTGGGCG]

[+] EMBL BM641018             [CCGCTTTTTGGCGTTGCGGGAAACCGGTTTCCAAATTTTGATGTAGTGCGTGAGAGAATCAAATTTGAAAAGTGTTTGTGAAAACAAGAAAAAAAAGAGGAAAAGAAACAGTGCAAACCTCCATTACCGCCACAATCTGCAATGGCTAAAAATCGCGAAATCATTCAGCTGCACGTTGGCCAGGCGGGCGTACAGATGGCCAGTGCCTGCTGGGAGCTGTACTGTCTCGAGCACGGCATCTATCCGGACGGGCTGTTTTGCGACTGTTCGATCAACGAGGACTGCAGTGCGTTCTTTAGCTGTGACCGGTCGGGGCAGTGTGTGCCGCGCGTGCTGCTAGTCGATCTGGAACCGTCCGTGGTGGACGAGATACGGATCGGCACGTACCGGGATCTGTTTCATCCGAGCTCGCTGCTAACCGGGTGTGAAGATGCGGCCAGTAACTTCGGCCGGGGCCACTATCGGCTCGGCCAGACGATGATCGAACCGGCGATGGATCGGTTGCGCAAGCTGTGCGAACACTGCTCCTCGCTGCAGGGCTTTATGATGTTTCACAGCGTGGGCG]




>consensus_2335#1
CCGCTTTTTGGCGTTGCGGGAAACCGGTTTCCAAATTTTGATGTAGTGCGTGAGAGAATC
AAATTTGAAAAGTGTTTGTGAAAACAAGAAAAAAAAGAGGAAAAGAAACAGTGCAAACCT
CCATTACCGCCACAATCTGCAATGGCTAAAAATCGCGAAATCATTCAGCTGCACGTTGGC
CAGGCGGGCGTACAGATGGCCAGTGCCTGCTGGGAGCTGTACTGTCTCGAGCACGGCATC
TATCCGGACGGGCTGTTTTGCGACTGTTCGATCAACGAGGACTGCAGTGCGTTCTTTAGC
TGTGACCGGTCGGGGCAGTGTGTGCCGCGCGTGCTGCTAGTCGATCTGGAACCGTCCGTG
GTGGACGAGATACGGATCGGCACGTACCGGGATCTGTTTCATCCGAGCTCGCTGCTAACC
GGGTGTGAAGATGCGGCCAGTAACTTCGGCCGGGGCCACTATCGGCTCGGCCAGACGATG
ATCGAACCGGCGATGGATCGGTTGCGCAAGCTGTGCGAACACTGCTCCTCGCTGCAGGGC
TTTATGATGTTTCACAGCGTGGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2335#0      CCGCGGACGCGTGGGCGGACGCGTGGGCGGTTTCCAAATTTTGATGTAGTGCGTGAGAGA 60
consensus_2335#1      ---CCGCTTTTTGGCGTTGCGGGAAACCGGTTTCCAAATTTTGATGTAGTGCGTGAGAGA 57
                         * *     ***     ** *    *********************************

consensus_2335#0      ATCAAATTTGAAAAGTGTTTGTGAAAACAAGAAAAAAAAGAGGAAAAGAAACAGTGCAAA 120
consensus_2335#1      ATCAAATTTGAAAAGTGTTTGTGAAAACAAGAAAAAAAAGAGGAAAAGAAACAGTGCAAA 117
                      ************************************************************

consensus_2335#0      CCTCCATTACCGCCACAATCTGCAATGGCTAAAAATCGCGAAATCATTCAGCTGCACGTT 180
consensus_2335#1      CCTCCATTACCGCCACAATCTGCAATGGCTAAAAATCGCGAAATCATTCAGCTGCACGTT 177
                      ************************************************************

consensus_2335#0      GGCCAGGCGGGCGTACAGATGGCCAGTGCCTGCTGGGAGCTGTACTGTCTCGAGCACGGC 240
consensus_2335#1      GGCCAGGCGGGCGTACAGATGGCCAGTGCCTGCTGGGAGCTGTACTGTCTCGAGCACGGC 237
                      ************************************************************

consensus_2335#0      ATCTATCCGGACGGGCTGTTTTGCGACTGTTCGATCAACGAGGACTGCAGTGCGTTCTTT 300
consensus_2335#1      ATCTATCCGGACGGGCTGTTTTGCGACTGTTCGATCAACGAGGACTGCAGTGCGTTCTTT 297
                      ************************************************************

consensus_2335#0      AGCTGTGACCGGTCGGGGCAGTGTGTGCCGCGCGTGCTGCTAGTCGATCTGGAACCGTCC 360
consensus_2335#1      AGCTGTGACCGGTCGGGGCAGTGTGTGCCGCGCGTGCTGCTAGTCGATCTGGAACCGTCC 357
                      ************************************************************

consensus_2335#0      GTGGTGGACGAGATACGGATCGGCACGTACCGGGATCTGTTTCATCCGAGCTCGCTGCTA 420
consensus_2335#1      GTGGTGGACGAGATACGGATCGGCACGTACCGGGATCTGTTTCATCCGAGCTCGCTGCTA 417
                      ************************************************************

consensus_2335#0      ACCGGGTGTGAAGATGCGGCCAGTAACTTCGGCCGGGGCCACTATCGGCTCGGCCAGACG 480
consensus_2335#1      ACCGGGTGTGAAGATGCGGCCAGTAACTTCGGCCGGGGCCACTATCGGCTCGGCCAGACG 477
                      ************************************************************

consensus_2335#0      ATGATCGAACCGGCGATGGATCGGTTGCGCAAGCTGTGCGAACACTGCTCCTCGCTGCAG 540
consensus_2335#1      ATGATCGAACCGGCGATGGATCGGTTGCGCAAGCTGTGCGAACACTGCTCCTCGCTGCAG 537
                      ************************************************************

consensus_2335#0      GGCTTTATGATGTTTCACAGCGATGGGCGGCGGTACGGGGGCCGGCCTGGGGACGCTGCT 600
consensus_2335#1      GGCTTTATGATGTTTCACAGCG-TGGGCG------------------------------- 565
                      ********************** ******                               

consensus_2335#0      GCTCGAACGGCTCGGTGAGGACTTTTGGCAAGGCGTCGCGGCATGGAAGTTTGACATCTT 660
consensus_2335#1      ------------------------------------------------------------
                                                                                  

consensus_2335#0      TCCGTCGCGAAAGATATCGCCGGTCATC 688
consensus_2335#1      ----------------------------